Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ARR11(3)                   --------->AHL20(1)                 <---------ARR11(3)                 --------->AHL20(1)                 --------->ARR11(3)                 <---------AHL20(1)              --------->AHL20(2)         >>>>>>>>>>E2Fd         ----------->GT1         >>>>>>>>>>E2Fe         >>>>>>>>>>E2Fa         >>>>>>>>>>E2Fc      --------->ZAT2      --------->At4g35610    <-----------RAV1(2)    ---------->CDC5<---------AHL20(1)           <------ZmHOX2a(1)        ----------->GT1 --DOF2 --------->LBD16       ---------->DOF2 --------->MYB59     --------->GLK1(1)                 -   ctaggcccagcgggaaaaaaatattttgacccaaaagttaacaaaaattaggactgtttttatgtgagatttcatttgttaattgagcatccattttgta  7275300                                                                   ----------->RAV1(1)         ------                                                               --------->YAB1                <-------                                                              <---------ATHB12               <-------                                                        --------->ANAC58                     <-------                 <---------CCA1(1)                      --------->ANAC58                    ---------                 <---------RVE1(1)                  <-----------HVH21                      -------->P                --------->ARR11(3)                ------->TEIL--------->MYB46(3)  --------->ICU4                <---------ARR11(3)       --------->AHL20(2)  ------>MYB83 --------->ZAT6  <----------        <-----------GT1                  <---------AHL20(2)  ------>MYB46(1)    --------->YAB1 ------ -------->ZAT18--------->YAB1           --------->AHL20(2)  --------->WOX13(1) <---------YAB1<-------   agtgctcaattaacaaatgatattttgacccaagttaacaaattaaaatgtgtatgtcacaccaatcaacaacataatactataattcttatctaccaaa  7275400    --------->TOE2(3)   <----------ID1 >MYB46(1) --MYB46(2) --MYB59 --MYB111(2)                   --------->ANAC46 >ANAC46              --------->YAB1                              <---------YAB1 -GT1          --------->ARR11(3)                               --------->YAB1             <---------TOE2(3) >MYB83   --------->YAB1 --------->AHL20(2)                    <---------YAB1              <---------TOE1(3) --MYB111(1)   <---------ARR11(3)--------->ANAC46     --------->TOE1(2)                    --------->MYB59   ctaaaaccacaaacatagattttagcataaaatacacaatacaaaataaaactaaacgtaggcatattataaaaccgattcagagcataaatttaggttt  7275500                                                                                                   <-                                                                                                   --                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               ------                                                                     ----------->GT1    ----------->GT1                                                          --------------->AGL15         <---------MYB46(3)                                                          ===========================================                             <---------AHL20(2)     --------->ARR11(3)                 <---------AtMYB61                    <---------YAB1                  <---------ARR11(3)                 --------->ALFIN1      ----------->GT1    <---------AHL20(2)  <---------YAB1        ---------->DOF2  <------ZmHOX2a(1)   attctatgttgaaaatagtattttgattttttttattctatgggtttatgaaaagatttatccaaaatagaaagaaataaacaagaggagtggttgaata  7275600                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                             --------->CCA1(1)                                                             --------->RVE1(1)  <-----------GT1  --------->MYB52(2)                 --------->ANAC58 --------------AtSPL8                                 --------->ANAC58                          <---- ------------->AtSPL8   ----------------->AGL3        ----------->GT1                    --------->AHL20(1) ---->AHL20(1)    <-------TEIL                       <-------TEIL          --------->YAB1<---------AHL20(1) -----AHL20(1) <---------HSFC1(2)                   --------->CCA1(2)      <---------ICU4<---------ARR11(3) ---->AHL20(2) --------->HSFC1(2)                   --------->ARR14(1)    <---------ATHB12  <-------- -----AHL20(2) <---------HSFB2a(1)                 --------->ARR14(2)     --------->ICU4 --------->ARR11(3) --->AHL20(2)  --------->HSFB2a(1)                 --------->ARR11(1)  ------>ZmHOX2a(1)--------->RVE1(1) =========================================MADS_MADS<---------ARR14(2)------>ZmHOX2a(2)  --------->CCA1(1)   aattgtactattttggagggttcgttttcaaaattagaaagaatacagttatagatacgaaaaatatctgatcctaatcatcacttcaaaatatctttct  7275700                                                                                           --------->LBD16                                                                                      ----------->HVH21                                                            <---------ALFIN1         --------->MYB46(3)                                                           --------->ANAC46      ----------->HVH21                                                         --------->ANAC46        <---------ETT(1)                                     --------->YAB1      <---------ALFIN1       --------->DEAR3(2)             ---------->ID1          <---------ICU4     --------->MYB46(3)      --------->MYB46(3)         <---------DAG2      <---------ALFIN1      --------->ARR11(3)       ----------->HVH21      --  <----------DOF2           --------->LBD16        <---------ARR11(3)       --------->ANAC46       -- ------DOF2 *TSS       <----------DOF2            --------->CCA1(1)     <-----------GT1 --------->MYB52(1) --DOF2  <----------DOF2   --------->ANAC46       --------->RVE1(1)  --------->ANAC46--------->DEAR3(2)   ttccctttccactttttcgcttacactttccccaactcatcatcactctaaaatatctcccaccacataccacttaacccgacccgacccgaccggaaaa  7275800                                 <---------ALFIN1                              --------->AtMYB61                              <---------ALFIN1                             <---------MYB55(2)                             --------->MYB46(3)                       <------ZmHOX2a(1)                      <---------At4g35610                 --------->TOE2(2)              <---------ARR14(2)                     >>>>>>>GRF7 --------->DEAR3(1)    ------->GAMYB  <---------ZAT2   --------->DEAR3(1)       =======================HOX2a_HOX2a             <---------MYB111(2)        ----------->HVH21       <------ZmHOX2a(2)    -------->P     --------->LBD16------->GAMYB   --------->DEAR3(1)      <---------ARR14(2) --------->At4g35610          --------->MYB46(3)  ----------->HVH21      --------->ARR14(2) <---------At4g35610     --------->AtMYB61    --------->ZAT2  <------NtERF2 --------->HVH21    <-----------RAV1(2)  <---------LBD16-------->P   <---------ALFIN1------>NtERF2 ------->ANAC46   <-----------HVH21     ------>ZmHOX2a(1)--------->MYB46(3)------>NtERF2 --------->ARR14(2)   cccgacccgatccatcccaatgtcaggagctaccaccgcttcctccggagaccacaacaacctccgtctcccaactccgacgcttgacgccgaatcgcaa  7275900                                                                                             <------NtERF2                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                            ------>NtERF2                                                                                           <---------ANAC46                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                         <---------RAP2.3(1)                                                                                         <---------ATERF1(1)                                                                                         <---------RAP2.6(1)                                                                                         ------>NtERF2                                                                                         <---------DEAR4(2)                                                                                         <---------RRTF1(1)                                                                                         <---------ORA47(2)                                                                                        <---------RRTF1(2)                                                                                        --------->ALFIN1                                                                                        <---------RAP2.3(2)                                                                                        <---------RAP2.3(3)                                                                                        <---------DEAR3(1)                                                                                        <---------RAP2.6(2)                                                                                       <------NtERF2                                                                                  --------->ALFIN1                                                                         ---------->DOF2<---------RRTF1(3)                                                                  <---------ATERF1(1)  --------->ATERF1(1)                                                                  <---------DEAR3(2)  <---------RAP2.3(1)                                                                  --------->At4g35610 <---------ATERF1(1)                                                                  <---------At4g35610--------->ALFIN1                                                                 <---------DEAR3(1) <------NtERF2                                                                <---------ANAC46  <---------ANAC46                                                               <------NtERF2     <---------LBD16                                                              <---------MYB46(3) ------>NtERF2                                                              ------>NtERF2      --------->ATERF1(1)                                                         <---------At4g35610     <------NtERF2 ------                                                         --------->At4g35610    <---------ATERF1(1)                                                     <-----------HVH21  --------->AtMYB61<---------ERF1                                                   <------NtERF2<---------ORA47(1)<---------DEAR3(1)             <---------GLK1(1)                   <---------DREB2C(2)--------->WRKY12--------->ATERF1(1)         <---------ATHB12    --------->ARR14(2)  <---------ANAC46<---------MYB46(3)<---------ATERF1(1)  <---------ZAT2  --------->At4g35610       <---------AtLEC2 ----------->HVH21  --------->DEAR3(1)---  <---------At4g35610        <---------ARR14(2)  <---------DEAR3(1) ----------->HVH21<---------DEAR3(1)  --------->At4g35610       <-------GAMYB --------->ANAC58   --------->ALFIN1  <---------DEAR3(1) <--  --------->ZAT2  <---------At4g35610     --------->ANAC58 <---------MYB46(3) <---------LBD16-------- <-----------RAV1(1)----------->HVH21 <---------YAB1--------->ALFIN1--------->WRKY38(1)<---------ABI4(1)   actctgctgcaatcgatttctgctgaagggggttacgcttatgctcgcatggcggtgttagcggtggccggtgaccaaagcgcggcggaggcggcgcgtg  7276000                                                       <---------DEAR3(1)   <---------ANAC58                                    <------NtERF2   <---------ANAC46                                    ----------->HVH21              --------->At4g35610   <---------ANAC58                                   ------>NtERF2                  ------->TEIL --ANAC58                                            <---------ANAC58             --------->ANAC46 --ANAC55(2)                           <---------ARR14(2)                         <---------O2 --ANAC58                              <-----------ARR10                          --------->O2 ->ANAC55(2)                --------->LBD16          <---------ANAC58           <---------ALFIN1 --ANAC46                  <---------ANAC58         <<<<<<<<<E2Fc              <---------REM1(2) ----->HVH21               <---------ANAC58         <<<<<<<<<E2Fd           ---------->ARF1 ------>CCA1(2)            <---------ANAC46     <---------MYB52(1)      <---------ANAC58 -------bZIP60(2)         <---------DEAR3(1) --------->LBD16            <---------ANAC58 --->GT1        --------->ZAT14        --------->ARR14(2)               <---------ANAC46   atatggcttgggagcaacttcactctggtccgtggcactcggttctccccgtttggcgcgacgcttactcaatggcttgtctccacgtagctaaaatcca  7276100                <------MYB46(1)                <---------ANAC46               --------->MYB111(2)               --------->MYB46(2)        --------->ATERF1(1)        <------NtERF2       ------>NtERF2       <---------ATERF1(1)       --------->LBD16      --------->ATERF1(2)      --------->RAP2.3(2)      <---------DEAR3(1)      --------->DEAR3(1)      <---------ATERF1(2)     --------->RAP2.6(1)     --------->DEAR4(2)     <---------LBD16     --------->RAP2.3(1)     --------->ERF1     <------NtERF2     --------->ORA47(2)     --------->ATERF1(1)                                                            --------->ICU4    <---------ATERF1(1)                                                        ------>ZmHOX2a(2)    ------>NtERF2                                                              ======================    --------->ABI4(1)                                                         <------ZmHOX2a(2)    <---------RAP2.3(1)                                                       =======================   <---------DEAR3(1)                                                        <---------ARR11(3)   --------->RAP2.3(2)                                                       <---------ARR14(2)   --------->DEAR3(1)                                                        --------->ARR14(3)   --------->RAP2.3(3)                                                       <---------ARR14(3)   --------->ATERF1(2)                                                       --------->ARR14(2)   <---------ATERF1(2)             <----------DOF2                           --------->ARR11(3)    <-  --------->ATERF1(1)          <---------ZAT18                               <-----------ARR10     <-  --------->DEAR4(2)           --------->ZAT18            <------MYB46(1) --------->ANAC58     ======  --------->ERF1<------MYB83<------MYB46(1)         --------->TOE1(2)     --------->ANAC58     <-----  --------->RAP2.3(1)       <------MYB83           --------->YAB1      --------->LBD16      <--------  --------->ORA47(2)       <---------MYB46(3)     <---------YAB1     <---------LBD16<---------YAB1<-- <---------RAP2.3(1)     <-------GAMYB --------->CCA1(2)  <------MYB83--------->ANAC46<---------GLK1(2)   tttcgccgccggcgagtttggtgaggcgcttggtgcgcttgatatgggtcttatcatgggaggtatgcttctccgcaaggatcttcatgattctgttttg  7276200  Previous    Next  AGI:  At3g20810.1    Description:  transcription factor jumonji (jmjC) domain-containing protein. similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21956.1); contains InterPro domain Cupin 4 (InterPro:IPR013109); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 7275712    to: 7278385    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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