Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->CCA1(2)                                              <---------ANAC58         --------->ATHB12                      <----------DOF2         <---------ANAC58        <---------YAB1 -------->DOF2       <---------DAG2   <------ZmHOX2a(1)  --------->ICU4<---------ICU4 ---->AtLEC2 <---------TOE2(3) ---------->DOF2<---------ANAC46        --------->ICU4              ---   gcaaagacaagttttatggattaccttttcatctaaagaaggagcattgcgtcgaagaaatgaatagagaccatgattaagagagacacgagcgagtttc  7120500                                                             <------MYB46(1)                                                             <------MYB83                                                             <---------ANAC46                                                             <---------ANAC55(2)                                                            --------->MYB46(2)                                                            --------->MYB59                                                            --------->MYB111(1)                                                            --------->MYB52(2)               --------->At4g35610                         <---------MYB55(1)            --------->At4g35610     <-----------RAV1(1)   <---------MYB52(1)            <---------At4g35610     --------->ALFIN1    --------->ANAC58        --------->TOE2(3)         <---------ANAC58      --------->ANAC58       --------->ZAT6             <---------ANAC58     --------->SPL7          <---------WOX13(1)      <---------TOE2(3)           <---------ANAC46   <---------SPL7         <---------TOE2(3) ------------>AtSPL8    ------->GAMYB --------->ALFIN1 <-------TEIL--------->ANAC55(2)        -------   tcagtactaacattagctgctctcaacagagacaagtcgtgtggctcaaggctagggtacgttaggtataggtaatttgagattgctaaaccaatagcac  7120600                                                  --------->ALFIN1                                                  <---------ANAC46                                                --------->ALFIN1                                           --------->ANAC46                                        <---------REM1(2)                     --------->ANAC58   --------->ZAT14                                           <--          --------->ZAT6       ---------->DOF2  <---------ANAC46<---------ANAC58   --------->ANAC55(2) -->ZAT6 ------->TEIL--------->ANAC58   <---------ZAT14         <---------ANAC58 <-----------GT1  <--   tatcgcctatgaactctagccgctcgtaagaaggaaagtctgtacacgaggtgtgtgtaatcgcttccttgagaagactcttgttactgaatttgtagtt  7120700                                                                                           --------->RAP2.6(3)                                                                                          <---------ARR14(2)                                                  XXXXXXXXXXXXXXXXXXXX>MIR168A/B          --------->ARR14(2)                                               --------->ANAC58                          --------->GLK1(1)                                           --------->LBD16                               <---------GLK1(1) <-----------ARR10                     <---------ARR14(2)                               --------->ARR14(2) --------->ARR11(3)                    --------->ARR14(2)                               <---------ARR14(2) <---------ARR11(3)                 --------->ANAC46   <---------At4g35610            <---------MYB46(3) --------->GLK1(2)                  --------->ANAC58<------MYB46(1)                  <---------ANAC46 <---------ARR14(2)                 --------->ANAC58<------MYB83                     --------->ALFIN1 --------->ARR14(2)               ------>NtERF2--------->ANAC58  ---------->DOF2  --------->ALFIN1 -------ANAC58                   --------->DEAR3(1)<---------MYB46(3)             <---------DEAR3(1) -------ANAC58          --------->ANAC46 <---------LBD16 ----------->HVH21  <---------HSFB2a(2)  <---   gagtatcttctctactgcttccatagactccatctccgacgaaaccggaacgcttggtgctgatggggaaagagaattgtagaagcggtggatatcggcc  7120800               <---------MYB46(3)        <---------AtMYB61        --------->ALFIN1    <---------ZAT14           ----------->GT1                   <------NtERF2    <------NtERF2           <------ZmHOX2a(1)                  ----------->GT1  --------->ANAC58      --------->ALFIN1                       <------NtERF2  --------->ANAC46   <---------DEAR3(1)                        --------->LBD16  --------->ANAC58<---------SPL7                             <---------LBD16<---------LBD16 --------->RAP2.6(3)<---------ORA47(1)         <---------ZAT14<---------LBD16  <-----------HVH21 ---NtERF2    <---------AtMYB61       ----------->GT1        <---------ANAC46 --------->LBD16 ------>ZmHOX2a(2)   