Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->TOE2(3)                                               <---------------AGL15                                               --------->YAB1                                              >>>>>>>>>MYB98   <-----------GT1                        <----------DOF2 --------->AHL20(2)                       --------->TOE2(3)                                        <- ---->YAB1     --------->ANAC58           --------->TOE1(3) <---------CCA1(2)               <-------- ---->AHL20(2) --------->ANAC58 --------->TOE2(3)       <---------ANAC46                 <---------WOX13(1)   aaattaaacccatcgcaacgctacaaatttctaacatcaataaactttaacataaatggtgtttatcttcgtagagagaaacatttttgggattgctatt  7362700                                                                                        <---------TOE2(3)                                                          ----------->GT1              ---------->DOF2 --------WOX13(1)                                      <---------AtLEC2             --------->TOE2(3) -YAB1           --------->ZAT14   ---------->DOF2     <---------ANAC46       <---------ICU4    -----   gatagattataggttatactatagtctataaaactaagaaagaacattttaaacttggcatggaaaattgcaaatgcaactcattacattaaagttttga  7362800                                                        <-----------TGA1                                                      <-------TEIL                                                   --------->ZAT2                             <------          <---------ALFIN1                         --------->HSFC1(2)                         <------          --------->AtMYB61                        <---------ZAT2                             <------         --------->MYB46(3)                        <---------HSFC1(2)                     <-------MYC2        ------>NtERF2                             ------->TEIL                   <------ZmHOX2a(2)      --------->MYB46(3)                       <---------TGA1a                   ====================    --------->ANAC46                           <---------O2                      ====================    --------->ANAC58                           --------->O2                     --------->ARR11(3)    --------->ANAC58                           --------->TGA1a                  <---------ARR11(3)   ------->MYC3                                --------->ANAC58           --------->YAB1  ------->MYC2   ------->PIF5                                ===============================bZIP_DOF    <-------MYC3   ------->MYC2                                --------->ANAC58          <---------YAB1   ------->MYC3   <-------MYC2                                --------->ANAC55(1)     --------->YAB1    --------->ANAC58   <-------PIF5               ----------->HVH21--------->ANAC55(2)    <---------YAB1     --------->ANAC58   <-------MYC3             --------->At4g35610--------->ANAC46    ================================== ----->DOF2                 <---------At4g35610<---------ANAC55(2) <----------DOF2<---------ICU4   aagcacgagccaccacttcccttccatttttgctgacacatattgacacacgtagcttcgtcacaatctcttttcattataagatcatggcacgtttctt  7362900    --------->O2    <---------ANAC58    ==============================================bZIP_DOF       <<<<<<<<<NAM    <---------ANAC58                                        <-----------GT1                   <------    --------->TGA1a                                        <-----------GT1             --------->YAB1 ------>ZmHOX2a(1)                     ---------->DOF2    --------->AHL20(2)          <---------YAB1 ---ANAC58                      <---------AHL20(2)        <---------AHL20(2)         --------->AHL20(1) ---ANAC46  <---------TOE1(2)<---------ICU4         --------->YAB1                   <---------AHL20(1) ---ANAC58 ------>ZmHOX2a(1)--------->AHL20(2)      --------->TOE2(3)                --------->AHL20(2) =======HOX2a_HOX2a         <---------ATHB12       ----------->GT1  <----------DOF2  <---------AHL20(2) =================HOX2a_HOX2a<---------AHL20(2)   ------->TEIL--------->YAB1        --------->YAB1 =============bZIP_DOF --------->TOE2(3)       <---------YAB1<---------YAB1        <---------YAB1   gtcctcgcgtctccttcgttccaatccctaataaatatttgaaaagcttacgaatgttaatttatcatccctttaatataaacttattataatatgatgt  7363000                                                                                     <----------DOF2                                                                        <----------DOF2                                                <---------ICU4         <---------ANAC46                         --------->ANAC58       --------->YAB1         <---------ANAC58                         --------->ANAC58    --------->YAB1            <---------ANAC58      ------->TEIL                  ---------->DOF2   <<<<<<<ZML2--------->ICU4         <------NtERF2<---------YAB1      ----------->GT1  ---------->DOF2    --------->YAB1         ----------------------->TaNAC69(2) ---YAB1      --------->TOE2(3) --------->TOE1(2)    <---------YAB1 <---------RAP2.6(2)   <---------YAB1   taagagaatggtaaaaacttaaaagtaaagcaaacctagaacaaggataatcatgaagatagcaagaatggtggctttgtaagtcatctttgatgaatat  7363100                                                                      ----------->TGA1                                                                    <---------ICU4                                                      <-----------HVH21                                         ------------>CBF          <---------ATHB51                     ----------->GT1    --------->ANAC46       ------------>CBF                   ---------->DOF2      --------->ANAC58      --------->ANAC46                   <---             --------->ARR11(3)         --------->ANAC58     <-------TEIL                        ----             <---------GLK1(2)    <-----------TBP    <------MYB46(1)--------->YAB1          ---------             <---------ARR11(3)   --------->AHL20(2) <------MYB83  <---------ATHB12      <---------HSFB2a(2)         ---------->DOF2   <-----------GT1          --------->MYB59--------->ICU4   --------->YAB1---   acaaactgaaataaagattttcaaagtaaaaaccatatatataggcaatttagctaggtcacatacacaataatgacgaaaatcatttatactagaaaga  7363200                                 ----------->GT1                                 --------->LBD16                                ----------->GT1                                            --------->AHL20(2)                                <---------HSFB2a(2)                           <---------------AGL15                                --------->HSFB2a(2)                  --------------->AGL15--------->AHL20(2)                               <---------LBD16                       <---------------AGL15<---------AHL20(2)      <---------ZAT14          ------>ZmHOX2a(2)                  <-----------GT1    ----------->GT1     <<<<<<<<<<<<<<<<<LFY     <------ZmHOX2a(2)               <---------AHL20(2)    --------->ANAC58    --------->ZAT14          <---------ARR14(2)              <---------AHL20(1)     --------->ANAC58    <---------ZAT14          --------->ARR14(2)      <---------TOE2(3)    --------->AHL20(2)   <----- ------GLK1(1)        <------------CBF  --------->YAB1       --------->AHL20(1)   --------->MYB52(1)- ----->GLK1(1)   <---------AHL20(2)     --------->AHL20(2) <---------AHL20(1) --------------->AGL15 - ->DOF2    ----------->GT1  <---------GLK1(1)--------->YAB1--------->AHL20(1)XXXXXXXXXXXXXXXXXXXX>MIR420 ------>GLK1(2)  --------->AHL20(2)   --------->AHL20(2)  --------->AHL20(2) ----------------->AGL2 -   aatctgtgaacagtggaaaataaatattggagatcgggaaaataatatcaaaattaagaaatatatatttactaaataaactaaaaacggaaataaataa  7363300      --------->YAB1                                     <---------AtLEC2     <---------ATHB12                              --------->AHL20(1)     --------->AHL20(2)                            <---------AHL20(2)     --------->ICU4                                --------->AHL20(2) ------->GAMYB<---------GLK1(2)                   <---------AHL20(2)               <---------WRKY18(1) ------------>CBF                                 --------->AHL20(2)          <---------MYB52(1) ------GT1    --------->ARR11(3)           --------->AtLEC2              <-----------GT1 -------->ANAC46               <---------ARR11(3)<---------AHL20(1)      <---------ARR14(2) -------->ANAC58               --------->GLK1(2) --------->AHL20(2)      --------->ARR14(2) -------->ANAC58      ----------->HVH21 <-------TEIL   <-----------GT1  <---------CCA1(2)        <---   caacgcaataaatatagatactgtatgacacaaaatctaaaattcatgcaaaataatttacatggttagcctttgtatccgttcttgacccatattgttc  7363400                      <---------MYB46(3)                      --------->MYB111(1)                      --------->MYB55(2)                                                <------------                      --------->MYB46(2)                  --------->YAB1               ==============                      --------->MYB111(2)          --------->ARR14(2)                  --------------                      --------->MYB52(2)         <---------ANAC58                   --------->GLK1(1)        <---------WOX13(1)      <---------AHL20(2) <---------ARR14(2)           <---------TOE2(3)    --------->At5g28300<-------GAMYB             <---------ANAC58               <---------TOE1(3)----   <----------DOF2  <---------MYB52(1)<---------ANAC46 <----------DOF2     <---------ZAT6    -------- -------DOF2        <--------P<----------DOF2 --------->ALFIN1     <----------DOF2<------ZmHOX2a(1)   tttcgctgtaattgatatttgggttagttgggctttaattttgtgtaagtggggttcctttcacaattcctttaagagagttaaggatgtccaaaaaaag  7363500                                                                                    <-----------GT1                             --------->AHL20(2)                                  <---------ARR11(3)                             <---------AHL20(2)     <-----------GT1              --------->ARR11(3)                         --------->AHL20(2)        <---------GLK1(1)             --------->AHL20(1)     <-----------GT1    <---------AHL20(1) <---------AHL20(2)                   --------->AHL20(2) -- ---AGL15               <---------AHL20(2)<---------AHL20(2)                  --------->AHL20(2) ---- ================================================================================MADS_MADS  --------- --->AGL3               --------->AHL20(1)<---------AHL20(1)            ----------->GT1     <-------- ------->GT1         --------->AHL20(2)   --------->AHL20(1)     ==================================== -->DOF2          <----------DOF2         --------->AHL20(2)     --------------->AGL15 <----------DOF2   agaaaatttacaagtttagcctttaaaatatttatatactgaaataaaattgaatttccctccaaaacattttttagtaaaaatatatactttgccatct  7363600  Previous    Next  AGI:  At3g20997.1    Description:  LCR55 (Low-molecular-weight cysteine-rich 55). Identical to Putative low-molecular-weight cysteine-rich protein LCR55 precursor (LCR55) [Arabidopsis Thaliana] (GB:P82769); similar to LCR56 (Low-molecular-weight cysteine-rich 56) [Arabidopsis thaliana] (TAIR:AT3G20993.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 7362749    to: 7363087    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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