Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-----------GT1 ----->YAB1                                           <---------MYB52(1)              --------->At4g35610 -----ATHB1                  --------->ANAC58   <---------ANAC58                      <---------At4g35610 -----YAB1                 ---------->DOF2 <----------DOF2<------ZmHOX2a(1)   <---------YAB1 -----ATHB51  --------->YAB1 --------->ANAC58   <---------ANAC58 --------->ICU4--------->ATHB12     <   aatagactgttttacatcatcatgtagttcaaagcaagagagagacttttgcctgcgttaggatgccatgttgatttagtatgatttcatctgtctagtt  7354900                                                                          <---------LBD16                                  <----------DOF2              <---------DAG2                                  ------>ZmHOX2a(1)            <----------DOF2  --------->ARR11(3)                                 --------->TOE2(3)            <---------ANAC58  <---------ARR11(3)                              <-----------GT1                 <---------ANAC58 --------->GLK1(1)           --------->YAB1    <-----------GT1                 ---------->ID1    <---------GLK1(1)    <          <---------YAB1    <---------AHL20(2)  <---------------AtSPL8    --------->LBD16           <   <---------At4g35610  --------->YAB1          --------------->AtSPL8   <---------ANAC46   --------- ---------MYB52(1)     <---------YAB1 ---------->ID1  --------->ICU4    <---------LBD16     <--------   tagttagcttctatcatagtctcttatcattttatcctttgtctcatagtttagtacttatttggctttttgactacggggaaatcttgtcttcggctgt  7355000                                 --------->DAG2          --------->MYB46(3)    ---------->DOF2 <---------YAB1             <-------TEIL                ---------->DOF2         --------->ALFIN1 ---------TOE1(2)         --------->ARR14(2)  --------->CCA1(2)           <---------YAB1 ---------TOE2(2)  ---------->DOF2  ----------->GT1   <---------YAB1     --------->TOE2(3)         <- >At4g35610--------->YAB1 <---------ARR14(2) --------->ARR11(3)       <---------ARR14(2)     <------- -At4g35610<---------ICU4 <---------GLK1(2)  <---------ARR11(3)       --------->ARR14(2)     <-------   cttatgtttgtaatcaccacaagaagcggattcgtaaagggtaatgagatataggtatgaaaggggagagtgtattctcaatgtggaggtaaatggcatg  7355100                               --------->ANAC55(2)                               --------->ANAC58                               <---------ANAC55(2)                        ------>ZmHOX2a(1)               <---------At4g35610                                   <------MYB46(1)        ---------               --------->At4g35610                                   <------MYB83           <--------            <---------At4g35610--------->ANAC46                  <-----------RAV1(1)        ---------  ---------->DOF2  ---------->DOF2     ----------->RAV1(2)   <---------ATHB12              <---------ARR14(2) ---------DOF2----------->RAV1(1)      <---------ANAC55(2)  --------->ANAC58               --------->ARR14(2) --ANAC58   --------->At4g35610--------->ANAC58             --------->ANAC58----------->HVH21 --ANAC58<---------ZAT14    ----------->TGA1               --------->WOX13(1)      ----------->HVH21   tctttaaagactgtagcagcagaaagaagaatgacgcaattacctgagtatcaaatgttagcaatcaatgttggtcctgtgacatttgacaaggatatgt  7355200                      ----------------->AGL3                      <---------ATHB12       --------->ANAC46                                                                            --   --------->CCA1(2) ------>MYB46(1)                                          <---------ZAT2     <--- >GLK1(1)            ------>MYB83                    <-----------GT1      --------->ANAC46 <-------TEIL -GLK1(1)            -------->P          <---------YAB1              --------->ZAT14 <------ZmHOX2a(2) >CCA1(2)          <---------MYB111(2)------>ZmHOX2a(1)     --------->ZAT14   --------->ZAT2     ----   ggatgatatacaccagtacctccaaccatatatatgactccttatgagaagtatttcaccactatagacagaacacacagagctcggatcaaattcatca  7355300                                                   <-----------ARR10                                      <---------ANAC55(1)     ----------->GT1                                      <---------ANAC46       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->YAB1              <---------ANAC58      <---------ANAC58    --------->GLK1(2)                 <---------ANAC58      <---------ANAC58   --------->KAN4(2)              <---------HSFC1(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->HSFB2a(1)           <--------P   ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------HSFB2a(1)         <------MYB83   *TSS <---------CCA1(2) ------->LBD16                <------MYB46(1)--------->bZIP60(1)         ----------->GT1 ------LBD16                  ----------->GT1<---------bZIP60(1)       <------------CBF ----->At4g35610             <---------AtMYB61<-----------HVH21<-------GAMYB   <----------DOF2     <-   ccggacattctatcatgtctgaaggaatgggatggtagtttcgtgtgatgtcaaatcttagggggtgttattagattgtgactttgaaagagttttaatg  7355400                                                                                                 ----                                                                                       --------->AHL20(1)                                                                                       <---------ARR14(2)                                                                                       <---------AHL20(1)                                                                                       --------->ARR14(3)                                                                                       <---------ARR14(3)                                                                                       --------->ARR11(3)                                                                        <---------ICU4 --------->ARR14(2)                   ----------->GT1   <---------AHL20(2)                 --------->YAB1 <---------ARR11(3)       --------->AHL20(2)            --------->AHL20(2)                 --------->ATHB12   ----------     --------->AHL20(2)          --------->ARR11(3)                    <---------YAB1 <---------CCA1(2)     <---------AHL20(2)--------->AHL20(2)                 <---------ANAC46    <---------DAG2     <--- ---------DOF2---------->DOF2    <---------ARR11(3)       ----------->GT1     <----------DOF2    ----   actttaaaaaaatatagaaagtagataaaatgaaagattttaaatgatttttagagagttttgtataatctctatgattacttttccaatatcttgtaaa  7355500                         <xxxxxxxxxxxxxxxxsmallRNA(i)            ----------->GT1        --------->ARR11(3)      ---------->DOF2    --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ZmHOX2a(1)<---------ARR11(3)                                  --------->ANAC55(2)      ------ ----->ARR14(2)   --------->AHL20(1)                        <---------YAB1                 ---------- ->GT1 --------->YAB1    ------>ZmHOX2a(1)        <----------DOF2 <----------DOF2      xxxxxxxxxxxxxx ------ARR14(2)   --------->ARR11(3)     --------->YAB1     --------->ANAC46          ---------->DOF2 ----->ARR11(3)   <---------AHL20(1)  --------->WOX13(1)  <-----------GT1 <---------ARR11(3)---------   atcctcttataatcttgtaaaatattcctagttacaaagtcattcacaatctctttttttttacgatactttacatgattttagtttgtaaagaaaagtg  7355600                                  --------->TOE2(3)                                 --------->ATHB12                                 --------->YAB1                            <---------AHL20(2)                            --------->AHL20(2)                        --------->AHL20(2)                        --------->ATHB51   --------->YAB1                        <---------AHL20(2)<---------YAB1                        <--------ATHB1    <---------ATHB12                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ATHB12   <<<<<<<<<ARR1                       <---------ATHB51   <<<<<<<<<ARR2                                         <----                  --------->ZAT6 <---------ICU4                                                ------     --------->YAB1    --------->ICU4--------->YAB1                                          <------- <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         xxxxxxxxxxxxxxxxx ----->GT1     <---------ATHB12 <---------ATHB12   --------->ATHB12              <---------AHL20(2) >DOF2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DAG2 xxxxxxxxx>smallRNA(se3)<---------ICU4  --------->WOX13(1)                       --------->AHL20(2) >DAG2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------TEIL         --------->ZAT6    <----------DOF2   tataaaatcataaaccaataacacaataatttaaatcattaacaatcatagattcatttgttttagttgaataacacaaaaattttaatgactttattaa  7355700                                                                         --------->TOE1(3)                                                                         --------->TOE2(3)                                                                      ------>MYB46(1)                                                                      ------>MYB83                                                                    <---------MYB46(2)                                                                    --------->AtMYB61                                                                    <---------MYB111(2)                                                                   --------->ANAC58                 -                                                                   --------->ANAC46           -------                                                                 --------->ZAT6               -------                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-     xxxxxxxxxxxxxxxx>smallRNA(si3)          <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <--    ------->TEIL                  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------- <---------YAB1                  --------->AHL20(2) --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----TOE2(3)      --------->ARR11(3)    <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---- ---->DOF2         <---------ARR11(3) <-----------GT1   <---------ARR11(3)   ---------->DOF2<-------- --YAB1      XXXXXXXXXXXXXXXXXXXX>MIR1888<---------DAG2 --------->GLK1(2)<----------DOF2  <---------AHL20(2) xxxxxx>smallRNA(si3)          <----------DOF2     <---------ATHB12--------->ANAC58      --------->AHL20(2)   agtatgaatctaataactcaagatttatgaagactttaaattactttttacaaatcaaaatctaataacaccaaactttaaaagagtcttataaaatctt  7355800  Previous    Next  AGI:  At3g20975.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.6e-08 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 7350583    to: 7355338    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g20978.1    Description:  other RNA Range:  from: 7353913    to: 7355345    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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