Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------YAB1 ----HAHB4                             <---------ANAC55(2)      --------->ATHB12 --->ATHB1                             <---------TOE2(3)        <---------AHL20(2)          <-------- ---->YAB1                       --------->AHL20(1)      ============================================ ---->ATHB51                     --------->AHL20(2)      ----------------->AGL3             --------- -----ICU4                       <---------AHL20(1)  ------>ZmHOX2a(2)                --------->AHL20(2) ----ATHB51                      <---------AHL20(2)<---------ARR11(3)           <----------ID1 --->ICU4                        --------->ARR11(3)--------->ARR11(3)           ----------->GT1   --- ----ATHB12                      <---------ARR11(3)<-----------ARR10     ----------->GT1    <-------- ->WOX13(1)                --------->YAB1    <---------AHL20(2)<---------YAB1 ---------->DOF2 ------>ZmHOX2a(2)   attacttagaagcattttgagttatacaatagaaatatattaagtatatatatgatcttcccatatttattgagtaagtaaaaagaaaaaaaatgatctt  7419600                                                                                                  <--                                                                                              <------                                                                                            -------->HAHB4                                                                                            ---------                                                                                           --------->ICU4                                                                                           ----------                               <---------AHL20(2)                                        -------->HAHB4                   <-----------GT1                                                       <---------ICU4                   <---------AHL20(2)                                                    --------->YAB1               <---------AHL20(2)                                                       --------->ICU4               --------->AHL20(2)  --------->AHL20(2)                                   <---------ATHB51              <---------AHL20(2)  <---------WOX13(1)                                 <---------AHL20(2)     --------->AHL20(2)        <---------YAB1                                        --------->AHL20(2)     <---------AHL20(2)  <---------AHL20(2)                        ----------->RAV1(1)--------->YAB1 ---ARR10  --------->AHL20(2) <---------AHL20(2)                <-----------GT1  --------->AHL20(2) ===============MADS_MADS--------->AHL20(2)          <-----------GT1             <---------AHL20(2) >ARR11(3) <---------AHL20(2) --------->AHL20(2) <---------TOE2(3) ------->GAMYB --------->ICU4   --- -------------->AGL3    --------->AHL20(2)       <---------TOE1(3)--------->MYB46(3)--------->AHL20(2) -ARR11(3)--------->AHL20(2) --------->YAB1 <----------DOF2  --------->YAB1 ----------->GT1<---------YAB1   cccatatttatataaaattatttacatttaattttaattgaatatgcttttaatgttacaaaattataaccacagaaatagaaaaaattaataatgataa  7419700                                                                          ----------->GT1                                --------->AHL20(1)              --------->REM1(2)             <------                                <---------AHL20(2)             --------->ALFIN1             <--------                                --------->AHL20(2)        --------->ARR11(3)                --------- <---------TOE2(3)              <---------AHL20(1)        --------->GLK1(2)      <---------ARR11(3) -------AHL20(2)               <---------AHL20(2)  ----------->GT1      ---------->DOF2    --------->ICU4 ---YAB1            <---------ARR11(3)  <------ZmHOX2a(1) <---------ARR11(3)    --------->RVE1(1) >YAB1      ---------->DOF2--------->ICU4    ---------->DOF2   <---------ANAC46 --------->CCA1(1) <-- ->GT1 ----------->GT1----------->GT1 <---------TOE2(3)  --------->RVE1(1)<----------ID1   --------->AHL20(2) ------>AHL20(2)---------->DOF2--------->AHL20(2) ----------->GT1 --------->ZAT18--------->ARR11(3)   ataaatgttgagaaaaaagaaagatagtaagaattaaatttaggaaaaaaagaagttaaaaatctgtgtggacaaaaagaaaaaatctccatatttatta  7419800                                              ----------->TBP                                          --------------->AGL15                                          <---------------AGL15                                          ------>ZmHOX2a(1)                                      ------>ZmHOX2a(1)                                      ===========================HOX2a_HOX2a                                   ==============================HOX2a_HOX2a                               ==============HOX2a_HOX2a                               ------>ZmHOX2a(2)                              --------->GLK1(1)           ------>ZmHOX2a(2)                              <---------GLK1(1)         --------->ARR11(3)                         --------->ANAC55(2)  --------->AHL20(2)     ----------->GT1     <---------ANAC46 =======================HOX2a_HOX2a     =================================HOX2a_HOX2a       <---------ARR11(3)     <------ZmHOX2a(1)   <---------ANAC58=======================================MADS_MADS    ----------->GT1      <---------ANAC55(1)  <---------AHL20(2)   <---------TOE2(3)     <---------ANAC58----------------->AGL3               --------->WOX13(1) ---------->DOF2         <---------ANAC55(2)----------->TBP        <-----------TBP---------->DOF2 ---YAB1          ------------>CBF ------>ZmHOX2a(1)    <-----------ARR10 ----------->GT1 -AHL20(2)    ---------->DOF2<---------ARR11(3)   <---------AHL20(2)      <---------ZAT6 >ATHB12--------->AHL20(2)   --------->ARR11(3)   --------->AHL20(2) <---------AHL20(2) -------ZAT6 --------->AHL20(2)==================HOX2a_HOX2a  ----------------->AGL3        ---------   gtgtaaaggataaaataaaagacaattacgtgatctcctccttcctatatatataaatgatcttcccatatttatagagtaaatcaaagaaaaaaaaaga  7419900                                                                                                 ----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                         --------->MYB46(3)                                                                                      <---------WRKY12                                                                                      <---------WRKY38(1)                                                                                  <---------ANAC58                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                 <---------ANAC58 <---------ANAC46                                                                 <---------ANAC46 <xxxxxxxxxxxxxxxxxx             <---------YAB1                                      <---------ANAC58 <---------ANAC58---         --------->GLK1(2)                                       =================================MYC_MYB         --------->ARR11(3)                     <------------CBF <---------TGA1a<---------TGA2(2)<---         <---------ARR11(3)          <---------GLK1(2)     --------->YAB1      ----------->TGA1------    --------->AHL20(2)             <---------YAB1  ----------->GT1          --------->ICU4------->GAMYB ----------->GT1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------At4g35610-------- ->DOF2 --------->RVE1(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46  <-------TEIL<---   agaagattaaaaatcttgattctatcgtctctccatcttgattctttgaaaattggtttaatcacagtcgtgtgagagatgatgacgttcaacgaccttc  7420000       <------MYB83      --------->MYB59      --------->MYB111(1)         ------>NtERF2   --------->ARR14(2)             --------->LBD16   <---------ARR14(2)            <---------RAP2.6(2)  <------ZmHOX2a(1)              <---------ANAC46 ----->HSFB2a(2)              <---------ARR14(2) -----LBD16                  <---------GLK1(1) >MYB83<------MYB46(1)      <---------ZAT6        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >MYB46(1)              xxxxxxxxxxxxxxxx>smallRNA(i) xxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                ---------->DOF2 xxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <------ZmHOX2a(2)      xxxxxxxxxxxxxxxxxxx ------>LBD16    --------->ARR11(3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxx ------HSFB2a(2) <---------ARR14(2)          --------->HSFB2a(2)                  <----------DOF2 --->MYB52(1)    <---------ARR11(3)          <---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->AtMYB61       --------->ARR14(2)  <----------DOF2    <---------YAB1         <---------ALFIN1<----- ------ANAC46  ----------->ARR10<---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxx   cggaggatttggtagtggagatactctctagagttccggctgtatttctagcacgattacgatcaacatccaaacgatggaacactttgatcaaagatgg  7420100                                    --------->ANAC58                                        ---------                                    --------->ANAC58         --------->YAB1                xxxxxxxxxx                                  xxxxxxxxxxxxxxxx>smallRNA(i)    ----------->GT1          <---------ANAC46                                 <---------ZAT18            <---------YAB1       --------->AGP1  <---                               --------->ANAC46          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------LBD16                  ----------------------->TaNAC69(2)    <---------WOX13(1)       --------->ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ATHB12           <---------ARR11(3) xxxx>smallRNA(si3)            --------->ANAC58      <---------YAB1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxx>smallRNA(si3)      --------->ANAC58 <---------ANAC46 <---------TOE1(3)<------ZmHOX2a(2) ----------------WRI1         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->DAG2 --------->GLK1(1)xxxx xxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------TOE2(3)--------->CCA1(2) <   gaaactttctaagaagcactcttctaatgctccaaggcactctatggctctcgtgttgattgatcataaggtttattcagtgagatccaatctccgtgga  7420200                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             ========================                                                                     <---------ICU4                                                                     <---------AHL20(2)                                                                     -------->HAHB4                                                                    <---------YAB1                                                                    --------->ICU4                                                                  <--------HAHB4                   <-                                                                  <---------ICU4                 xxxx                                                                  -------->HAHB4               ======                                                                  <--------ATHB1               ------                                                                  --------->YAB1               ------                                                                 --------->AHL20(2)            <-----        <---------ANAC58                                         <---------ATHB12              ------    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <---------ATHB51              ------   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---------YAB1                <-----   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------ARR11(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >LBD16 <---------ANAC58                               --------->ARR11(3) ----------->RAV1(1)  ------ xxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ATHB51 <xxxxxxxxxxxxxxxxx ------GLK1(1)--------------->AGL15             ---------->DOF2  --------->ICU4   ------------------- xxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxx -----------GT1           --------->YAB1     --------->TOE2(3) --------->YAB1------->GAMYB--------->ANAC46   attcacaatagcgttgctccatatgttaacataacatgtcattttagcctaaaagaacatctttctaataattattcaacagaagtcgatataggccacg  7420300                                                                                              -------                                                                                              <------                                   <------ZmHOX2a(1)        xxxxxxxxxxxxxxxx>smallRNA(i)      <------                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      -------                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ARR14(2)   <---------At5g28300      <---------ALFIN1              xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxx ====MYC_MYB                --------->AtMYB61            xxxxxxxxxxxxxxxx>smallRNA(i)       --------- ---------DOF2              --------->DEAR3(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------ xxxxxxxxxxxx>smallRNA(i) ------->TEIL           <---------MYB46(3)                >>>>>>>>>GATA-2 =========bZIP_DOF        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------HVH21  >>>>>>>>>GATA-4 --->ANAC58  <---------ANAC46     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --->ANAC58  <---------ANAC58     xxxxxxxxxxxxxxxx>smallRNA(i) <----------DOF2     >>>>>>>>>GATA-3 ----TGA1a   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->MYB55(2) <---------At4g35610   ------->GAMYB --->bZIP60(2)           --------->ANAC46   xxxxxxxxxxxxxxxx>smallRNA(i)           >>>>>>>>>GATA-1 --->TGA1a   <---------ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxx ----O2      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AtMYB61 <-----------RAV1(2) xxxxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(si3)--------->MYB46(3)  <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --->O2     <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2)xxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->TaNAC69(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46 --------->At4g35610  --------->MYB46(3)   tctttcactgcgatggcttattgctatgcaccaccaaggactatagactggtggtttggaatccgctttcaggtgaaacaaggtggattcaaccaagatt  7420400                                   ------>ZmHOX2a(2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <------ZmHOX2a(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     -                                 <---------ARR14(2)    <---------ARR14(3)                          <-          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ARR11(3)                          --       ---------->DOF2           <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <-     --------->ANAC46            --------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <-     --------->ANAC58            --------->ARR14(2)    --------->ARR14(3)                          <-     --------->ANAC58            <---------GLK1(2)     --------->ARR11(3)                 <xxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxx   <xxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1) --------->GLK1(2)     <---------YAB1     <---- -->ARR14(3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---GLK1(2)                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---ARR14(3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->ARR11(3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3)     ----------->ARR10      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxx -->ARR10 xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->WOX13(1)  <- ---ARR11(3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------NtERF2<xxxxxxxxxxxxxxxxxxxxx xxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ZmHOX2a(1) xxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgctacaagaaagatgactgctatgctctcggtagatcctcttgcaacaagtacaaaatcttgaggcagggtcgtcttatcaatcctagcgaagaacgt  7420500  Previous    Next  AGI:  At3g21170.1    Description:  F-box family protein. Identical to Putative F-box protein At3g21170 [Arabidopsis Thaliana] (GB:Q9LU43); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10190.1); similar to PpSFBB4-beta [Pyrus pyrifolia] (GB:BAF47182.1); similar to MdSFBB3-alpha [Malus x domestica] (GB:BAF47179.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 7419982    to: 7421166    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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