Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->AtMYB61                --------->MYB46(3)                <---------MYB55(2)              <---------ARR14(2)              --------->ARR14(2)           <---------ANAC55(2)                                                          <---------HSFB2a(1)           --------->ANAC58                                                             <---------HSFC1(2)           --------->bZIP60(1)                                                          --------->HSFC1(2)           --------->ANAC58                                                   --------->ANAC58           <---------bZIP60(1)                                               --------->DAG2           --------->ANAC55(2)--------->ANAC58                              ---------->DOF2          <---------LBD16     --------->ANAC58                           <------ZmHOX2a(1)        ----------->HVH21<---------ANAC58       ------>ZmHOX2a(1)     <---------At4g35610    --------->At4g35610  ----------->RAV1(2)  ----------->RAV1(2)     --------->At4g35610    <---------At4g35610  <---------ANAC58 --------->At4g35610         <------NtERF2     --------->HSFB2a(1)  <-----------RAV1(2)    <---------ANAC46 <---------At4g35610  ---------->DOF2--------->ANAC58<------   tgactcagatgtgacggaaccaccattgcctgaagcaagaagtcagcctcctgcttcttctccatcaaaggcagaggaaaaagcaatagaagttcccttt  7165700                                                                              --------->ARR14(2)                                                                         --------->ZAT14                                                                         <---------ZAT14                                                                ------>MYB83  --------->GLK1(2)                                                                ------>MYB46(1)                       <---------ZAT18            --------->ANAC55(2)    --------->ZAT18    ---------                      <---------ANAC58       <---------ZAT6   ------->GAMYB   <---------ARR14(2)                      <---------ANAC46     ----------->GT1   --------->MYB46(3)             <--------                      <---------ANAC58   <---------ZAT14     <------------MYB.PH3(1)        ---------  --------->YAB1<---------YAB1           --------->ZAT14   <-----------GT1    <---------ARR11(3)<---- ----DOF2      xxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1 --------->DEAR3(2)           ------->TEIL   gcatttatagccatggctattcttgtgtgcttcttcatttcagtttagtgataagtgtttgtaaccgacttcgactgcagtatctgcaagtgaaccttat  7165800                                                 <---------GLK1(1)                                                 <---------CCA1(1)                                                 --------->CCA1(1)                                                 --------->RVE1(1)                             <----------DOF2     --------->GLK1(1)                             <---------------AGL15         <-----------GT1                             --------------->AGL15--------->ARR11(3)                            <-----------------AGL3<---------ARR11(3) --------->YAB1        <---------YAB1            <---------RVE1(1) >TOE2(3)           <---------YAB1              <---------ARR11(3)                   <------ZmHOX2a(1) -DAG2             <<<<<<<<<<GT-1  <---------TOE2(3) <---------HSFB2a(2)    <---------RVE1(1) >TOE1(3)          <---------ARR11(3)           --------->ARR11(3)         <---------ARR11(3) -----YAB1--------------->AtSPL8   <---------TOE1(3) --------->HSFB2a(2)   --------->ARR11(3)    ----   gaataacaatgtctagtactatatcattcttctttttaaggtttcaataagatatctagaattacaaatttagaagagatattaataggaatatggaaat  7165900                                                                                         ------>MYB46(1)                   ----------->RAV1(1)                      ------------>CBF             ------>MYB83          <----------DOF2                            --------->ZAT6                    ------->GAMYB          --------->TOE2(3)                        <-----------GT1         --------->ANAC46          --------->TOE1(3)                    <----------DOF2             --------->ANAC58    --------->TOE1(3)                         ------>ZmHOX2a(2)            --------->ANAC58       <--    --------->TOE2(3)                       --------->ARR11(3)     <---------GLK1(2)  --------->MYB46(3) ------->GT1--------->AHL20(2)              <---------ARR11(3)  <---------ATHB12    <-----------GT1 -   ggataaacttaactttaaatccaacaaaaccaaaattagcttatttgatcttttaactctcttccaatggattcttcacccaaatttaaccatccattta  7166000                                    --------->DAG2                                --------->YAB1                           <<<<<<<<<ARR2                                            <----------DOF2        ----------->GT1  --------->WOX13(1)                                     <----------DOF2     ---------->DOF2   ------------>CBF      --------->GLK1(2)           ---------->ID1 <------ZmHOX2a(1)  --------->AHL20(2)    ----------->ARR10            <---------MYB46(3)  ------>NtERF2 -------LBD16--------->YAB1<---------ATHB12 <---------GLK1(2)          --------->MYB52(2) <----------ID1 ---------->GT1 --------->AHL20(2) --------->MYB52(1)*TSS             --------------->AtSPL8   ------   tcaggaaaaaaggaaacataaaataaacaatcaaacataagggaaagattctaagtggcaaactcatttttgtttgttccttctttcttttgaggccaaa  7166100                                                                                          <---------AHL20(2)                