Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------WRKY12                                                                      <-----------HVH21                                                                     <------MYB46(1)                                                                     <------MYB83                                                                    --------->MYB59                                                                    <---------AtMYB61                                                                   <--------P                                                               --------->STY1(1)                                                            --------->ANAC58                                                            --------->ANAC58             --------->AHL20(1)          <---------TOE2(3)                           <---------AHL20(2)<---------WRKY38(1)          <---------TOE1(3)                   <---------ANAC46 <---------STY1(1)    >>>>>>>>>>GT-3b         ---------->DOF2            >>>>>>>>>>>>>>>>>LFY<-----------GT1--------->WRKY18(1)      -----         <---------DOF5.7(2) <-----------RAV1(1)<---------ANAC46<---------TOE2(2)----------->GT1<----   aaattaagagttaaagttttctaaaccaaaaatgttgcatccaatgggatgtgtatataaacaccctaggttggtcaagggagaagaaaaatatactatt  7398800                       <-----------GT1         --------->TOE2(3)         --------->TOE1(3)       <---------ARR11(3)       --------->GLK1(2)<-----------GT1--------->AHL20(2)        <---------At4g35610       --------->ARR11(3)<---------------AGL15             --------->YAB1 ------>GT1           <---------AHL20(2)                --------->YAB1                             -- -----ZAT6  ---------->DOF2<----------DOF2           <-----------GT1  ------>ZmHOX2a(1)            --   gttaaacaaaatcttaaagactaatttatctttttagcaaaaaaaattcgatttttaactataatcccgctcctagtcttggacaaacttcaaaaaaaaa  7398900                                                                                   <-------TEIL                            --------->ANAC46                                    ----------->GT1                            ----------->GT1                                <---------AHL20(1)                        <---------ARR14(2)      <---------ANAC55(2)        <---------AHL20(2)           <---------ARR11(3)--------->LBD16    --------->ANAC58           --------->AHL20(1)      <-     --------->ANAC46 ------->GAMYB---------->DOF2---------->DOF2          --------->AHL20(2)     <-- ------->TOE1(3)   ----------->RAV1(1)          --------->ANAC58        --------->YAB1     <--------- ------->TOE2(3)  --------->MYB46(3)            <---------YAB1       <----------DOF2--------->ATHB12-   accctaaacccaatatcacaacaacagaacccgaaaaaaaagaccacattacgaaagtagttttttttttgctttaataaaatggttcattagaagacaa  7399000                                                                      --------->ZAT14                                                                      <---------ZAT14                                       --------->ANAC46            ------>MYB83                                       --------->ANAC58            ------>MYB46(1)           --------->ARR14(2)          --------->ZAT6             --------->ANAC46 --------YAB1                          --------->ANAC58          --------->MYB46(3) -------ARR11(3)                      <---------TOE2(3)        <---------ZAT18 --------->ANAC46 -ID1     <---------CCA1(2)           <---------TOE1(3)    --------------->AtSPL8                   < -------->YAB1   ------>ZmHOX2a(1)   <-----------GT1       <---------------AtSPL8     ---------->DOF2   aatcatagtctcaaatctcctaaaaaaaaacatcacatttaacgctacaaaaaaacccaagttagtacccactactctctcacaaaacaaaagagcctct  7399100                                                                                 ------>ZmHOX2a(1)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR14(2)                                                                             <---------ARR11(3)                                                                             <---------ARR14(2)                                                                             --------->ARR11(3)                                                                            <---------GLK1(1)                                                                           ----------->ARR10                                                                          ===========================                                                                        --------->LBD16                                                                       <---------LBD16                                                                       --------->HSFB2a(2)                                                                       <---------HSFB2a(2)                                                                       <-----------RAV1(2)                                                                      ==================HOX2a_HOX2a                                                                      ------>ZmHOX2a(2)                                             ---------->DOF2         ===================HOX2a_HOX2a                                 ------------------------>ANAC81    <---------ARR14(2)                                 --------->ANAC58                   ------->TEIL ====================                               ---------->DOF2             ----------->HVH21--------->GLK1(1)        ------------>CBF      --------->AtMYB61          *TSS       --------->ARR14(2)   <<<<<<<<<TBF1  <---------YAB1 --------->ANAC58     <-----------GT1<------ZmHOX2a(2)             -- <<<<<<<<TBF1     ----------->HVH21     ---------->DOF2<---------At5g28300<------ZmHOX2a(1) <--------   tcttcttcttctcaatctctctgatagagaaaccaaagcaaaaaaagaaaagaaatttactgtgaccatggatccaggagatcctacttcgatacttttc  7399200                                                   <---------ANAC58                                      <---------ICU4                                      --------->ATHB12                                      -------->ATHB1<----------DOF2                 <---------ANAC58    <------ZmHOX2a(2)                <---------YAB1<---------ANAC46                 <---------ANAC46   <---------ARR11(3)               <---------ARR11(3)                      <---------ARR14(2)   --------->ARR11(3)  --------->GLK1(1)       <---------ANAC58             <---------GLK1(2) ==========HOX2a_HOX2a<---------GLK1(2)        <---------ANAC58             --------->ARR14(2) ==========HOX2a_HOX2a--------->ARR14(2)      --------->MYB52(2)      --------->ANAC58 -------->DOF2        <---------ARR14(2)  <---------MYB46(3)<------ZmHOX2a(1)       <---------ANAC58 --DOF2    <----------DOF2      --------->HSFB2a(2)<---------ANAC58   --------->ANAC58<---------MYB52(1)   acaaagatcagaactttagaaccagatttcgcttccaaaatcattggttacttgcttttacaggacttgggtaagacagatttgatgcgtttggctcttg  7399300                                                                --------->ARR14(2)                                                                <---------ARR11(3)                                                                ------->TEIL                                                      <-----------------AGL2                                                      <-----------------AGL3                                                   <----------DOF2        <---------At4g35610                                                --------->ARR11(3)     <---------At4g35610     ------                                     --------->ARR14(2)--------------->AGL15     --------->ANAC46   -                                     <---------ARR14(2)<---------------AGL15<----------DOF2    <-----                             ---------->DOF2    <---------ARR11(3)------>ZmHOX2a(2)           <------                         ---------->ID1       --------->MYB59   <---------ARR14(2)        ------->TEIL                     <---------MYB52(1)    <----------DOF2      --------->ARR11(3)       <-----------GT1   gaccagagactctcttgcagtccgtttgtctcaaagctaaatctgctttaggtctttcttctaatggatcttcttctgcttcttcgccattgaaccctat  7399400                     <---------MYB52(1)                                  ---------->ID1                    <-----------TGA1                                 <----------DOF2                    <-----------HVH21                           --------->ARR14(2)                   --------->DREB2C(2)        --------->LBD16   <---------ARR14(2) --->ARR14(2)    <---------At5g28300         --------->LBD16   <------ZmHOX2a(1)             ------>ZmHOX2a(1) -------->HSFB2a(2)--------->DEAR3(1)       <---------LBD16 <---------LBD16   ------>ZmHOX2a(1)  <--- ----ARR14(2)   <---------ALFIN1           <---------LBD16  <---------HSFB2a(2)            ---------- ---CCA1(2)    --------->MYB46(3)      <-----------HVH21    --------->HSFB2a(2)  <----------DOF2 ----   ctccagacccattaacatccaccgtcattctctctctcactcttcaccgggaaatgggttttcgaggaaccctttgtctccttcttttgctactcctggt  7399500                                                                            <---------ANAC46                                                                           <---------ZAT2                                                                        <---------At4g35610                                                                        <---------ZAT2                                                                        --------->At4g35610                                                                       <-----------RAV1(1)                                                                     <---------ZAT2                                                                     --------->ABI4(2)                    --------->ATHB12                          ----------->TGA1                   <---------YAB1                   <---------DAG2   <---------At4g35610         <-----------GT1                            <----------DOF2 --------->ALFIN1      --------->ANAC58                          ---------->ID1----------->HVH21      --------->ANAC58   <---------ANAC58       <---------CCA1(2)<---------DEAR3(1) <---------LBD16 --------->YAB1       --------->ANAC58      --------->At4g35610             <-------- ------ZAT18--------->TOE1(3)         --------->ANAC58      <---------At4g35610             --------- ->RAV1(2) --------->ZAT6<---------ANAC58    <-------TEIL <---------ANAC58 <---------At4g35610 ----->ZAT14--------->TOE2(3)         --------->ANAC46    <---------ANAC58<-----------RAV1(1)--------   tcactcggaagtaaccctaacatgatttcgagtccgtttcaagcaagttcgtctctttttgcttctgacggtgctgctgctggtgattccactggaaacg  7399600                                                  --------->HSFC1(2)                                                  <---------HSFC1(2)                                                  <---------HSFB2a(1)                                                  --------->HSFB2a(1)                                                 <---------ARR11(1)                                                 <-----------ARR10                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                 --------->GLK1(2)                <------ZmHOX2a(2)      ------>ZmHOX2a(1)               <---------MYB52(1)                         --------->ARR14(2) --------->GLK1(1)                  <---------ANAC58                     ------->TEIL <---------MYB52(1) <---------GLK1(1)                  <---------ANAC58                     --------->GLK1(2)        --- -ARR14(2)               <---------ZAT18        <---------ARR14(1) <----------ID1<---------ARR14(2) >ARR14(2)               --------->ZAT18    --------->MYB52(1)   --------->MYB52(1)------>ZmHOX2a(2) ->MYB52(1)  --------->At4g35610   ---------->ID1------->TEIL --------->YAB1 <---------LBD16      <--   gcgatttcctcgatgagcagcaactagggaactacttgtcgtttcttaacgaatcttcttcgaagaataacgacgaatctctggatccgtttgggttctc  7399700  Previous    Next  AGI:  At3g21100.1    Description:  RNA recognition motif (RRM)-containing protein. similar to nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G51520.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN62156.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 7399157    to: 7402442    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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