Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->AHL20(2)    <---------ICU4      <---------AHL20(2)        --------->ATHB12                    <-----------GT1     --------->AHL20(2)         --------->YAB1                  --------->ARR11(3)     <---------AHL20(2)         <--------HAHB4  <--------ATHB1  <---------ARR11(3) ------->ANAC55(2)     <---------TOE2(3)       --------->ICU4<---------AHL20(2)              <------- --------ANAC55(2)  <----------DOF2 <-----------GT1          --------->AHL20(2)              <------- ----->YAB1<---------AHL20(2)   --------->ATHB51--------->YAB1  <---------AHL20(1)        <---------- -----ATHB12     <---------YAB1--------->ICU4  <---------ATHB12 --------->AHL20(1)  <-------TEIL -->WOX13(1)   ----------->GT1 --------->AHL20(2)      <----------DOF2             <-----------GT1<--   cacataattttataaaattgtgatttatgttgaataattagccatttcaatgattttctttaaaaaaatatttctatttctctagttacattatacttta  7326000                                                                        --------->ANAC58                                                                        --------->ANAC58                              <-----------GT1                       --------->ANAC58  <---------ZAT14         <---------YAB1                            --------->AtLEC2                -  --------->ZAT14        <---------AHL20(1)                         --------->ANAC58                < <----------DOF2         <---------AHL20(2)                       --------->YAB1                   -- <---------DAG2      --------->YAB1                              <---------ATHB12          ---------- ---DOF2             <--------HAHB4                              --------->ICU4         ---------->DOF2 --DAG2             <---------YAB1                             --------->WOX13(1)  --------->At4g35610 -GT1    ------>NtERF2 <---------YAB1                       --------->ANAC58       <---------At4g35610 ---------GT1<---------ARR14(2)      <----------DOF2        --------->ANAC58  ---------->DOF2    ----   tcactttactctgcctatatgtattattatttttacaatctttttcatttcttcagtactactagcaatcatgcaagtactaaagagctgaaaagctaaa  7326100                <---------TOE2(3)              --------->AHL20(2)              <---------AHL20(2)           ------>MYB46(1) -------->AHL20(1) ---------AHL20(1) <---------ARR11(3)          --------->ANAC58                    --------------->AGL15 ------->AHL20(2)  --------->ARR11(3)---------->DOF2                            <-----------GT1  ---- ->GT1     ------>MYB83     ---------->DOF2    --------->ANAC58     --------->CCA1(2) <---------YAB1 ----->AHL20(2)---------->DOF2----------->GT1<--------P    <----------DOF2 <----------DOF2     <-----   aatatataaaaccaaattaaagatgttgaagaaagaaaaaaaagagggtaagctattgggcctttataagatagaagctttaatacccattataggccca  7326200                                                                               ------->PIF5                                                                               <-------MYC4                                                                               ------->MYC3                                                                               <-------PIF5                                                                               <-------PIF4                                                                               <-------MYC3                                                                               ------->MYC4                                                                    <-------MYC3                                                                    <-------PIF5                                                                    ------->MYC3                                                                    <-------MYC2                                                                    ------->MYC2                                                                    ------->PIF5--------->ALFIN1                                                                   --------->O2------->MYC2                                                                   <---------O2<-------MYC2                                                                   --------->TGA1a                                                                   <---------TGA1a                                                                   <---------ANAC46  --------->At4g35610                                                                   =====================bZIP_bZIP                                                                 <---------DOF5.7(2) <---------ZAT2                                                               <-----------HVH21----------->HVH21                                                               --------->DOF5.7(2)   ----------->GT1                                                             --------->DEAR3(1)------->PIF4                                                           ------>NtERF2      --------->O2                                                          <---------ATERF1(2) --------->ANAC55(2)                                                          --------->ATERF1(2) <---------bZIP60(2)                                                         <---------RAP2.6(2)  <---------TGA1a                                                         --------->ATERF1(1)  <---------ANAC55(2)    --------->AHL20(1)                     ---------->DOF2--------->DEAR3(1)  <---------O2    --------->AHL20(2)                     ==================================bZIP_DOF<---------At4g35610    <---------AHL20(2)         --------->ARR11(3)        --------->RAP2.3(1)  --------->TGA1a   --------->AHL20(2)     --------->AHL20(2) ----------->GT1<------NtERF2    ------------>OsbHLH66 --   <---------AHL20(2)     <---------AHL20(2)--------->DAG2------------------>SPL14   <------NtERF2 -- ------->GT1             --------->YAB1    =============================================bZIP_DOF ---- ------RAV1(2) <-------TEIL    <---------ARR11(3)   <-----------RAV1(1)    ---------------->PIF3(2)--   ggtaaattaattacacatacactcgaattttaatatctactaaaaaaaagttatatgttgccgccgttcacgtggacagcacgtggcagctaaaattcaa  7326300                                                            <---------AHL20(2)                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                           <---------AHL20(1)                                                        --------->YAB1                                                       <---------YAB1                                                       <---------AHL20(2)                  ----------                                                      <---------AHL20(1)                *TSS  <------                                                      --------->AHL20(1)      --------->ARR11(3)                                                      <---------AHL20(2)      <---------AHL20(1)   == ------->ANAC46              <------ZmHOX2a(2)        --------->AHL20(2)      --------->AHL20(1)   == ------->ANAC58         ------>NtERF2              --------->AHL20(2)         <---------ARR11(3)   <- ----->MYB52(1)        --------->DEAR3(1)        --------->AHL20(2)          <---------AHL20(2)    -- ------->ANAC58    --------->SPL7          ----------->RAV1(1)  ------------>CBF <---------AHL20(2)--   aacggaacaaaaaatacttcttacgacgacgatcaaatacaacaacaacaaaataatataataaaattcaattccataaatatttttttttttgttcttt  7326400                        <------ZmHOX2a(2)                       <---------ARR14(2)                       --------->ARR11(3)                       --------->ARR14(2)                       <---------ARR11(3)             --------->HSFC1(2)                                 <---------At5g28300             <---------HSFC1(2)                                --------->YAB1 ----------->HVH21 ------>ZmHOX2a(1)                          --------->MYB46(3) >ID1      --------->DAG2                                     <---------ATHB12 ----DOF2 ---------->DOF2------>ZmHOX2a(2)                  --------->WOX13(1) --------->LBD16 ===============================HOX2a_HOX2a       <---------ANAC58      <---------ALFIN1 ==============================HOX2a_HOX2a        <---------ANAC58   --------->REM1(2) --------At4g35610 --------------------->WRI1    --------->HSFC1(2)  <---------ZAT18 ------->At4g35610 =============HOX2a_HOX2a      <---------HSFC1(2)--------->LBD16                 -- ---->ZmHOX2a(1)  --------->TOE2(3)  ---------->DOF2     ------>ZmHOX2a(1) --------->DEAR3(1)  ------   cctctgactggaaaaagcttcctcagatcgtttcatcgtccaagcggaagaagcgtctccttcaatcaccgtggacacctccgagactgtctccgattga  7326500                                   ------->TEIL                              <---------AtLEC2                              <---------ANAC58                              <---------ANAC58                              <---------ANAC46                           <---------WOX13(1)                                             <---------AHL20(2)     --------->HSFB2a(2) --------->ATHB12              >>>>>>>ZML2    <---------ANAC58   <---------AHL20(2)     <---------HSFB2a(2) <---------ICU4         <----------DOF2       <---------ANAC58   --------->AHL20(2) --------->GT1          <---------YAB1         --------->TOE2(3)  ---------->ID1<---------CCA1(2)   - --->ATHB12           --------->YAB1        <---------CCA1(2)   <-----------RAV1(1)      <---------AHL20(1)   atggtatctcgaaatttcagtcatttatgattgcatgaacctgcttatacctttgttctagggtttttgttgtcttgttcccatctctcaattttttttt  7326600                                                               >>>>>>>>>ARR2                                                              --------->ATHB12                                                     <---------LBD16                          <------                                                   <---------ARR14(2)                         -------                                                   --------->ARR14(2)                     <---------LBD16                                                <---------ANAC58                         <---------ANAC46                                                <---------ANAC58                 <---------GLK1(1)                                                <---------ANAC55(2)   <---------ANAC58   <---------ANAC58                                                --------->ANAC55(2)   <---------ANAC58   <---------ANAC58                                               <---------TOE1(2)      <---------ANAC46------>ZmHOX2a(1)                         <---------DAG2        <---------TOE2(2)<---------WOX13(1)    <----------DOF2 --------->DOF2          <----------DOF2      <-----------GT1<---------YAB1      --------->GLK1(1)   ttcaaagttgcaaaattcaagtttcgactttttgttaattctgtcttcttacgtttctgggttttgattgtttcttgttactgaaatcctttcgtggagt  7326700                                  <-------GAMYB                     <---------AHL20(2)                     <---------YAB1<---------MYB52(1)                     --------->AHL20(1)                     --------->AHL20(2)    <-----------RAV1(1)                                      -        --------->ICU4           <-----------RAV1(1)                                             ---- ---ANAC46          --------->AHL20(2)   <---------ANAC46                                       <---- ---->GT1<---------ICU4       --------->GLK1(2)<---------MYB46(3)                        <---------REM1(1)   attaagagtcaaaattgctgaattttattgaaattctgttgttttgtgttggatgtttttggtcttgtttcgatagaattggattatgtagttgtagatt  7326800                                                           <---------ANAC46                                                   <<<<<<<<<<<<<<<<<LFY                                               <---------ARR11(3)                                               --------->ARR14(2)      <-------TEIL             --------->ARR14(2)                --------->GLK1(2)      <--------P             <---------GLK1(2)             --------->YAB1<---------MYB46(3)                         <       --------->RVE1(1)              <-------TEIL----------->HVH21<---------TOE2(3)           ------ -------->ZAT6   <---------YAB1      --------->ANAC58   <---------AtMYB61                 --------->ZAT14 ----->YAB1  <---------ARR14(2)      --------->AtLEC2   --------->ALFIN1                  <---------ZAT14 ---TEIL--------->MYB52(1)           --------->ANAC58  <---------------------WRI1  <-------TEIL<-----   catcactaaatatcggattttgaatagggaattgaagacatgcattcaaaatctgacagtggtgggaacaaggttgattcagaggttcatggtacagtat  7326900  Previous    Next  AGI:  At3g20910.1    Description:  CCAAT-binding transcription factor (CBF-B/NF-YA) family protein. Identical to Nuclear transcription factor Y subunit A-9 (NFYA9) [Arabidopsis Thaliana] (GB:Q945M9;GB:Q9LIH3); similar to HAP2A (EMBRYO DEFECTIVE 2220), transcription factor [Arabidopsis thaliana] (TAIR:AT5G12840.4); similar to HAP2A (EMBRYO DEFECTIVE 2220), transcription factor [Arabidopsis thaliana] (TAIR:AT5G12840.3); similar to HAP2A (EMBRYO DEFECTIVE 2220), transcription factor [Arabidopsis thaliana] (TAIR:AT5G12840.2); similar to CCAAT-binding factor B subunit homolog (GB:AAC49266.1); similar to CCAAT-binding factor:SUBUNIT=B (GB:2204247A); contains InterPro domain CCAAT-b Range:  from: 7326388    to: 7328582    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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