Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ----------->GT1                    <XXXXXXXXXXXXXXXXXXXXMIR841B* ----------->GT1                    --------->ANAC46         <---------YAB1               --------->TOE2(3)                    --------->ANAC58         --------->ICU4               --------->TOE1(3)               <---------ICU4              --------->YAB1          --------->YAB1                  <-               --------->AHL20(2)          <---------ICU4         <---------YAB1                <---- --------->YAB1<---------AHL20(2)       --------->YAB1    <---------ARR11(3)                  ------- ----------->GT1    --------->ANAC58  <---------WOX13(1)  --------->AHL20(1)            --------->ANAC58 ---->AGL1    --------->ICU4        --------->ATHB12     --------->AHL20(2)             --------->ANAC58 ---->AG ----------->GT1 --------->AtLEC2 <---------ATHB12--------->ARR11(3)        <-----------HVH21   taatcgtgaattagtaattaatacgacatgctaaaaattgattaatcatgtttagaaaaatatatactatgataaacctgaaattgtgtcacacaatttt  7229000                                                 --------->YAB1                                                <---------YAB1      ------->TEIL                          <---------GLK1(2)                                   <----  ------->TEIL                              <---------ARR11(3)                                  <---- --------YAB1   --------->GLK1(1)           --------->ARR11(3)                              <-------- -----YAB1 --------->ANAC46         ---------->DOF2 --------->AHL20(2)          --------------->AGL15 -->YAB1 <-----------GT1   <-----------GT1----------->ARR10         --------->YAB1          ---------   gatgaatgtatataccacatttccatattatacgttttaaaagtaagattttcataaattttaaaattattcataacattcactaaaattagatgtgtat  7229100                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                             <-----------GT1                                                                             --------->ZAT6                                                                           <-----------GT1                   <---------YAB1                                       <---------ARR11(3)                  --------->TOE2(3)                                     --------->AHL20(1) <-----------GT1<---------YAB1                                          <---------AHL20(1)          < -----YAB1     <---------ARR11(3)                                       --------->ARR11(3)         -- -----AHL20(2) --------->ARR11(3)                                     <---------ARR11(3) --------->YAB1 -ANAC46      --------->CCA1(1)                                       <---------AHL20(1) <---------ICU4 -->GT1       --------->RVE1(1)                        <---------YAB1 --------->AHL20(1)<---------ATHB12   aattaacaaactaaaaatatcattaatctactattttagtagttattttgcgaaaatatgtttgagttacaaaatattttcactatttaaatcatgtcga  7229200            ----------->GT1                                                           <-----------GT1        --------->ZAT14                                                           --------->AHL20(2)        <---------ZAT14                                                           --------->YAB1       ----------->HVH21--------->WOX13(1)                                --------->ZAT18       -----     ------>MYB46(1)  <---------MYB52(1)                     ----------->GT1     <---------ATHB51     ------>MYB83    --------->LBD16              <------ZmHOX2a(1)      <---------ANAC58      <-----   --------->MYB46(3)<-----------HVH21         <-----------RAV1(2)       <---------ANAC58   <-------- -----------GT1---------->TaMYB80              <---------LBD16--------->TOE2(3)--------->WOX13(1) ------->KAN4(2)<---------GLK1(1)        <---------ATHB12    <---------ANAC55(2) <---------ATHB12   -   ttatacccactgaagggtatttccgtcaatcccaattctaacaatgaattcaggagtataaaaacgtaaattcaagcgtgccaattataaaccgtcgatc  7229300                                          <---------YAB1                --------->ZAT14                          <------ZmHOX2a(2)                             <---------ZAT14                --------->At5g28300<---------WOX13(1)            ------->GAMYB          <-----------GT1               ----------->GT1    <------------CBF         --------->ANAC46          --------->YAB1<-           --------->MYB46(3)    --------->ATHB12         --------->WOX13(1)        <---------AHL20(2) ---->YAB1 --------->ANAC46  --------->LBD16          <---------ICU4    <---------REM1(2)     ------- -ZmHOX2a(2)------->GAMYB<---------ARR14(2)--------->ATHB12--------->ANAC58     <-----------TBP    -- -ETT(2) --------->MYB52(1)------>ZmHOX2a(2)<------------CBF    --------->MYB46(3) --------->AHL20(2) -------->GLK1(2)        --------->ARR14(2)--------->ATHB51--------->ANAC58 ----------->GT1 ---------   ataatctaatccaacggcagtaacatcgatccgcgtgattgtttattattggataagaatcactcaaccgtctctacacagtatatataataaccaaaga  7229400                                                                                       <------NtERF2                                                                                       --------->At5g28300                                                                                      --------->LBD16                                                                                     <------NtERF2                                                                                    <------NtERF2                                                                                    <---------LBD16                                                                                   <---------ATERF1(1)                                                                                 <-----------HVH21                                                                                <------NtERF2       <                                                                               <---------MYB46(3)   -                                                                               --------->MYB55(2)   -   ------>ZmHOX2a(1)       --------->ANAC58   <---------DAG2                  <---------ANAC58      < --------ZAT18 --------->YAB1           <-----------GT1                       <---------ANAC46      < --->DOF2    *TSS          --------->ANAC58   <----------DOF2                 <---------ANAC58     <- ------->ZAT18 --------->TOE2(3)     <---------KAN4(2)                       <---------LBD16    <---- ->DOF2     <---------CCA1(2)    --------->YAB1                              <-----------------------TaNAC69(2)   gcgtcctcttacgcttatcttaatttccctcgcattgagaattttcaactttttctatctctcttcccaaatcacaaatggcgggtcgcggcaaaactct  7229500                                                                                                   --                                                                                                  ---        <<<<<<<<<MYB2                                                                           -----       <-------GAMYB                                                                            -----      <---------ANAC58                                                                          -----      <---------ANAC58                                                                          -----      <---------ANAC46                                            <---------CCA1(2)            ------  ------>ZmHOX2a(2)                                              <---------SPL7             --------- <------ZmHOX2a(2)                                           <---------MYB46(3)             --------- ---------AGP1                                               <------MYB46(1)           --------->ANAC58 -------->ARR11(3)                                           <------MYB83              --------->ANAC58 -------->ARR14(2)                   ---------->DOF2        <---------AtMYB61    ==================== -----------ARR10                  --------->At4g35610     <---------MYB52(1)    ---------->DOF2<---- ---------ARR14(2)              --------->At4g35610       <-------GAMYB <---------TOE1(2)  <--------- --------CCA1(2)           <---------HSFB2a(2)            --------------------->WRI1  --------->RAP2.6(3) -----LBD16                --------->HSFB2a(2)       XXXXXXXXXXXXXXXXXXXX>MIR841B*   --------->MYB52(1)   cggatctggcgttgctaagaaatcaacatcgagaagcagcaaagccggtctccaattccccgttggtcgtatcgctcgttttctaaagaacggcaagtac  7229600         <------MYB83         <------MYB46(1)       <--------P     --------->ALFIN1     <-----------RAV1(1)    <-------MYC2    <-------MYC3    ------->MYC3    ------->MYC2    <-------MYC4    ------->MYC4   --------->TGA1a<---------ZAT2   --------->ANAC55(2)   --------->O2   --------->At4g35610   <---------O2   <---------At4g35610   <---------TGA1a--------->ZAT2           --------->HSFC1(1)   =============MYC_MYB                    --------->HSFB2a(2)   <---------ANAC55(2) --------->LBD16     <---------HSFB2a(2) <---------ALFIN1 <---------GLK1(1)     <---------MYB52(1) --------->RAV1(1)--------->GLK1(1)   --------->DEAR3(1)            <---------ICU4 ------>ANAC46<---------ANAC46       <------NtERF2                 --------->ICU4 ---->ANAC58  --------->ETT(1)     --------->RAP2.6(2)        ----------->GT1 ---->ANAC55(2) <------NtERF2      --------->RAP2.3(2)       <---------TOE2(3) ---->ANAC46 <---------LBD16       --------->ANAC46       <----------CDC5 ---->ANAC58 <------NtERF2         --------->DEAR3(1)    <---------At4g35610 --->ZAT18  ------>NtERF2         --------->MYB46(3)     ----------->RAV1(2)                  <------ >ANAC58 <---------MYB46(3)       --------->ERF1         ------>NtERF2                       -------- >ANAC58<---------AtMYB61         --------->ATERF1(1)    --------->At4g35610                <-------- ============bZIP_DOF<---------LBD16------>NtERF2       --------->DEAR3(1)             <---------ARR11(3) -----ANAC55(2)--------->LBD16   --------->At4g35610 --------->ANAC46<-----------GT1   --------->ARR11(3) ------AtSPL3--------->ATERF1(1) <---------At4g35610 <---------DEAR3(1)               <---------CCA1(2)   gcaacacgtgttggtgccggagctccggtttacttagccgccgttctcgaatacctcgccgctgaggtaattatccccttctctccctatatctctttac  7229700                                                       <------MYB83                                                       <------MYB46(1)                                                     <--------P                 <---------ZAT2                                                   <---------REM1(1)            --------->At4g35610                                                   <---------ANAC46             <---------At4g35610               <---------ANAC58                 <-----------RAV1(1)             --------->ZAT2               <---------ANAC58               <---------ANAC46                 ------->TEIL      ------>ZmHOX2a(2)                      <---------MYB52(1)             --------->ANAC46    <---------ARR11(3) --------->TOE2(3)   <-----------RAV1(1)              --------->ANAC58    --------->ARR11(3) --------->TOE1(3)  ------>ZmHOX2a(2)                 --------->ANAC58 -----GT1      <---------ANAC46         <---------AGP1<---------TOE1(2)  <---------ARR14(2) ->ZAT14       ----------->GT1          --------->ARR14(2)               --------->ARR14(2) --DOF2        <---------ANAC55(2)      <---------ARR14(2)           <---------ANAC46   tctttcgatcttcaatttcgtaaaaccctaatttctaaattggatctgttgtgttgtaggtattggaattggctggaaacgcagctagggataacaagaa  7229800              <-----------HVH21              <-----------TGA1             <---------bZIP60(1)             --------->O2             <---------ANAC55(2)             --------->ANAC55(2)             --------->ANAC55(1)             --------->ANAC46             --------->ANAC58             <---------O2             --------->TGA1a             <---------TGA1a             --------->bZIP60(2)             --------->bZIP60(1)                             <---------ANAC58             <<<<<<<<<<HY5                                   <---------ANAC58             --------->ANAC58                                <---------ANAC46            <-----------STF1                           <---------ZAT14           <---------ALFIN1                            --------->ZAT18    >>>>>>>>>ARR2              --------->At5g28300     --------->ZAT14                            <--    >>>>>>>>>ARR1           <---------LBD16     --------->At4g35610                          --------    >>>>>>>>>ARR1       <---------ZAT2          <---------At4g35610        --------->ATHB12  <-------    >>>>>>>>>ARR2       --------->At4g35610     <---------ZAT2            <---------YAB1    ---------   <------ZmHOX2a(1)    --------->ZAT2          --------->ZAT2         ----------->HVH21    ---------  <---------YAB1        <---------At4g35610   <------ZmHOX2a(1)        ----------->TGA1   --------->ALFIN1   gactaggattgtgccacgtcacattcagctcgcggtgagaaacgatgaggagctgagtaaactgcttggagatgtgacgattgctaatggaggtgtgatg  7229900  Previous    Next  AGI:  At3g20670.1    Description:  HTA13; DNA binding. Identical to Probable histone H2A.2 [Arabidopsis Thaliana] (GB:Q9LHQ5); similar to HTA10, DNA binding [Arabidopsis thaliana] (TAIR:AT1G51060.1); similar to unknown [Populus trichocarpa] (GB:ABK94182.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 7229413    to: 7230152    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version