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(2)                                                                                         --------->AHL20(1)                                                                                         <---------AHL20(1)                                                                                     <---------AHL20(2)        <-------TEIL                                                                <---------AHL20(2)      <---------ARR14(2)            --------->TOE1(3)                               --------->AHL20(2)      --------->ARR14(2)            --------->TOE2(3)                       <-----------GT1      <---------GLK1(2)          <---------ALFIN1 XXXXXXXXXXXXXXXXXXXX>MIR398A      --------->AHL20(1) ---->DOF2               ---------->DOF2  <---------AHL20(2)     <----------DOF2    <---------AHL20(1)   agagaccagattcatttttggtttcttcaaaggccaaaccttattttcttattttctcagacaaacccttttgccatattacaaaataaaatttattcgt  7166200                                                                     --------------->AGL15    -------                                                     --------->HSFB2a(2)                     <-------                       <---------ARR14(2)            <---------HSFB2a(2)                 <------ZmHOX2a(1)                 <----------DOF2           --------->YAB1        --------->YAB1        --------->LBD16              ------>ZmHOX2a(2)        --------->KAN4(1)        <---------ATHB12      <---------LBD16        --------->YAB1 --------->ARR14(2) <-------TEIL        --------->WOX13(1) --------->ICU4<-----      <---------ARR11(3)              <---------KAN4(2)   --------->WOX13(1)   --------->YAB1<-------      --------->ARR11(3)        <-------TEIL    ------->TEIL<---------ATHB12----------->GT1  --------   ctgagaattatcttgatcccttttggattcgaggttcaagaacattcatgaacttcgagtaaatcaatcatcttcttgtagtaataatccaggaagatac  7166300                                                                             <---------YAB1                                                                           --------->YAB1      ------->GAMYB                                                 ------->GAMYB -->CCA1(2)                       <---------ANAC58   ----------->RAV1(1) <---------ARR11(3) --ARR11(3)                       <---------ANAC58   <---------ALFIN1    --------->ARR11(3) --TEIL                           <---------ANAC46--------->PCF2   --------->MYB46(3) --ARR14(2)           --------->YAB1      <-------GAMYB --------->DEAR3(1)<------ZmHOX2a(2)    ------ ->ARR14(2)          ----------->GT1     <-----------RAV1(1)     <-----------GT1       ---------->DOF2   attatcaacacacataaaacagaatgaaaatcaattgcttgttctgttgtatgtcccacagacgatttaacagacgatcatcatcgagacaaagcatcaa  7166400                                                                                --------->AHL20(2)                                                                             --------->YAB1         --------->AtLEC2                                               <----------DOF2  <---------ZAT14                            <----------DOF2           <---------DAG2  --------->ZAT14       <-----------GT1 <---------ARR11(3)          <-----------GT1 ---->DOF2  ---------->DOF2       <-----------GT1        --------->PCF2--------->TOE2(3)           --   agactgcattgatgcaaagaacaatataactacatttgacaacatctcttttaaaacaggtcccattttctaacctttttcattatatgcattctcaaat  7166500                                                                                 <------ZmHOX2a(1)                                                                              --------->LBD16                                                                              <---------LBD16                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                  --------->ARR14(2)                     <---------GLK1(1)                               <---------ANAC46                        --------->ANAC55(2)                 <---------HSFB2a(2)                                   <---------ANAC55(2)                 <---------------AGL15                                <-------TEIL                 --------->HSFB2a(2)                                 --------->CCA1(2)             <----------DOF2   <---------ANAC58                     <---------ARR14(2)        <----------DOF2        <---------ANAC58                     --------->ARR14(2)   ---------->DOF2 ---------->DOF2<---------ARR14(2)                <---------ARR11(3)              - ------->TOE2(3) --------------->AGL15      --------->MYB52(1)    ----------->ARR10                --   cccttaaaagcttttctttctaaaagaagcgaggcgtatttgcacatacctgcagatagcagtaggcgaagatacatatccgaggagatagcaaaactcg  7166600  Previous    Next  AGI:  At3g20520.1    Description:  glycerophosphoryl diester phosphodiesterase family protein. similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66970.1); similar to MRH5/SHV3 (morphogenesis of root hair 5), glycerophosphodiester phosphodiesterase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26690.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) Range:  from: 7162834    to: 7165865    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g20530.1    Description:  protein kinase family protein. similar to PBS1 (AVRPPHB SUSCEPTIBLE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G13160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39431.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 7166053    to: 7167935    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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