Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <-------------                                                                                    --------->GLK1(1)                                                                                   --------->ARR14(2)                                                                          <----------DOF2                                                                         ------>ZmHOX2a(2)                                                                        <---------RVE1(1)                                                                        <------ZmHOX2a(2)                                                                       --------->ARR14(3)                                                                       <---------ARR14(3)                       --------->TOE1(3)                               --------->ARR11(3)         ---           --------->YAB1                                              <---------ARR11(3)         <--        --------->WOX13(1)                                             <---------ARR14(2)       -----      <---------ATHB12 --------->TOE2(3)                               --------->AGP1  -------------- <-----------GT1       <---------MYB59         ----------->GT1         --------->ARR14(2)       ----- ------TOE2(3)   --------->YAB1    --------->LBD16            ---------->DOF2<-----------GT1 --------   atgttacaatcaatctgaatcaaaacctaaacagacccagaattgaaaacagtgatttcgaattgaaagtcgagatcttttacccgatttccaccagcgg  7252100                                                                                <-----------HVH21 ----AGL1                                                                       <-----------TGA1 ------>MYB52(1)                                                    ------>ZmHOX2a(1) -------DOF5.7(2)                       --------->MYB52(1)          --------->LBD16   --------------- ---->At5g28300           <---------TOE2(3)               <---------ANAC58     --------->ANAC46 --->AGL1                 --------->ANAC58          <---------TOE2(3)  --------->ARR14(2)<-----------GT1 ---->DOF5.7(2)           --------->ANAC58 ------->GAMYB  <---------ANAC58 ------>ZmHOX2a(1)      <-- ->At4g35610   --------->CCA1(2)        ----------->RAV1(1)       ----------->RAV1(2)<----------DOF2   taacgaagacatcgaagaaacgagcatcaaggaagttgaaaacaacagcatacaaaggtttcttcccttcctgaatcctattcgtcactttgtacgattt  7252200                     ------>MYB83             <---------ARR11(3)                     ------>MYB46(1)          --------->ARR11(3)                                    -                   <---------MYB59       <---------TOE2(3)                                     ------ >AtSPL8          --------->ANAC46       <---------TOE1(3)           <---------ARR11(3)       ------- -------YAB1 ---------->DOF2         <---------HSFB2a(2)            <---------GLK1(1)         <------   cttattcgatggagtcaaagacccaactattgactcgttccctaaggttatcttcgacattcgatattcgaaatctctctctctgtctgactctcgcaca  7252300                                                                               <---------YAB1                                                                              <---------AHL20(2) <---                                                                             --------->YAB1      ----                              --------->MYB46(3)                            <---------YAB1     ------        --------->ZAT18    --------->REM1(1)                           ----------->GT1      ---------      --------->ZAT2  --------->ANAC46                                <---------TOE1(2)     ------->GAMYB      <---------At4g35610  --------->MYB46(3)                         <---------TOE2(2)    <---------      --------->At4g35610----------->RAV1(1)                       <-----------GT1        <---------At5g28300 ---------------------->TaNAC69(2)                                <-------TEIL--------->AHL20(2) <--- --->ZAT6             --------->ANAC58                          --------->ARR14(2)    <---------ZAT6 -->ZAT18             --------->AtLEC2                          <---------GLK1(2)   <---------At5g28300 ---ZAT18             --------->ANAC58    ----------->GT1       <---------ARR14(2) <-----------GT1   ctaatctaagctcacaagtctctcatgcaacaacaactggtgttttgtaattttcgattagacacagattcacaggttattaaaattactgtaaccgtag  7252400                                         --------->ANAC58         --------->ANAC58                --------->ANAC46         --------->ANAC58                --------->ANAC58       --------->MYB52(1)               ------->GAMYB    --------->bZIP60(1)               --------->ZAT14                 --------->ANAC58        <------  <-----------GT1                   --------->ANAC46      *TSS        ----------->GT1        -------- ------ARR11(3)                ----------->HVH21       --------->HSFB2a(2)            <---------TOE1(3) ----->ARR11(3)               <---------MYB59  ------->GAMYB --------->AHL20(2)      <-----------GT1 ----->ARR10                 ----------->RAV1(2)       <---------HSFB2a(2)           <---------DOF5.7(2) >TOE2(3)--------->ANAC46    --------->At4g35610    <----------DOF2   --------->ANAC58<---------TOE2(3) ---AtMYB77                  <---------At4g35610   <---------DAG2 ----------->GT1   <-----------GT1 < ------GLK1(2)   <----------DOF2 <<<<<<<GRF7  <---------MYB52(2) <---------------AtSPL8      <-------   attttgacctcacgacaaacttttattttggacctgacacaacacacaactcaccttttagaaaaaaatggtaagaaaaatcaaatttaacgttttttaa  