Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ALFIN1                                          <---------ANAC46                                        <---------ANAC58                                        <---------ANAC55(1)                                        <---------bZIP60(2)                                        <---------ANAC58                                        <---------TGA1a                                        <---------ANAC46                                        ==============================================bZIP_DOF                                        <---------O2                                     --------->ALFIN1                                   --------->ALFIN1                                   <-----------RAV1(1)            <---------ZAT14                                 <---------ANAC46                 --------->ZAT18 ----------->HVH21                                 <---------ANAC58    --------->YAB1  --------->ANAC58          ========================================bZIP_DOF --------->YAB1       <----------DOF2          <----------DOF2        <---------ANAC58  --------->ANAC58  --------->ANAC46  <---------AHL20(2)        ---------->DOF2        --------->ANAC58  --------->ANAC58    --------->AHL20(2) --------->AHL20(2)         ======================bZIP_DOF<---------ATHB12 <----------DOF2      -----   ttatataatatgctttaaaatcaatgtctgaaaagtcgtgtggcgtgtgtaacaagcacaatcacgagttcacgacccttttctttgacaatgaaatgaa  7365800                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                                <------MYB83                                                              --------->ALFIN1                     <---------AHL20(2)                    --------->DAG2                     --------->AHL20(2)               <---------AHL20(2)                    ------->TEIL               <-----------GT1                       --------->AHL20(2)              <---------ZAT14      <---------AHL20(2)                        <-----------GT1 <------MYB46(1)      <------ZmHOX2a(2) -->TEIL<-----------GT1                  <-----------GT1  ---------->DOF2           --------->ARR11(3)   cttgctattttttcttatcacatttttttatatttttcgaatatcacatttttcattttataaagtgggtattctctagtaatttagatcactgtatgtt  7365900                                                                                                 <---                                                                                                <----                                                                                                -----                                          <---------MYB46(3)                                  -------                           <---------AHL20(2)                                               <--------                           --------->AHL20(1)              ----------->GT1                 ------->TEIL                          <---------AHL20(2)               <---------ANAC58              <---------ZAT14                          --------->YAB1  <---------DEAR3(2)  --------->ATHB12      <------ZmHOX2a(2)                          --------->AHL20(2)      <----------DOF2                   --------->ZAT14                       <---------ICU4  ------->TEIL        <---------ANAC58         <---------ZAT14 -              --------->DOF5.7(2)    <-------TEIL<---------ICU4                   <---------At4g35610             --------->TOE2(3)    <---------At4g35610 <---------ANAC58            --------->At4g35610             --------->YAB1<---------AHL20(1)<-------TEIL  <---------ANAC46   <-----------HVH21 <----          --------->MYB52(1)      --------->At4g35610 <---------ANAC58 <---------YAB1    --------->ZAT14   cggatgaaaactcaacgataactaaaaattatattcagatgcatcggttcatcttttcgtagcgtgattagttctaatagggtcagatcactgaaccgga  7366000    ------>MYB46(1)    ------>MYB83  ------->GAMYB ---ZmHOX2a(2)                                                         --------->ARR14(2) -----ARR14(2)                                                         <---------GLK1(2) ---->ARR14(2)                         --------->ARR11(3)          <-----------------AGL1 -->LBD16                              <---------ARR11(3)         <<<<<<<ZML2                     --- -LBD16--------->AHL20(2)          ---------->DOF2     --------->ARR14(2)                         <-- ------->P                   <---------MYB52(2)        <---------ARR14(2)                         <-- -------ARR10             --------->MYB46(3)          <---------CCA1(2)<---------ARR14(2)    --------   tcaacccacttaaattgaaccagatagaaccactaacaaaagaacttattccagttatatccgaactagaaccgattcggaaaccgagccattactgatt  7366100                          <---------AHL20(2)                   <---------TOE2(3)           --------->ANAC58           <---------ANAC55(2)           --------->ANAC46           --------->ANAC55(1)                               <-----------HVH21           --------->ANAC55(2)                          ---------->DOF2 -------->GT1      <---------TOE1(3)                    =======================bZIP_DOF ----MYB46(1)   --------->ICU4  <------MYB46(1)   <---------AHL20(2)               --------->KAN4(2) ----MYB83 ----------->GT1<---------YAB1         <---------AHL20(2)           ----------->GT1 ->ATHB12  --------->ANAC58     <------MYB83     --------->AHL20(2)  <---------TGA1a   tggtgatttcaaaacgtaattagggtttataatttggtttactgagactaaataaatagaaagtgtcactgatgtgagaatagtttattcgcatttcgcc  7366200                                                                         ----------->HVH21                                                                     --------->CCA1(2)                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                  ---------->TaMYB80                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                  <---------KAN4(2)                                                              <------NtERF2                                                              --------->RAP2.3(1)                                                              --------->ATERF1(1)                                                             ------>NtERF2                                                             <---------ORA47(2)                                                             <---------DEAR4(2)                                                             <---------RAP2.3(1)                                                             <---------ERF1                                                             <---------ATERF1(1)                                                            --------->DEAR3(1)                                                            <---------RAP2.3(2)                                                            <---------ANAC46                                                            <---------RAP2.3(3)                                                            --------->ATERF1(2)                                                            <---------ATERF1(2)                                                           --------->RAP2.3(1)                                                           --------->ATERF1(1)                                                           --------->DEAR4(2)                                                           --------->At4g35610                                                           --------->DREB2C(1)                                                           <------NtERF2 --------->ANAC58                                                           <---------At4g35610                                                           <---------ABI4(1)                                                          <---------RAP2.6(1)                                                          <---------RRTF1(1)                                                          <---------ORA47(2)                                                          <---------DEAR4(2)                                                          <---------ERF1 --------->ANAC46                                                          <---------RAP2.3(1)                                                          <---------ATERF1(1)                                                          ------>NtERF2--------->ANAC46                                                         <---------DREB2C(2)                                                         <---------RAP2.3(3)                                                         <---------ANAC46--------->ANAC58  ----------                *TSS                                     <---------RAP2.3(2)             <---------At4g35610          <---------KAN4(2)                              <---------RRTF1(3)              --------->At4g35610      <------ZmHOX2a(1)                                  <---------DEAR3(1)      <---------MYB52(1)     --------->LBD16                                     <---------ATERF1(2) ------>NtERF2 --------->WRKY12    --------->LBD16          ---------->DOF2             --------->ATERF1(2)<---------DEAR3(1)   --------->HSFB2a(2)  ----------->GT1      <---------MYB52(1)<---------ANAC46 <-------GAMYB   <---------HSFB2a(2) ----------->GT1      <-------GAMYB<---------RAP2.6(2)--------->DEAR3(1)-------   <---------LBD16  ---------->DOF2     ------------>AtMYB77<---------DEAR3(1)<------NtERF2--------->WRKY38(1)   <-----------RAV1(2)<---------TOE2(3)----------->HVH21 <---------RRTF1(2) --------->ANAC46  -------   tctctccaggagaatatacagaaaaaggtttaaaagaaacactgacagttagggctatggcggcggcgaatatacacgacgccgttgtttccgatgacct  7366300                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                                                                  <---------ARR14(1)                                                                                 --------->LBD16   --                                                                               <---------LBD16     --                                           ---------->DOF2                    --------->MYB52(1)  ---                                       ------->GAMYB                         <---------ALFIN1--------                                  <---------MYB52(2)                      --------->PCF2    <--------      <---------GLK1(1)        <---------ZAT14                           --------->GLK1(1)  <-------- ->HVH21                       --------->ZAT18    <----------DOF2  --------->MYB52(1)<-------TEIL <-- ---->RAV1(2)                  --------->ZAT14 <------ZmHOX2a(1)--------->HSFB2a(2)<---------ARR14(2) -->At4g35610       <---------ATHB12--------->MYB52(1)          <---------HSFB2a(2)--------->ARR14(2)   gaactatgaaatctgggctccaatcgcgaaaactacactaacggagaaaggactttgggatgttgtcgagaacggagtcccaccggatccatcgaaggtt  7366400          ----------->HVH21      <---------At4g35610      --------->At4g35610                                ---------->DOF2 <---------ZAT6                                       <------NtERF2 ->HSFC1(2)                                          --------->LBD16 --HSFC1(2)                                         <---------ANAC46                                < --HSFB2a(1)                                       <---------LBD16                                  < ------------------->WRI1                       ------>ZmHOX2a(2)                                   - ------->LBD16                                 <------ZmHOX2a(2)                                 ---- ------>HSFB2a(2)                             --------->ARR11(3)                                 ---- ->HSFB2a(1)                                  <---------ARR11(3)                                 <--- -TOE2(2) --------->DEAR3(1)                  --------->ARR14(3)          ----------------->AGL3<---- -TOE1(2)--------->At4g35610                 <---------GLK1(1)         --------->ZAT18        ------- -------HSFB2a(2)                            --------->GLK1(1)    ---------->DOF2 <-----------GT1----   ccagagttagcagcgacgattcaagccgaagagttttcgaaatggagagatctcgcggagaaagacatgaaagcgctccaaattttgcaatcttctctca  7366500          <---------LBD16       <----------DOF2     <---------At4g35610 --------->GLK1(2)                                               ----------->GT1 ---------ARR14(2)                                              --------->DAG2 ---------GLK1(2)                                   --------->GLK1(2)                        <------MYB46(1) -------->ARR14(2)                                 --------->ARR14(2)                        <------MYB83 ----->ANAC55(2)                         <------ZmHOX2a(1)     --------->DAG2               <-------- ----->ANAC58                          --------->ANAC58  <---------HSFB2a(2)                <-------- ------ANAC55(2)                       --------->ANAC58  --------->HSFB2a(2)   --------->ANAC58 -----LBD16                 <----------DOF2        <---------GLK1(2)           --------->ANAC58 ---->HVH21               <---------At4g35610<----------DOF2  ---------->DOF2 --------->TOE1(2)   <-- ----->ANAC58<------ZmHOX2a(1)     ------>NtERF2   <---------ARR14(2) --------->ICU4<-----------ARR10   cggattctgctttcaggaagactctctccgcttcttcggccaaggacctttgggattctctcgaaaaaggtaacaatgaacaagcgaaactacgtaggtt  7366600                                           --------->KAN4(2)                                           --------->WOX13(1)                                         <------ZmHOX2a(2)  --------->ANAC58                 --------->ARR14(2)                                  <------NtERF2  --------->ANAC58                 <---------ARR14(2)                                 <---------RAP2.3(1) -TOE1(2)     <---------ARR11(3)================HOX2a_HOX2a                           ------>NtERF2-- -TOE2(2)     --------->ARR11(3)<------ZmHOX2a(1)                                    <---------ANAC46 -------HSFB2a(2)      <---------YAB1    <---------ATHB12                  --------->WRKY12     <----   agagaagcaattcgaagaacttagtatgaatgaaggagaaccgatcaatccctacatagatagggttatcgaaatcgttgaacagttgcgccgtttcaaa  7366700  Previous    Next  AGI:  At3g21010.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.6e-15 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 7366216    to: 7367754    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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