Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->CCA1(2)                                                                          --------->ARR14(1)                                                                         --------->ARR11(1)                 ----------->HVH21                                       <---------ARR14(2)               <---------ANAC55(2)                                       --------->ARR14(2)               --------->At4g35610                                       --------->ARR11(3)          --------->ANAC46                                         <----------DOF2              -----        <-----------GT1  ---------->DOF2                        <---------ARR11(3)   <<<<<<<<<CBP60g --------->AHL20(2)<<<<<<<GRF7                   <----------ID1 --------->ARR11(3)   <<<<<<<<<SARD1 --------->GT1 ----------->RAV1(2) --------->TOE1(3)    --------->DAG2   <---------ARR11(3)  -------- ------>DOF2 <---------ALFIN1      --------->TOE2(3)   ---------->DOF2 <---------TOE2(3)  --------->TOE2(3)   aaagtaaatttcacaacacctgacacatagagcaaaaccttagtccataagagaacaaaaagctaagaactttaagatatggtcccaaatttcattaatc  7062800                                                                                     ----------->RAV1(2)                                                                                     <---------LBD16                         --------->ANAC58                                      ----------------->AGL1                         --------->ANAC58                                    <-----------GT1              --------->ANAC58                                           <---------RVE1(1)              --------->ANAC46                                          <---------ARR11(3)              --------->ANAC58                         ------>ZmHOX2a(2)--------->ARR11(3)              <---------ANAC55(2)     <---------ARR11(3)                <---------GLK1(2)        ---- ---->YAB1    --------->ANAC55(1) --------->ANAC58     ----------->GT1<---------TOE2(3)          <--- ->YAB1       --------->ANAC55(2) --------->ANAC58<---------TOE2(3)   ----------->ARR10------>ZmHOX2a(1)   acaagaacaaaaaaacaagtaatcgacaagacatgaacgaaatctacatatcaaggatcgaaatttcagactaagatttttaccatttcctgaagctaaa  7062900                    ----------->GT1                  --------->YAB1                  ------>NtERF2              <---------ATHB12                   --------->RAP2.6(2)     --------->ARR14(2)        --------->At4g35610                      --------->ANAC46     --------->ANAC46        <---------At4g35610                      --------->ANAC58     --------->ANAC58      <---------WRKY12                           --------->ANAC58     --------->ANAC55(1)      <---------ZAT18========================HOX2a_HOX2a              --------->ANAC58      <---------WRKY38(1)                   ---------->DOF2        --------->ZAT18        --------->TOE2(3)      --------->ZAT14<------ZmHOX2a(1)<------ZmHOX2a(2)       ---------->DOF2            --------->YAB1 ----->AHL20(2)--------->YAB1        --------->ARR11(3)     <---------YAB1     --------->WRKY12 ------AHL20(2)<---------ICU4        <---------ARR11(3) <----------DOF2  <---------ARR14(2)  <-------   aaattcagtcaactcaataatcaggaaaaacaacaacaagatcatcaaaagacgccatctttataaaagcacacgaaaccgttgaactcattcattaacc  7063000                      ------>ZmHOX2a(1)                      =========================HOX2a_HOX2a                    ----------->RAV1(2)                  --------->ARR11(3)                  --------->ARR14(2)           <---------AHL20(2)                                 <--                  <---------ARR14(2)    <------ZmHOX2a(2)                                         <--                 <---------CCA1(2)     <---------ARR11(3)             --------->YAB1          <------               --------->YAB1         --------->GLK1(1)          <----------DOF2              <------     --------->MYB52(1)           --------->YAB1     ---------->DOF2 <---------YAB1           <------ ----GT1     --------->GLK1(2) --------->YAB1  --------->AHL20(2)<---------DAG2  --------->YAB1   <--   tcttcacaaacagagaatcatatcctgaagctataatcagagatcaaaattaaacaaaagacttaaactttatcattttctattcataaactagttcctt  7063100       <---------HSFB2a(2)       --------->HSFB2a(2)   <---------ANAC58                                               ----------->HVH21   <---------ANAC58                                             ----------->RAV1(2)   <---------ANAC46                                            --------->MYB52(1) -------ANAC58             <-------TEIL                        ------->TEIL -------AtLEC2            --------->CCA1(2)                 <---------ANAC55(2) ---ANAC46               <---------ARR14(2)                 --------->ANAC55(2)            ---------- ---ANAC58               --------->ARR14(2)                --------->MYB59--------->ARR11(3) ---ANAC58         --------->DAG2                      <---------ZAT6     <---------ARR11(3) -------ANAC58    ---------->DOF2  <------ZmHOX2a(1)  <------NtERF2   ----------->GT1    --------->AtLEC2   gcatgacttgtagaagaaaaaaaagtagatacagagaggaagagggaagaagaggcagagttaagtacctgatggtgatattcaagcttccatgaaagtg  7063200                  <---------AHL20(2)                  --------->AHL20(1)                  --------->AHL20(2)        --------->ARR11(3)    ---------->DOF2                           *TSS---------->DOF2   --------->AHL20(2)         <----- >DOF2  <---------ARR11(3)                  --------->LBD16 ----------->GT1      <----------DOF2   ttttctcaaagagcttgaaataaaatgtttgaagagagaagagacccagagaaaaagagagatagagaaattaaaactaaaccctttgaaaagtttgctt  7063300                                                                   <---------TOE1(3)                                                              <---------YAB1                                                            -------->ATHB1                                                            --------->ATHB12                                                            <--------ATHB1                                                            <---------ICU4                         --                                                            --------->ATHB51                       <-                                                            --------->YAB1                  ---------                                                           --------->ICU4            <---------AHL20(2)                                                           <---------ATHB51         --------->AHL20(2)                                         <---------DAG2    <---------ATHB12         <---------AHL20(1)                                 --------->TOE1(3)         <---------YAB1           <---------AHL20(2)                                 --------->YAB1        <------NtERF2            <---------AHL20(2) <-                    --------->ANAC58     <----------DOF2------------>ATHB5      --------->AHL20(2) --       <---------ANAC46          --------->TOE2(3)   <---------LBD16          <----------DOF2     --- -----DOF2          --------->ANAC58  --------->ZAT6<---------LBD16<---------TOE2(3)--------->AHL20(1)   caaggggcttcgtcgagtcaccaagtcaagactaatcttaacacttttttgtttctcggcaattattgtaaggttttagtctttaatttaatacacaaaa  7063400     ---------->DOF2    <---------AHL20(2)                                                                          -----    --------->AHL20(2)                                        <---------ARR14(2)              <------ ------->AHL20(2)                                             <---------GLK1(2)     <---------ATERF1(1) --------AHL20(1)                                             --------->ARR14(2)  <------NtERF2 <---- >ANAC46      <-----------GT1                           --------->ANAC46        <---------DEAR3(1) --------AHL20(2)                         --------------->AGL15        --------->ANAC58       ------- ------->AHL20(1)                   <---------ICU4--------->At4g35610  --------->ANAC46      <------- ------>AHL20(2)               <-----------GT1    <---------At4g35610  --------->ANAC58   ------>ZmHOX2a(1)   ttttatttaaagagtttttcgatatcgcatttttaacaacattacaatattcagcatcacgacggattcgcacacgaagaggtcgtcgtctccttataat  7063500                                                                                                   --                                                                                                  ---                                             <-----------------AG                                <---                                             <-----------------AGL2                              ----                                       --------->ANAC58                                          <---                                    <---------REM1(1)                                            ----                                  <---------MYB46(3)                                             ----                                 <---------AtMYB61                                               ----                                 <---------ANAC46                                                <---                                 --------->ALFIN1                                                <---                               --------->MYB55(2)                                               -----                               <---------MYB46(3)                                               =====                              --------->ALFIN1                                                  <----      -------->P              <---------AtMYB61 <----------DOF2                                 <---- <---------ZAT14          <---------At5g28300<-----------------AGL1                             ----- ---->ICU4               <---------DOF5.7(2) ----------------->AGL2                             <---- ---ICU4               --------->DOF5.7(2) --------->ANAC58                                     ----- -----YAB1            <----------DOF2  --------->ANAC58  --------->WOX13(1)    ----------->GT1  <---- -->YAB1    ---------->CDC5   <---------DEAR3(1)<---------DAG2   ==================================== --YAB1  --------->ANAC46--------->MYB52(1)--------->ANAC58      <----------DOF2                <----   gactaaactacccctcagcatgttctttaacggtggtggtgaagcaagccctttttggtcattcaagctttggctccaaattggtgactaggtttgccac  7063600                                ------->MYC2                                <-------MYC2                                ------->MYC3                                <-------MYC3                                <-------PIF5                                ------->PIF5                               <---------O2 ------->REM1(2)               <---------TGA1a ------>ALFIN1                 --------->TGA1a ----MYC2                      --------->ANAC55(2) --->MYC3                      --------->O2 ----MYC4                      =======================MYC_MYB --->MYC2                      --------->ANAC46 --->MYC4                    <---------DOF5.7(2) --->PIF5                   <-------TEIL ----PIF5                  <-----------HVH21                     --------->MYB46(3) ----MYC3                  --------->DOF5.7(2)                  <---------ATERF1(1) ---->O2                <-------TEIL                           --------->DEAR3(1) ==========================bZIP_DOF                          ------>NtERF2 ----ABF1              --------->ARR14(1)                   --------->ANAC46 -----O2               --------->CCA1(2)                    --------->ANAC58 ---->TGA1a           --------->ARR14(2)          <---------ANAC58   --------->AtMYB61 -----TGA1a           <---------ARR14(2)       ----------------------->TaNAC69(2) ---->ANAC55(2)       --------->ARR11(1)      <-------GAMYB --------->ANAC58   <----------DOF2 -----ANAC55(2)      --------->CCA1(2)       <-----------RAV1(1)------>NtERF2  <---------DAG2 =====bZIP_DOF  ---------->DOF2<---------bZIP60(2)<---------ANAC58<---------ALFIN1 -----ANAC46    =========================bZIP_DOF <---------ANAC46--------->AtMYB61<---------TOE2(3)   gtgttgacacttctagttgaaagagatacgttcacgtggcattgtctctgttgcctgttactacgccaccaccaaaacacactttaagttttttgttttt  7063700  Previous    Next  AGI:  At3g20250.1    Description:  APUM5 (ARABIDOPSIS PUMILIO 5); RNA binding. similar to APUM6 (ARABIDOPSIS PUMILIO 6), RNA binding [Arabidopsis thaliana] (TAIR:AT4G25880.1); similar to pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] (GB:AAF71823.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 7058908    to: 7063246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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