7252500                                             <---------WOX13(1)                                            <------------CBF                                           --------->ATHB12                                          <---------YAB1                                        <----------DOF2                                  <---------ARR11(3)                                  --------->AHL20(1)                                  <---------AHL20(1)          <---------AHL20(2)      <---------AHL20(2)          --------->AHL20(2) --------->AHL20(2)                           <----------DOF2 ---AHL20(2)  --------->ANAC46    --------->ARR11(3)             <---------MYB59 ->AHL20(2)  <---------TOE2(3)    --------->AHL20(2)            --------->ANAC55(2)             <---- ------ZmHOX2a(1)  <---------YAB1--------->AHL20(2)           <-----------GT1 <----------DOF2  ------ --AHL20(2) <-----------GT1  <---------AHL20(2)       <------ZmHOX2a(2) ---------->ID1 ---------->DOF2   taggacttagaattaaacgttacgatgaaaaataaatatattctttgattgatacgatcgaagtttacctatttgtctttcttttttttcaaaggaatat  7252600                                   --------->AHL20(2)                                --------->AHL20(2)                                <---------AHL20(2)                                --------->ATHB51                                <---------ICU4                               <---------YAB1                               --------->ICU4                             <---------ICU4                                        <---------------AGL15                     ---------->DOF2<---------AHL20(2)    <-----------GT1          --------------->AGL15                   --------->HSFB2a(2)                --------->ATHB12            <-----------------AGL2                   =================================================================================MADS_MADS        <---------WOX13(1)  --------->ICU4           <---------AHL20(2)           ----------------->AGL2      --------->ATHB12    ----------->GT1            <---------YAB1   <---------YAB1      -----------     <---------YAB1--------------->AGL15       --------->TOE2(3) --------->YAB1   ----------------->AGL3 -----YAB1         <---------------AGL15 --------->ANAC55(2)     <---------ICU4   <-----------------AGL3 --->AHL20(2)      <---------HSFB2a(2)   <---------ANAC55(2)    <---------ATHB12<-----------GT1     -   tatagatttgattgaaattttctgaaagtagtaattatttaatatgtaatcttatattattgaccattcattactattagttttactaaaaatggttaaa  7252700                                                                                                    -                                                                                                    -                           <---------ANAC55(2)                                            <----------DOF2               --------->AHL20(2)                                                      --------->ICU4    <---------TOE1(3)      --------->ANAC55(2)                                      <---------AHL20(2)    <---------TOE2(3)    <-----------GT1                     --------->AHL20(2)   --------->ANAC55(2) >GT1          <---------AHL20(2)                         --------->WOX13(1)   <---------AHL20(2)   - -------->CCA1(2)   ----------->GT1            --------->TOE2(3)  <-------TEIL--------->AHL20(2)  <--   tgatataaggtttggatttaaatggtatcacgtttttatgttttgaaaacattattttgtcaattacatacatttctcaattttatgtaattcttttctt  7252800                         <----------DOF2                         <---------DAG2           --------->ANAC55(2)         <-----------GT1<---------DAG2 -------->ANAC58     <-----------GT1                               --------->SPL7          <--------- -------->ANAC58  --------------->AtSPL8              --------->REM1(1)                   <---------ZAT14 -------->ANAC46 <---------AHL20(2)        --------->ANAC58    --------->ZAT6  <-----------GT1 -------ALFIN1   --------->AHL20(2)        --------->ANAC58  ----------->RAV1(1)          --------->ZAT14   ccacccaaattttacatatttttttacctttttctcaaatttgatactcaatagctacaattccaacagtaccacatattttttccatcaagtttactgt  7252900                                  --------->LBD16                              --------->DEAR3(1)                                                  <--                    <---------HSFB2a(2)                                                           <--   --------->ICU4   --------->HSFB2a(2)                ----------------------->TaNAC69(2)    --------   --------->ARR14(2)      --------->REM1(1)    --------->YAB1               --------->HSFB2a(2)  <--   <---------ARR14(2)     <---------ZAT14--------->AHL20(2)         --------->ANAC46         <------- --GT1    <------ZmHOX2a(2)<---------ALFIN1    <---------YAB1----------->GT1 <---------HSFB2a(2)<----   atgcaaatatggatcatttcttctggactacacctccgagagtttatatatcatagtatccatgggtaatacgatacttatggaaagttttataagattt  7253000  Previous    Next  AGI:  At3g20740.1    Description:  FIE (FERTILIZATION-INDEPENDENT ENDOSPERM 1); nucleotide binding / transcription factor. Identical to Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM (FIE) [Arabidopsis Thaliana] (GB:Q9LT47;GB:Q9XF44); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.2); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to fertilization independent endosperm development protein [Eucalyptus grandis] (GB:AAN85568.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YV Range:  from: 7248815    to: 7252458    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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