gaagacggcagtggtgatggtggacggtgaggaagtgaattggataaactacagcgagtgatggccgggaaattgtactccggtgagatagagtgatcca  7120900                    ------>NtERF2                                                                   -                   --------->ANAC58                                                            ------                   --------->ANAC46               --------->AHL20(2)                          <------                   --------->ANAC58               <---------AHL20(2)                         <-------                 --------->CCA1(2)               --------->AHL20(2)                         ---------            ---------->DOF2                    <----------DOF2      ------>ZmHOX2a(1)      <---------YAB1        <-----------ARR10                     <------------------------ANAC81          <----------DOF2        --------->GLK1(2)                  <-----------GT1         <---------MYB59     <---------DAG2       <---------GLK1(2) *TSS        ------------>CBF   <----------DOF2             <-----------GT1 <   tggtagagagaatctaaagagacgccaagtcttctctgtttcaattttccttttaattctttttgttttcctaattctattagttttgactttttcattg  7121000                                             --------->AHL20(1)                                             <---------AHL20(2)                                             <---------AHL20(1)                                            --------->YAB1                                            --------->AHL20(2)                                           <---------YAB1                                        <---------AHL20(1)                                    --------->AHL20(2)                  <----------DOF2                                <---------AHL20(2)               <---------AHL20(2)       ------>ZmHOX2a(1)      --------->AHL20(2)                 --------->AHL20(2) -------->ZAT14         ----------->GT1 --------->AHL20(1)   <---------YAB1--------->AHL20(2) --->WRKY38(1)        ---------->DOF2   --------->AHL20(2)   <---------AHL20(2) ---WOX13(1)         <------ZmHOX2a(1)  <---------AHL20(2)   --------->AHL20(2)                <----- -----CBF   <-----------------AG--------->AHL20(2)          --------->AHL20(1)    <---------TOE2(3) >ATHB12   <------ZmHOX2a(1)  <---------AHL20(2)            <---------AHL20(1)  ---------->DOF2<----- ---------ZAT14    <---------TOE2(3)<---------AHL20(2)      --------->AHL20(2) <---------AHL20(2) <--   actatagtcctcaggacaaataaggaaagtatatatatataatttattatattggggcaaaatataattaaaaacttttatataaaggaaatggattaag  7121100                                             <-----------GT1                                         <---------ARR11(3)           ----------->GT1               --------->ARR11(3)       ---------->DOF2                 ----------->ARR10    --------->TOE2(3)              <---------At4g35610                        --------->ALFIN1   <-----------------AGL1    --------->TOE2(3)                              <---------ANAC46 ----TOE1(3)                 --------->TOE1(3) <---------ANAC58    ----------->HVH21 ----TOE2(3)     <---------ICU4    --------->At4g35610             ----------->TGA1 --------DOF2   --------->ICU4  ---------->DOF2<---------ANAC58 <---------MYB46(3)             ------   cttttttcttaaagggcaaaaattgcctaaaccctaaagctgagatttttcttgctcagtattgggtcgatgacgatgaagtgtgtgttttgttgataat  7121200                                                                                <----------DOF2      <---------MYB46(3)                                                    ------>ZmHOX2a(2)     --------->ALFIN1                                                  <---------WOX13(1)      <-----   <-----------RAV1(1)                                                <------------CBF         ------   --------->ALFIN1  ---------->DOF2    <---------At4g35610         <---------YAB1        ----------- --->GLK1(2) ------>ZmHOX2a(2)         --------->MYB52(2)        --------->GLK1(2)   <------------CBF   ctcgagtgtgggtgatcgaagagcaaaggaagtcccaaggttagcttcttattttgtttatttcgcgattctaattgatctactttgtattgagcaattt  7121300 ----AHL20(2)                                     <---------TOE2(3) --->AHL20(2)               <------------CBF      <---------YAB1                            <-------- ->CBF <-------TEIL        --------->ATHB12   <---------GLK1(2)                        <---------AtLEC2   tttgagagattcatgtttttgaaatcgtgttattggatgttcttgtgagattatcgttgtaaatgtaaatggtttcgaagtttttgtttgaatggattgg  7121400  Previous    Next  AGI:  At3g20420.1    Description:  RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III.. similar to RTL3 (RNASE THREE-LIKE PROTEIN 3), double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT5G45150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38913.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 7119288    to: 7120925    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version