Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ANAC46                 --------->ANAC58                    --------->ARR14(2)                 --------->ANAC58         <---------ANAC58                 --------->AtLEC2         <---------ANAC58         <-----------------AGL1           <---------ANAC46         <---------------------WRI1        ------>MYB46(1)                   <---------LBD16   <---------ZAT6        --------->MYB52(1)         ------->GAMYB     <---------ARR14(2)        ------>MYB83             --------->ANAC58    --------->GLK1(2)      <---------MYB59            --------->ANAC58<---------HSFB2a(2)      --------->AtMYB61         --------->WOX13(1)  <---------GLK1(2)                            <--- ---REM1(1)  <-----------HVH21 <---------WRKY12  --------->HSFB2a(2)                           <-----   agccaagaccaaaccgttcaggcaaaacagaagtcaaccaagtttcgggctctagaatctgagtgttagggtgatacaaccatggggatttaagatgctt  7333800                                                                      --------->At4g35610                                                          --------->ANAC46                                                          --------->ZAT6                                                        <-----------GT1                           <--                                                 --------->AHL20(2)   <---------ZAT2              ---                                                 <---------AHL20(2)   --------->ZAT2             <---           --------->CCA1(2)              <------ZmHOX2a(2)           <---------At4g35610     ------- --------RAV1(2)         <---------YAB1  <---------ARR11(3)      ----------->HVH21            <------ ------HVH21 --------->DAG2      --------->YAB1--------->YAB1   <-----------HVH21--------->AHL20(2)   caggcgaagaaagataaggcaagtagtatcatttttcatactagatcaaatataaatttcacactatgtgacagctctgcaaaaaaaattcacatgtaca  7333900                                 ---------->DOF2                            <------NtERF2                                                  --------->ANAC58 -------ARR11(3)         ------>NtERF2                                      <---------ANAC58 ------>ARR11(3)       <---------RAP2.6(2)              <---------AHL20(2)  <---------ANAC58        - ------CCA1(2)      <---------GLK1(1)                  --------->AHL20(2)   <---------ANAC46    ----- >TEIL             --------->ARR11(3)                 <---------YAB1   --------->ALFIN1    --------->ANAC58 -TEIL             <---------ARR11(3)      <---------ZAT6       <-----------HVH21      <-----------GT1   tatctatatttgagtttacaagatttcggccgaatgaaaggcctactgatacaagtattatatagttgtcaccttggggcttgggcgattaacacgctta  7334000                                                                 <---------AHL20(2)                                                        ------>ZmHOX2a(2)                                                       <------ZmHOX2a(2)                                                      --------->ARR14(2)                                                      --------->AGP1                                                      <---------AGP1 <-----------GT1                                                      <---------ARR14(2)                                                      --------->ARR11(3)                            <                                                      <-----------ARR10--------->ANAC55(2)        ---                                     <-----------HVH21<---------ARR11(3)                         <---                                ----------->HVH21    <---------CCA1(2) <---------ANAC55(2)     ------       --------->AHL20(2)<---------AHL20(2)   <-----------GT1   --------->YAB1                <------  --------->AHL20(2) <---------AHL20(2)   --------->AHL20(1)   <---------YAB1                -------- ---------->GT1      --------->AHL20(2)   <---------AHL20(1) <---------ICU4             <---------ANAC55(2) ---->MYB52(1)      --------->AHL20(2)    --------->AHL20(2)--------->ICU4              --------->ANAC55(2)   acgagtaaataaactactactatttattttttcagtgactgtcatatattacttcagatctacttattatatcacgttttttaagagaaaacgtattata  7334100                                                                                    --------->WRKY45                                                                                    --------->WRKY38(1)                                                                                    --------->WRKY12                                                                                   <---------MYB52(1) ----------->GT1                                                           --------->YAB1 ---------TOE2(3)                                                          <---------ICU4 ------->DOF2                                                         <------NtERF2--------->DOF5.7(2) ------AHL20(2)                                                     *TSS  --------->ICU4<----------DOF2 ----->TBP                    ---------->DOF2                ------------>CBF     <-------GAMYB    <- ---AHL20(2)            <----------DOF2                     ----------->RAV1(1)<---------At5g28300--- ->AHL20(2)---------->DOF2  <---------YAB1               --------->ANAC46 <---------ATHB12        ---   taaaggtgataaacaaagtatggagtctttataaaagattactgcctcttcttcactatgagcaacaatggcagcaatgatcaccgttgactttcaaaac  7334200                                                               --------->MYB52(1)               <----------DOF2                                ---------->DOF2          ------>ZmHOX2a(2)        --------->YAB1                                     --------->ANAC58            ==============       <-------TEIL                                        --------->ANAC58          --------->ARR11(3) --------GLK1(2)                                         ---------->DOF2             <---------ARR11(3) ------>ZAT2 ------>ZmHOX2a(1)         <-----------GT1  <------ZmHOX2a(1)  <---------ZAT2 ------>At4g35610   ---------->ID1<----------DOF2    <---------LBD16       --------->ZAT2   ------>ZmHOX2a(1)   agcttcgcattcatcctcttttgtctcttctctctcctttgttactctctcttcttcaggaaagcaaagggctcacgagctggtcgtgatcttcctccga  7334300                         --------->At4g35610              <---------MYB52(1)             --------->LBD16 <-----------GT1                                        --------------->AtSPL8            --------->HSFB2a(2)                                        <-----------ARR10            <---------HSFB2a(2)                                        <---------ARR11(3)           <---------LBD16<---------ICU4                               --------->ARR11(3)       <----------DOF2<<<<<<<<<<WRKY26                       <----------DOF2 ------>ZmHOX2a(1)    ------>ZmHOX2a(1) <<<<<<<<<<WRKY38              <---------ZAT18   --------->CCA1(1)            -- ==========HOX2a_HOX2a<<<<<<<<<<WRKY43              --------->ZAT18   --------->RVE1(1) ------->TEIL   gccctccttcttttccggtaattggtcatcttcaccttcttctctctgttttagttcacaagtcttttcaaaaaatctcctccaagtatggacctcttct  7334400                                                            ------>ZmHOX2a(2)                                                            ===================================HOX2a_HOX2a                                                           ====================================HOX2a_HOX2a                                                           <------ZmHOX2a(2)                                                          --------->ARR14(3)                                                          <---------ARR11(3)                <-------MYC2                              --------->AGP1                <-------MYC3                              <---------ARR14(2)                ------->MYC3                              --------->ARR11(3)               --------->ANAC46                    <---------SPL7             <---------ALFIN1              <------NtERF2  <---------ARR14(3)        --------->HSFB2a(1)             ------>NtERF2     --------->ARR14(2)       ------->TEIL                  =============================HOX2a_HOX2a       <---------ARR11(1)            ------>ZmHOX2a(1)--------->ANAC55(2)       --------->ARR14(2)            ==============================HOX2a_HOX2a  ------->TEIL     --------->LBD16             <---------ALFIN1 <---------ANAC46        <---------ARR11(3)    --------->ANAC46          <---------ALFIN1    <---------ANAC58 <---------ZAT18             <-----   <---------LBD16           ------>ZmHOX2a(1)    <---------ANAC58 --------->PCF2       ------>ZmHOX2a(1) ---->ZmHOX2a(1)------->MYC2 =====================================HOX2a_HOX2a  <---------DOF5.7(2)  -   ccttctccgcatcttccacgttcccatagtcctcacctcctcggcctcagtggcttacgagatcttcagggcccaagatgtgaacgtctcctctcgcggt  7334500                                             <----------DOF2                                      <---------GLK1(2)                                     <---------At4g35610                                     <---------ZAT2                                <-----------GT1       --------->ALFIN1       --------->GLK1(1)                                                   ---   --------->ZAT14            --------->HSFB2a(1)                               <------ZmHOX2a(1) <--   <---------ZAT14            <---------GLK1(1)                          <---------AHL20(2)    ------ --------->ANAC46            <---------ARR14(2)                     --------->AHL20(2)     <--------- ------HVH21<------ZmHOX2a(1)<---------GLK1(2)                    <----------DOF2  --------->At4g35610 -------->MYB46(3)           --------->ARR14(2)                   --------->TOE2(3)<---------At4g35610   caccctccagtggaggagtctctctggttcggattttccagcttcttctttgctccctatggagattactttaaatttatgaggaagctcatagccacaa  7334600                                            --------->At4g35610                                         --------->ZAT14                                       --------->LBD16                                      <---------ANAC58                                      <---------ANAC58                                      <---------ANAC46                                   --------->ARR14(2)                                   --------->GLK1(2)                        ----------->HVH21                             --------->ANAC58                              <---------WOX13(1)                           <---------DOF5.7(2)        --------->ARR14(2)  <---------ANAC58             --------->ANAC58--------->ANAC58         <---------AGP1 <---------ARR14(2)  <---------ANAC46       --------->DOF5.7(2)<---------At4g35610      --------->ARR14(2) ------>HSFC1(2)       ------>ZmHOX2a(2)--------->AtLEC2            --------->GLK1(1)               - -------HSFC1(2)       <---------MYB46(3)<---------ZAT14------>ZmHOX2a(2) <---------AtLEC2     <----- ---->DOF2   --------->ANAC58--------->ANAC46    --------->At4g35610<---------GLK1(1)          ====== -ID1      <-----------RAV1(2)     <---------ARR14(2) <---------ARR14(2)  <---------ANAC58     ======   agcttcttggaccgcaggcactcgatcgttcacgaaaaatccgtgcagatgagctagatcggttttacagaaatctgcttgacaaggcgatgaagaagga  7334700  Previous    Next  AGI:  At3g20930.1    Description:  RNA recognition motif (RRM)-containing protein. similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64120.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 7331727    to: 7334035    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g20935.1    Description:  pseudogene, putative cytochrome P450, blastp match of 45% identity and 4.1e-82 P-value to GP|5081817|gb|AAD39549.1|AF156976_1|AF156976 flavone synthase II {Gerbera hybrida} Range:  from: 7334168    to: 7337960    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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