Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ----------->GT1             <----------DOF2                <-                                   <---------TOE2(3)            ------->GAMYB                     ---                                   --------->ANAC58          <-----------GT1           <---------TOE2(3)           ------------>CBF        --------->ANAC58  --------->ANAC58       <----------DOF2       ---       --------->TOE2(3)      --------->WOX13(1)     --------->ANAC46     ---------->ID1         ---- ----ARR14(2)             --------->WOX13(1)       --------->MYB52(1)    <-----------GT1<---------YAB1 --->ARR14(2)     --------->At4g35610 ---------->DOF2--------->ANAC58<------------------------ANAC81   actactatttcttaacaatgagatgaggcaatctatcaaggaaagtaaaaaaaaaacgaaacttaaccctctttttttctttttttttttatgttagacc  7103900                                                 <---------AHL20(2)                                                <---------AHL20(2)                                             --------->AHL20(2)                   --------->LBD16           <---------AHL20(2)                  <---------ANAC58         <---------AHL20(2)                  --------->ANAC55(2)    <---------AHL20(2)                  <---------ANAC55(2)   --------->AHL20(1)           <-----------GT1                < --------ATHB12   <---------ANAC58      <---------AHL20(1)         <---------ICU4           --------- --->MYB46(1)     ----------->GT1      <---------AHL20(2)     --------->AHL20(2)          ---------->DOF2 --->MYB83    <---------GLK1(2)    --------->AHL20(2)   <---------AHL20(2)            ---------->DOF2 ----->WOX13(1)--------->GLK1(2) --------->AHL20(2)     --------->AHL20(2)       --------->YAB1     -   aatcacttcttgaaaagattccgtaactagacgatttttatatatatttttttattttttaatttttaatatttccacttcaaatataaaaagaaagtat  7104000                 --------->ICU4                 <---------YAB1               --------->YAB1                                                      --------->TOE1(3)               <---------ICU4                                                   <-----------GT1      <---------YAB1                                                      ----------->GT1 ---------AHL20(2)--------->YAB1                     --------->ARR11(3)   <----------ID1 -->GT1       --------->ICU4<---------YAB1     --------->AHL20(2)       ---------->DOF2 -------->AHL20(2)--------->ATHB12    ----------->GT1>>>>>>>>>>GT-1----------->GT1 --------->TOE2(3)   atttatttgttatagaattatgattagaatatgaatacaaatgtaaaaaaaaaatgatatagaattctatagaaaaaagaaaaaaccttataagctagtc  7104100                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                     xxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   --------->MYB46(3)                                                                                   xxxxxxxxxxxxxxxxxx                                                                  <-------GAMYB    xxxxxxxxxxxxxxxxxx                                                                 --------->MYB55(2)xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 <---------MYB46(3)xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <---------DEAR3(2)xxxxxxxxxxxxxxxx>smallRNA(s)                                                                <---------DREB2C(2)<------NtERF2 xxxx                                                                <---------RAP2.6(2)xxxxxxxxxxxxxxxxxx                                                                <---------ANAC46   xxxxxxxxxxxxxxxxxx                                                          <---------YAB1           xxxxxxxxxxxxxxxxxx                                                   --------->YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          --------->AHL20(2)      <---------YAB1<---------ANAC58   xxxxxxxxxxxxxxxxxx                          --------->YAB1         <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------AHL20(2)                --------->ARR11(3)--------->ALFIN1xxxxxxxxxxxxxxxxxx               <---------AHL20(1)               --------->YAB1  <---------ANAC58   xxxxxxxxxxxxxxxx>smallRNA(se3)               --------->AHL20(1)              <---------YAB1   <---------DEAR3(1)------>NtERF2<-----               --------->AHL20(2)       --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(s)<---------ALFIN1              --------->AHL20(2)       <---------YAB1   xxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxx   ataccatttcatttcattatattgacaattaaaaaaaactgatcatactatgatcatagtatgatggcggttgagcaagtatgcccccatcgtctagtgg  7104200                                                            --------->ANAC58                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <----------DOF2                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------ZAT18     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             --------->ZAT18     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------------AtSPL8     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <------MYB83     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <------MYB46(1)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <--------P--------->ANAC58  <------ZmHOX2a(1)                  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(s) >smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)--------->ANAC46 