Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             <------ZmHOX2a(2)                                                                                            ---------        <---------GLK1(1)                                                                   <--------        --------->GLK1(1)                                                                   ---------        --------->ZAT2                                         ----------->GT1              <--------        <---------ZAT2   --------->ZAT14                     --------->ZAT14                ---------        <---------At4g35610                                  <---------ZAT14               --------->GLK1(1)        --------->At4g35610   --------->GLK1(2)            --------->ZAT6                 -----------      <---------ZAT18    --------->At4g35610       <---------ARR11(3)--------->DAG2   <---------At4g35610  <-----------RAV1(2)    <---------ZAT14         --------->ANAC58   ---------->DOF2   --------->At4g35610 -------->TOE2(3)        <---------At4g35610     --------->ANAC58<---------ZAT6 <---------LBD16   aacctcagggagctctgaaatagactctgcagaatcaagagcattttcaacaagctctctaactgtagtataaagcgacttccctggctgatgagatcca  7268200         <---------ANAC58         <---------ANAC46 ->CCA1(2) >ARR11(3) -ARR14(2)                                                           <---------ZAT18 >AGP1   <---------ANAC58                                   ------>MYB46(1)              --------->ANAC58 -ARR11(3)                                                  ------>MYB83                 --------->ANAC58 >ARR14(2)   ----------->HVH21           ------->TEIL      ----------->RAV1(1)       <---------ARR14(2) >ARR10 <-------TEIL    ----------->GT1<-------TEIL      --------->MYB46(3)          --------->ARR14(2)   caattcaaaattcgtgtgatacagaattgaaattacaaagatgcatcgtttgaattgaaaccaacaaattggggactcacattatcaaatccagcaatgt  7268300                    ----------->RAV1(2)                    --------->ZAT2       --------->ANAC58                    --------->At4g35610  --------->ANAC58                    <---------ZAT2  --------->ARR14(2)                    <---------At4g35610  --------->ANAC46                  <-----------RAV1(2)  <-----------GT1         --------->ANAC46           <---------ARR14(2)        --------->LBD16     <---------ARR14(2)        ------>NtERF2       --------->ARR14(2)                                                  <----        --------->HSFB2a(2) --------->GLK1(2)                                        <---------ATHB12        <---------HSFB2a(2)--------->ARR14(2)                      <---------At4g35610         ------       --------->ANAC46    <---------GLK1(2)             ----------->GT1  --------->TOE2(3)  <-------      <---------LBD16      <---------ARR14(2)      ---------->DOF2 --------->At4g35610       --------   tcttgttctccgcgaaaaactcagctggagattctgcaaattcacgaattcaaaaaagagagtcaattgagcttaatctcaattgaaatcaattgtgcag  7268400                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                             <---------ANAC58                                                  ------     <-------TEIL            <---------ANAC58         --------->ARR11(3)                       ------ <---------ATHB12           <---------At4g35610       <---------ARR11(3)                      <------ -----At4g35610        <---------ANAC58         ------>ZmHOX2a(1)                             ------- ----->RAV1(1)         <---------ANAC46         --------------------->WRI1              <---------ICU4 --ZAT18               <---------ANAC58   <---------ANAC58    --------->ZAT2            --------->YAB1 ->ZAT18           <----------DOF2        <---------ANAC58    <---------At4g35610      <---------ATHB12   caaatgatacatagagcattactttgcttgagcttgctctcgttgctgtccttagagttcttcgagcttcccttcttcgtttcaactaaatcatcacccg  7268500                                                                                                -----                                                                                                =====                                                                                               ======                                                                                               <----- ---->LBD16                                                                                   <------ ->NtERF2                                                                                     <------ --->ANAC58                                 ------>MYB46(1)                                   ------- --->ANAC58                                 ------>MYB83                                      <------ --->RAP2.6(2)                          >>>>>>>>>>MYB80                                       <------ --->ANAC46                         <------ZmHOX2a(2)                         --------->YAB1  ------- ->GAMYB  ----------->RAV1(1)     --------->At4g35610                         *TSS    ---------->DOF2 ---MYB55(2)                  <-----------HVH21                              <---------ATHB12 ------- -->MYB46(3)     ----------->GT1  <---------At4g35610        --------->ZAT6--------->WOX13(1)<------ZmHOX2a(1)   ccattgaaacaacaacaaattgtgaaaatttgagtcagatcaaaccaaatgtctcagagtacaacactacaagtttccaatcaaaattcaaagcaggatc  7268600                                               <---------ANAC46                                               <---------ANAC58                                               <---------ANAC58                                              --------->ZAT2                                              <---------ZAT2   <----------DOF2                           <---------MYB46(3) ->ZmHOX2a(2)                                --------->MYB111(2) ============================HOX2a_HOX2a    <--------P ============================HOX2a_HOX2a   <---------ANAC58 -ZmHOX2a(2)                               <---------ANAC58 ---AGP1  <---------ANAC46                <------MYB83 -----ARR10                      ---------->DOF2 -->ARR11(3)                   <------ZmHOX2a(2)    <-------GAMYB                <---------ANAC58 ---ARR14(2)          <------ZmHOX2a(1)   <------MYB46(1)                        <---------ANAC46 ---ARR11(3)          ================HOX2a_HOX2a  ----------->GT1               <---------ANAC58 -->ARR14(2)        <---------TOE2(3)     <---------MYB46(3)                --------->YAB1          < -->GLK1(2)         <---------TOE1(3)  <------------CBF             <-----------GT1      <-----------   tagggttttatggagggaagttaaggaaactcgatcaaagagattggttgctggggttatatcggtcattttactaaattatagcgtttgcgattggact  7268700                             --------->ANAC46                           ---------->DOF2                         <---------------AGL15                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58                 <---------ANAC46                 <---------ANAC58                 <---------ANAC58                                   ------>ZmHOX2a(2)                --------->ALFIN1                                   <------ZmHOX2a(2)            -----                <---------AtMYB61  ----------->RAV1(1)            --------->ARR14(2)            <----              <---------ANAC46     ------------>AtMYB77    <---------YAB1                      ------ ---------ZAT6<---------ANAC58   --------->At4g35610      *TSS    <---------ARR14(2)         -------- -CBF         <---------ANAC58--------->At4g35610      <---------GLK1(2)                 --------->ANAC46   tagtgtttcatgagttgtgtggtgtgactataagcagcaacagttgtaagttaacttgattctgtttggatccaatagagaaaaccattacacgagaaag  7268800                                                   ------>ZmHOX2a(2)                             ----                                                  <------ZmHOX2a(2)                            ------                                                  <---------HSFC1(2)                           <-----                                                  <---------HSFB2a(1)                    --------->GLK1(1)                                                  --------->HSFB2a(1)                    <---------GLK1(1)                                                 --------->ARR14(2)                      <------ZmHOX2a(2)                                                 <---------ARR11(3)                     <---------ARR11(3)                                                 <---------ARR14(2)                     --------->ARR14(2)                                                 --------->ARR11(3)                     --------->ARR11(3)                                           <---------At4g35610                          <---------ARR14(3)                                           --------->At4g35610                          --------->ARR14(3)                                           <---------ZAT2                               <---------ARR14(2)      ----------->GT1       <---------GLK1(1)  ----------->ARR10                       --------->GLK1(1) --------->AHL20(2)    <---------LBD16     --------->ZAT2                             ----------->ARR10 ------>GT1           ----------->RAV1(2) <---------ARR14(2)                      --------->At4g35610 ------ID1     ------>ZmHOX2a(1)       --------->ANAC46                           <---------At4g35610 ----->GT1 <---------ARR14(2)         <---------LBD16                             --------->ZAT2<---- -->DOF2   --------->ARR14(2)   ----------------->AGL1 --------->TOE2(3)   --------->LBD16------>ZmHOX2a(2)   gaaaaaaatggtgaatccttcttcacctggaattgccatactcggagctgggatcttcgtcaaaactcaatacattccgagattagctgagatctccgat  7268900         =================================bZIP_DOF         ---------->DOF2          ----------->HVH21       ----------->HVH21        <---------At4g35610  <---------ETT(2)              --------->At4g35610  --------->ETT(2)              <---------TGA1a  --------->DEAR3(1)            =================================bZIP_DOF  --------->WRKY38(1)          <---------TOE2(3)  --------->WRKY12         --------->SPL7 -->ZmHOX2a(2)           <---------RAP2.6(3)          <----------DOF2 --->ARR14(2)            <---------SPL7           <---------ZAT18 ----ARR14(2)          <------NtERF2         <------ZmHOX2a(2)      <---------ARR11(3) --ZmHOX2a(2)          <-----------------------TaNAC69(2)           --------->ARR11(3)   ---------->DOF2   ctcgtcgacctgaaagcgatttggagccgtactgaggtgacatttcgatcaatgcgcttgatttttgggagatgtttatgccaaatgtctaaaaagatga  7269000                                                   <---------ANAC46                                                 --------->ZAT2                                     --------->At4g35610                                    <---------ARR14(2)                         <---------TOE1(3)       <---------At4g35610                         <---------TOE2(3)       --------->At4g35610          ------>ZmHOX2a(1)                         <---------AtMYB61       <---------ZAT2               --------->LBD16                         <---------YAB1    ---------->DOF2        ---------->DOF2     <---------ANAC46             <---------YAB1         --------->GLK1(2)           --------->ANAC58    --------->ZAT14 <           ----------->GT1          --------->ARR14(2)          --------->ANAC58    <---------ZAT14 - <----------DOF2<---------YAB1     <---------GLK1(2) --------->ALFIN1       <---------LBD16<XXXXXXXXX   aaactttggcgaattgtgatttttgttatggttgaaggaatctgcaaaaggagctgtggagatagcaagaaagcattttcctgaagtgaagtgcaaatgg  7269100  Previous    Next  AGI:  At3g20780.1    Description:  ATTOP6B (BRASSINOSTEROID INSENSITIVE 3, ROOT HAIRLESS 3). similar to putative topoisomerase VI subunit B [Oryza sativa (indica cultivar-group)] (GB:CAE47077.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21964.1); similar to topoisomerase 6 subunit B-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ75096.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain DNA topoisomerase VI, subunit B, transducer; (InterPro:IPR015320) Range:  from: 7263906    to: 7268578    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g20790.1    Description:  oxidoreductase family protein. similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96297.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 7268758    to: 7271293    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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