Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            ----------->GT1        --------->ARR11(3)      ---------->DOF2    --------->YAB1       ------>ZmHOX2a(1) ------>ZmHOX2a(1)--------->ARR11(3)                                  --------->ANAC55(2)      ------ ------ARR14(2)   --------->AHL20(1)              <----------DOF2 <----------DOF2          ---------- ----->ARR14(2)   <---------ARR11(3)     --------->YAB1     --------->ANAC46           xxxxxxxxxxxxxx ----->ARR11(3)   <---------AHL20(1)  --------->WOX13(1)    <---------YAB1            ---------->DOF2 ->GT1 --------->YAB1    <xxxxxxxxxxxxxxxxsmallRNA(i)     <-----------GT1 <---------ARR11(3)---------   atcctcttataatcttgtaaaatattcctagttacaaagtcattcacaatctctttttttttacgatactttacatgattttagtttgtaaagaaaagtg  7355600                                  --------->TOE2(3)                                 --------->ATHB12                                 --------->YAB1                            --------->AHL20(2)                            <---------AHL20(2)                        --------->AHL20(2)                        --------->ATHB51   --------->YAB1                        <--------ATHB1    <---------YAB1                        <---------AHL20(2)<---------ATHB12                       <---------ATHB51   <<<<<<<<<ARR2                       --------->ICU4--------->YAB1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <----                  --------->ZAT6 <---------ICU4                                                ------     --------->YAB1    <---------ATHB12   <<<<<<<<<ARR1                                      <------- <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         xxxxxxxxxxxxxxxxx ----->GT1     <---------ATHB12 <---------ATHB12   --------->ATHB12              <---------AHL20(2) >DOF2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DAG2 xxxxxxxxx>smallRNA(se3)<---------ICU4  --------->WOX13(1)                       --------->AHL20(2) >DAG2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------TEIL         --------->ZAT6    <----------DOF2   tataaaatcataaaccaataacacaataatttaaatcattaacaatcatagattcatttgttttagttgaataacacaaaaattttaatgactttattaa  7355700                                                                         <----------DOF2                                                                         --------->TOE1(3)                                                                      ------>MYB46(1)                                                                      ------>MYB83                                                                    --------->AtMYB61                                                                    <---------MYB111(2)                                                                    <---------MYB46(2)                                                                   --------->ANAC46                 -                                                                   --------->ANAC58           -------                                                                 --------->ZAT6               -------                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-     xxxxxxxxxxxxxxxx>smallRNA(si3)          <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <--    ------->TEIL                  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------- <---------YAB1                  --------->AHL20(2) --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----TOE2(3)      --------->ARR11(3)    <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---- ---->DOF2         <---------ARR11(3) <-----------GT1   <---------ARR11(3)   ---------->DOF2<-------- --YAB1      XXXXXXXXXXXXXXXXXXXX>MIR1888<---------DAG2 --------->GLK1(2)--------->TOE2(3)<---------AHL20(2) xxxxxx>smallRNA(si3)          <----------DOF2     <---------ATHB12--------->ANAC58      --------->AHL20(2)   agtatgaatctaataactcaagatttatgaagactttaaattactttttacaaatcaaaatctaataacaccaaactttaaaagagtcttataaaatctt  7355800       --------->ZAT6                                                          <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1                    ------>MYB46(1) -------->AHL20(2)                   --------->AHL20(2)                 ------>MYB83 -->YAB1                           --------->TOE2(3)                   <---------ALFIN1 -->TOE2(3)                       --------->ATHB12                    --------->MYB46(3) --------WOX13(1)   ------------>CBF<---------YAB1                   --------->ANAC58 ----------CBF     <-----------GT1<---------ICU4            ------------>CBF <---------YAB1 >ARR11(3)   --------->ARR11(3)   --------->YAB1 <---------AHL20(2)  --------->ANAC58 -----YAB1   <---------ARR11(3)  <---------ATHB12--------->AHL20(2) ------->GAMYB <---------AHL20(2) -ARR11(3)   <---------GLK1(2)   --------->ICU4  ----------->TBP<---------ATHB12----------->TBP   <--   aattgaataacacaagatttttcacaatatttcaaatcattaaaaatccatataaatcacaaaccaataacacccacttattatataaacaggggatgat  7355900                                                             ------>NtERF2--------->At5g28300                                                           <---------ANAC58                                                           <---------ANAC46   --------->ARR14(2)               ----------->GT1                             <---------ANAC58   <---------ARR14(2)          --------->HSFB2a(2)                             --------->At4g35610 ------->TEIL          <---------HSFB2a(2)                      --------->MYB52(1)   --------->ALFIN1      <---------GLK1(2)                         --------->TOE1(3)     <---------ANAC58             <- -------AHL20(2)         --------->ANAC46       --------->TOE2(3)     <---------ANAC58        -------   tttattcagtttctcgagggaaaatatacagaataaaacgttttaagaaaccctaacagttgctggctatggccgtggtgaatcttccgactctacaaga  7356000                                                                                                   --                                                                                                 <---                                                                                               <-----                                                                                           --------->GLK1(1)                                                                                          <---------GLK1(2)                                                                                       --------->ANAC58                                                                    <----------DOF2    --------->ANAC58                                                                 <------ZmHOX2a(1)     <---------ANAC55(2)                     --------->ANAC46    <---------YAB1      ---------->DOF2           --------->ANAC46                     --------->ANAC58  --------->YAB1    --------->LBD16               --------->ANAC55(2)       --------->At4g35610             <---------ICU4   <---------ANAC46              <---------LBD16       <---------At4g35610            --------->ICU4   --------->At4g35610        <---------------AtSPL3 --------MYB52(1)    --------->ANAC58 <---------ATHB12 <---------At4g35610        <---------------AtSPL8 -->ANAC46  ------->TEIL            --------->WOX13(1) <---------LBD16         <-----------HVH21-----   cgttgtttccgatgaacttaactacgaaatatgggctccaatcatgaaaactagtttagcggagaaaggactttgggacattgtcaagtacggaatccca  7356100                                              <---------ARR11(3)        --------->At5g28300                                              --------->ARR11(3)       ----------->GT1                                         --------->TOE1(2)           <---------LBD16                                        --------->ANAC58         <---------ARR14(2)              <---                                        --------->ANAC58         --------->ARR14(2)             <----                                   <-------TEIL                  --------->GLK1(2)           <-------      <---------YAB1              --------->CCA1(2)     <---------AHL20(1)                --------->ANAC58 --------->ARR14(2)               --------->ARR14(1)    --------->ARR11(3)                --------->ANAC46 <---------ARR14(2)              --------->ARR14(2)     --------->AHL20(1)             --------->ZAT18 ------->LBD16     <---------ZAT6--------->ARR11(1)     <---------ARR11(3)             <---------ZAT18 ------LBD16 --------->GLK1(2)   <---------GLK1(2)   <---------------AGL15        --------->ANAC58 ----ALFIN1--------->HSFB2a(1) ----------->ARR10 <----------DOF2<---------GLK1(2) --------->ANAC58 ---->MYB52(1)   --------->LBD16 <---------ARR14(2)  --------------->AGL15 ---------->DOF2--------->ANAC58   ccggatttatcaaagattccagagttagcgaccaagattcgaacccaagacctttcaatatatagagattctgcggtaaaagacacgaaggcactccacc  7356200                               ---------->DOF2                                                -------                              --------->LBD16                                                 -------                             --------->HSFB2a(2)                             ---------->DOF2  -------                   --------->GLK1(2)                                     <------MYB83       ---------                   --------->ARR14(1)                                    ----------->GT1   <-------TEIL                  <---------GLK1(2)                                      <------MYB46(1)--------->ANAC55(2)                  --------->ARR14(2)                                    --------->MYB59 <---------ANAC46                  --------->ARR11(1)                           <----------DOF2          <---------ANAC58      <---------ICU4<-------TEIL                            --------->ARR11(3)          <---------ANAC55(2) -------DOF2      <---------ARR14(2)                        <---------ARR11(3)          <---------ANAC58 -----DAG2      <---------TOE1(2)                 --------->ZAT14    --------->ARR14(2) <---------ANAC55(1) --ALFIN1 ---------->ARF1    <---------HSFB2a(2) <-----------HVH21   <---------ARR14(2)--------------   ttttgcaatcttttctcccagattcggttttccgaaagacactggaaaccacttcagccaaacatctttgggatttggtaaaagaagattacgtacaagc  7356300                                                                        <---------GLK1(1)                                                                        --------->CCA1(2)                                                          <------NtERF2--------->ARR14(2)                                         <---------ATHB12----------->RAV1(1)                                        --------->ANAC58<---------ETT(2)--------->GLK1(1)                                    --------->ANAC58    ----------->HVH21                               <-------MYC3            --------->RAP2.3(1) -->ANAC58                     ------->MYC3           ------>NtERF2 <---------TOE1(3) -->ANAC58         <---------ANAC55(2)  --------->ANAC58--------->DEAR3(1) -->ANAC46         ----------->RAV1(2) --------->WOX13(1)------>NtERF2 <---------ARR14(2)      <----- ->DOF2          <-----------GT1    --------->ANAC58  --------->LBD16 <------ZmHOX2a(1)  ------------ ->AtSPL3----------->GT1    <---------ALFIN1        <---------LBD16 <---------TOE2(3)    <---------ICU4   caagttagggatggagaaattacctgagtaccacatgttcgcaatcaatgttcttccggcgacatttgataaggatatgtggatgatatactcagtacca  7356400                                                             --------->MYB52(2)                                                           <--------P                                                         <---------ZAT6                                                        <---------TOE1(3)                                                    <---------ZAT2                         ----------                                                    --------->ZAT2         --------------->AtSPL3                                                    <---------STY1(2)      <---------------AtSPL8          ------>ZmHOX2a(2)      <----------DOF2    --------->STY1(2)      --------------->AtSPL8 ----ALFIN1                   <---------ALFIN1 --------->MYB52(1)----------------->AGL3    --------->MYB52(1) --->AtSPL8                <-----------GT1   --------->KAN4(2)   <-------TEIL  --------->ZAT14   cttctcatatgatccatataagaagtatttcaccactttggatagaacataccgagctagggttagtttcatatttggaagtactctcatggctaaagga  7356500  Previous    Next  AGI:  At3g20980.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77122.1); contains domain GAG-POL-RELATED RETROTRANSPOSON (PTHR11439) Range:  from: 7355969    to: 7357972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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