xxxxxx>smallRNA(si3)          <---------ARR14(2) --------->ALFIN1 xxx>smallRNA(si3)             --------->ARR14(2)<---------SPL7 xx>smallRNA(fl3)        <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(s)--------->ZAT2    <---------LBD16 xxxxxxxxxxxxxxxxxx>smallRNA(se3) xx>smallRNA(s2)         <---------ZAT2xxxxxxxxxxxxxxxx>smallRNA(s) >smallRNA(se3)          <---------At4g35610<---------STY1(1)                             --------->DAG2 xxx>smallRNA(fl3)       --------->At4g35610--------->STY1(1)                            ---------->DOF2 xxxx>smallRNA(se3)   <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(s)                       --------->TOE2(3) xx>smallRNA(se3)     --------->ATERF1(1) ----------->RAV1(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----MYB46(3)xxxxxxxxxxxxxxx>smallRNA(le3)<---------LBD16xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s) ---------->DOF2   <---------GLK1(2)   -   ttcaggacatctctctttcaaggaggcagcagggattcgacttcccctgggggtagggtactacgaaaggaagttgatcatggattatccataaagttag  7104300                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                <---------ARR14(2)                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                --------->ARR14(2)                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                         <---------MYB46(3)                                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                     --------->ANAC46<---------ZAT2                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <---------ZAT14  <---------At4g35610                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxxxxxxxxxxxxxxx>smallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------DEAR3(1)      --------->ANAC58          xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               <---------MYB46(3)      --------->ANAC58          xxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               *TSS         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxx>smallRNA(si3)          x               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   x               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   x               xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxx>smallRNA(fl3)         x               xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   x               xxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxx>smallRNA(se3)         x               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    x               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)        x               xxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxx>smallRNA(s2)         x               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      x               xxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          x               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s)--------->ZAT2 x               xxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ----               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   xxxx               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ----               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ----               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>NtERF2               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---              xxxxxxxxxxxxxxx>smallRNA(le3)  --------->At5g28300xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  x             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-----          ------>ZmHOX2a(1) --------->At5g28300        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     -----          --------->LBD16  ----------->GT1  ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<----         <---------LBD16 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(se3)     <----        ----------->RAV1(2)<---------MYB46(3)xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------GLK1(2)------>NtERF2      --------->SPL7  <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(s)x ---------->ARR10 xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-------TEILxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xx   aatagattcttcctgggtcgatgcccgagcggttaatggggacggactgtaaattcgttggcaatatgtctacgctggttcaaatccagctcggcccaat  7104400       <---------ETT(2)       --------->ETT(2)     xxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At4g35610  <---------At4g35610 xxxxx>smallRNA(fl3) x>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(se3) ----->ATHB12 xxxxxxxxxxxxxxxxx>smallRNA(se3) ----->YAB1 ------ICU4 ----->ATHB51 -----ATHB1                                                   ----------->GT1 ---------ATHB5                                               <----------ID1 -----HAHB4                                          ----------->GT1 xxxxxxxxxxxxxxxxxx>smallRNA(le3)                    --------->ANAC58 ---->AHL20(2)                                       --------->ANAC58                               < ---->ICU4--------->ANAC46                         <--------P--------->DAG2        xxxxxxxxxxxxxxxxxx -----ATHB51        <---------AHL20(2)           ----------->GT1  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ATHB12 <-----------GT1         ----------->HVH21     ---------->DOF2        <---------ANAC46  < xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ARR14(2) <--- xxxxxxxxxxxxxxx>smallRNA(si3) <---------AtLEC2 <---------------AtSPL8  <---------LBD16        <-----   aattagctgtctacataaccattttttttttttgcataaatgacagagaaggggtaagaaaaaaaggtcaaatttcagggtatagggtatagttcgactt  7104500                                                                                      <--------------                                                                                      <----------DOF2                                                                     <------ZmHOX2a(1)---------------                                                                     ======================HOX2a_HOX2a                                                                     =====================HOX2a_HOX2a                                                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   <---------TOE2(3)  ------>ZmHOX2a(1)                                                            =================================HOX2a_HOX2a                                                            ================HOX2a_HOX2a                                                            ------>ZmHOX2a(2)      <------ZmHOX2a(2)                                                          <---------ARR11(3)      --------->ARR14(2)                                                      ======================HOX2a_HOX2a                                                      ------>ZmHOX2a(2)           ------->TEIL                                                     =======================HOX2a_HOX2a                                                     <------ZmHOX2a(2)        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------DAG2         --------->ARR11(3)      <---------ARR14(2)        <---------AHL20(2)   <----------DOF2        --------->ARR14(2)--------->ARR14(2) ---------DAG2            <-----------GT1        <xxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR14(2) >smallRNA(fl3)        ----------->GT1      <---------AHL20(2)     <---------TOE1(3)------>ZmHOX2a(2) ----------DOF2   <---------YAB1            --------->AHL20(2)    xxxxxxxxxxxxxxxx>smallRNA(le3)   <- --------GT1     <---------TOE1(2)    --------->TOE2(3)   --------->ARR11(3)--------->ARR14(2)     -- -----DOF2       <---------TOE2(2) <-----------GT1  <---------ARR14(2)<---------ARR14(2) ---------->DOF2   tacttttttttttatttcttatgtttagttacttttttttccataaaaaattccgatcttgatcttgctaaggattccgatatggatcctttaaagagaa  7104600                                                                         <-------GAMYB                                                                        ----------->GT1                                                                        <---------MYB46(3)                                                           <---------At4g35610                                                           --------->At4g35610                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    --------->ATHB12    <------MYB83                                                <---------AHL20(2)      <------MYB46(1)                                             --------->AHL20(1)       <--------P -AGL15                          <---------ANAC58  <---------YAB1    <-------GAMYB <------ZmHOX2a(2) >AGL15                 --------->GLK1(2)    <---------ARR11(3)     <---------MYB46(3)          <---- ---------DOF2----------->GT1    <---------ANAC58--------->YAB1     --------->MYB55(2)         <----- ------->TOE2(3)  --------->AHL20(2)         <---------AHL20(1)  <----------DOF2xxxxxxxxxxxxxxxxxxxxx   actttaatgaacagagtcgataaaataatctatttgcttctgttcaatatataatgactgaagctaactttggttggttaatccgatcagttcatcgatg  7104700                                                                                              <------                                                                                          <<<<<<<<<<GT-3b                                    <--------P                                       ------->TEIL                                <------MYB83                    --------->AHL20(2)<---------ANAC46 <-                                <------MYB46(1)                 <---------AHL20(2)<---------ANAC55(2)         ----------->GT1      <--------P            --------------->AtSPL8        <---------ANAC55(1) -----MYB46(3)                --------->ALFIN1      <---------------AtSPL8        --------->ANAC55(2) ----AtMYB61               --------->DAG2      --------->At4g35610             <---------ARR14(2) --- x>smallRNA(i2)          ---------->DOF2       <---------At4g35610             --------->ARR14(2)<---   gtcgtatagtttagttatttaggcaataaaaggtaggggttagaaattcagatgatggtacaaaaattaaaaatagatgccaatacgtatatttttctta  7104800  Previous    Next  AGI:  At3g20362.1    Description:  unknown protein Range:  from: 7103823    to: 7104256    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g20365.1    Description:  pre-tRNA. tRNA-Tyr (anticodon: GTA) Range:  from: 7104315    to: 7104398    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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