Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->ANAC58                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                               --------->At4g35610                                                                        <---------ARR14(2)                                                                        --------->GLK1(2)                                                                        --------->ARR14(2)      -----                                                                        <-----------ARR10     -------                                            --------->AGP1              <---------ARR11(3) ------>NtERF2 --------ANAC58                            --------->At4g35610         <---------GLK1(2)  --------->DEAR3(1) --------ANAC58                            <---------At4g35610      --------->YAB1     --------->ANAC55(1) --GT1         --------->TOE2(3)     <---------ZAT6       ------>ZmHOX2a(2)    <---------At4g35610   ttcgtccatcgaagaagcctcaatggagttagaggccaagtgttcagctctagtgtctgatctcaacgattcagaatcttcagcaaaacacgccaacgag  7246700      --------->ARR14(2)      <---------ARR14(2)      <---------GLK1(2)    <----------DOF2        <---------CCA1(2)                        --------->At4g35610 --------->ANAC58<---------ANAC58             --------->ANAC58                             <---------ZAT2 --------->ANAC58<---------ANAC58             --------->ANAC58                             <---------At4g35610 ---->At4g35610--------->ARR11(3)            ------->TEIL                       ---------->DOF2    <- >GAMYB        <---------ARR11(3)       <-----------GT1                  --------->YAB1    <------NtERF2   ctcaagcagaaactcgagagcttgcagagcttaatggctaaattacgaacccaaatctaaaatttatactcccaataagaagtgaagcagggcagctaat  7246800                                                <---------AHL20(2)                                         <------NtERF2                                        --------->LBD16                                        <---------MYB46(3)                                        ------>NtERF2                                       --------->ALFIN1                                       <---------DEAR3(1)                                       <---------ANAC46            <---------AHL20(2)                                      <---------LBD16          <-----------TBP                                      <------NtERF2--------------->AtSPL8                                      --------->ATERF1(1)    --------->AHL20(2)                                     <---------DEAR4(2)      ----------->TBP                <---------ARR14(2)   <---------RAP2.3(1)   <----------DOF2                 ------->TEIL    ----------->GT1                 <---------DEAR3(1)     ------>ZmHOX2a(1)          <---------ANAC46   <---------TOE2(3)                <---------RAP2.3(2)   --------->TOE2(3)      ------->TEIL ---------DOF2 <-----------TBP     --------->At4g35610<---------CCA1(2)    <---------ARR14(2)   tctttgatgtaaatagcatatatagagaaatgtgagaagcggcggggaatttttttgtatcctttatatataatgtggaaacgaatttttgtgtatgtct  7246900                                     --------->DAG2                                    ---------->DOF2                --------------->AtSPL8               <---------ANAC58 --------------->AGL15               --------->HSFC1(1)               <---------ANAC46 <---------------AGL15               --------->HSFB2a(2)               <---------ANAC58--------->ANAC58                     <---------HSFB2a(2)             --------->ICU4    --------->ANAC58 <----------DOF2     <---------HSFC1(1)         ------------>CBF      <-----------------AGL1              <---------ANAC46      <---------YAB1           <-----------------AG       --------->YAB1            --------->DAG2  <    --------->CCA1(2)          ----------------->AGL2    <-------TEIL              ---------->DOF2 <-   catgagttatgagcaatgcttgtacttgctatcacccaaaaaggaactgtctttttggattcataagtttcgagaaatttttgcaaaaagctatgttttt  7247000                                                                                         <-----------                                                                                       --------->ARR14(2)                                                                                       --------->ARR11(3)                                                                                       <---------ARR14(2)                                                                                  <------MYB83 <XXXXX                                                                                  <---------MYB46(3)                                                                                  <------MYB46(1)                                                                                 --------->MYB111(1)             <--------P                         <-----------RAV1(2)              --------->MYB55(2)             <---------WOX13(1)              --------->At4g35610                 <---------AtMYB61           --------->ATHB12            <-----------TBP                           <---------MYB46(3)          <---------YAB1             <---------DAG2                              --------->MYB111(2) <---------ANAC58                    <----------DOF2                            <---------MYB52(1) <---------ANAC58                <------ZmHOX2a(2)           <---------ARR14(2)<---------At4g35610 ---------TOE2(3)         ---------->DOF2    <---------At4g35610     ------------>CBF<---------MYB46(3) ----------GT1      <---------YAB1------>ZmHOX2a(2)          --------->ARR14(2)<-------GAMYB  <XXXXXX   tttacgttcttcatggttgatttcgattaaaagagatcgctttttgtagctcaggtctcatcaaatctgaatccaattttcagttggtggatattggatg  7247100                                                                 <---------MYB111(1)          <---------ANAC46                                      <---------ZAT2          <---------HSFB2a(2)                    --------->ARR11(3)  --------->AtMYB61         <---------LBD16                         <---------ARR11(3)-------->P    <--------P                               ---------->DOF2    --------->At4g35610   <-------GAMYB                          --------->TOE1(3)     <---------At4g35610  <---------MYB46(3) --------->ICU4       --------->TOE2(3)     --------->ZAT2 -CBF<---------MYB46(3)                 ------->TEIL  <---------AHL20(2)       --------->ANAC58 XXXXXXXXXXXXXXXMIR167A/B           --------------->AtSPL8     ------->TEIL    --------->ANAC58   --- XXXXXXXXXXXXXXXMIR167D            <----------DOF2    --------->AHL20(2)  <----------ID1  <---------YAB1   atgctggttgtttcggaaaactacttattaagcccttctttgtaccttaaagctcttaaattatgcagctaccaaaacgtcaagaaacaactattgttga  7247200                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                           --------->At4g35610                --------------->AtSPL8           ------                       <---------ARR14(2)                     <---------------AtSPL8           <-----      --------->GLK1(1)--------->ARR14(2)                <---------WOX13(1)                   -------      <---------ARR14(2)   <---------At4g35610        <---------YAB1                       --------->AtLEC2 --->ZmHOX2a(2)<---------YAB1                  <------ZmHOX2a(1)                  ----------->GT1   tccatgggaattcgattacaaatgggttctgctccaatctccagttgaaggacatgttgatagatttgtacttaaaacagggagatgtgaaacatgcacg  7247300                                                                                 --------->LBD16                                                                                 ----------->HVH21                                                                                 <---------SPL7                                                 <---------ARR11(3)            <---------LBD16 --->ANAC58                                      --------->ARR11(3)      <---------GLK1(1) --->ANAC58                                     --------->YAB1 --------->HSFB2a(2) --->ANAC46                                --------->At4g35610 <---------------AGL15 --->ANAC55(2)                             <---------At4g35610 <---------HSFB2a(2) --------->SPL7 --->ANAC55(1)                     <---------ANAC58            --------------->AGL15 ----ANAC55(2)                     <---------ANAC58           <-----------------AGL1     <---------MYB46(3) >TEIL      <---------GLK1(2)      <---------ANAC46------>ZmHOX2a(2)     --------->GLK1(1)          -   taaactgttcgatagaatttctaagagagatgtggtttcttggacagctatgatctcgaggttttctcgatgtggatatcacccggacgcgttgttgttg  7247400                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                            <---------ANAC46                                                                       --------->CCA1(2)                   <---------ARR11(3)                                 --------->ARR11(3)             --------->LBD16         <---------ZAT14                  --------->ARR11(1)            <---------LBD16          <---------ZAT18                  <---------ARR14(2)           <---------LBD16         --------->At4g35610                --------->ARR14(2)          ------->TEIL           <---------ICU4                     --------->ICU4        <---------ABI4(2)       <---------ATHB12                    ----------->ARR10        <-------TEIL     <---------TOE2(3)                   <---------ANAC46                       -     --------->CCA1(2)   <---------TOE1(3)                   <---------ANAC58       ---------->DOF2-- --------->DOF2    --------->ARR11(3)--------->ZAT14         <---------ANAC58 --------->ALFIN1     <-   tttaaagagatgcaccgggaagatgttaaggctaatcagttcacttatgggagtgttttgaagtcgtgtaaagatttggggtgtctgaaagaagggatgc  7247500                                                                             --------->ALFIN1                                                                             <---------ANAC46                                                                           --------->ZAT2                                                                           <---------ZAT2                                                                  <----------DOF2                                                            <----------DOF2<---------O2            --------->ALFIN1      <---------ZAT18           =========================bZIP_DOF          <---------ANAC46      --------->ANAC58           <---------ANAC58--------->O2          <---------ZAT6        --------->ANAC46           <---------ANAC58--------->TGA1a <-------TEIL                 <---------AtLEC2       --------->ZAT14       <---------TGA1a -------->CCA1(2)            --------->ZAT14         --------->ZAT18     <-----------RAV1(2)<------ZmHOX2a(1) ------->ARR14(2)            <---------ZAT14         <-------TEIL ===================bZIP_DOF  <----- --------ARR14(2)---------->DOF2--------->ANAC58     <---------ZAT14    ----------------->AGL1 <-----   agatacatggtagtgtggagaaagggaattgtgcagggaacttaattgtgagaagtgcattgctttctctttatgccaggtgtggaaagatggaggaagc  7247600  Previous    Next  AGI:  At3g20720.1    Description:  similar to hypothetical protein OsI_016901 [Oryza sativa (indica cultivar-group)] (GB:EAY95668.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56411.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39040.1); contains domain SUBFAMILY NOT NAMED (PTHR22774:SF4); contains domain UNCHARACTERIZED (PTHR22774) Range:  from: 7239914    to: 7247011    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g20730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G27610.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G12770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47896.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7247101    to: 7249151    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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