Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <-------GAMYB                       --------->MYB111(2)                       <---------MYB46(3)                                                         <--                       --------->MYB55(2)                                                      ------                      <--------P                                                            <--------           --------->ARR11(3)           --------->GLK1(2)                                 ===========           <---------ARR11(3)           <-----------ARR10      <----------DOF2            ------>ZmHOX2a(2)         <---------TOE2(3)              --------->ARR14(2)   <---------ATHB12           --------->AGP1         <---------TOE1(3)<---------REM1(1)                 ------>MYB83         --------->AHL20(2)   --------->ICU4   <---------MYB46(3)  <---------ARR14(2)  ------>MYB46(1)      <---------AHL20(2)   gcacaaagattaaggtcttgaatggttgttgaagccattccaaatctgaccaaagttagaccaatctttttttcttctaccatttaaactgatctacaca  6925900                               ---------->DOF2                                                    ---                    <---------ZAT18                                                   <----------DOF2                    --------->ZAT18                        --------->ZAT6             --------->TOE2(3) ----ZmHOX2a(1)     --------->ZAT14                        <-----------GT1      <----------DOF2   <-- --->ANAC46         <---------ZAT14           --------->ANAC55(2)       --------->AHL20(2)        --- -REM1(2)       <---------------AtSPL8        <---------ANAC55(2)       <---------AHL20(2)     <----- ====HOX2a_HOX2a--------------->AtSPL8   <---------ICU4 --------->RVE1(1)<---------AHL20(2)   -------   ggacgaatacaatgtagatgagtacacaaatcacaaagaacaactattacataccaaaatatcactatctatattttaatttcttttactttaaaattaa  6926000                                                 <---------ANAC46                                                 ----------->GT1                                               --------->ZAT14                                               <---------ZAT14                                              <---------REM1(1)                                            <------MYB83                                            <------MYB46(1)                                           --------->MYB111(2)                                           <---------AtMYB61                                           --------->MYB111(1)                                           <---------DEAR3(1)                                           <---------MYB46(3)                                          <--------P   <-----------GT1                                          <---------MYB55(1)        --------->AtLEC2                                        --------->ATHB12    --------->ANAC46 ------------>AtSPL3                   <---------AtMYB61 --------->ANAC46                   <-------- -------------AtSPL8                   <---------YAB1<----------TaMYB80---------->DOF2     <-------GAMYB ------------>AtSPL8         --------->YAB1--------->MYB46(2)    <xxxxxxxxxxxxxxxxsmallRNA(s) ----AHL20(2)             --------->TOE2(3)--------->MYB55(2)  <-----------GT1   <---------AHL20(2) -->AHL20(2)              --------->YAB1<---------MYB46(3)----------->RAV1(1)    --------->AHL20(2)   aacgtactccaatatagagtttagcataccataatatcggtatggttggtgtagtatataccacataaccattcaaagtctatataaattttcggttatg  6926100                                                              <---------YAB1                                                             <---------ARR11(3)                                                           --------->ICU4                                                           <---------YAB1                                                         --------->YAB1                                  ==========================HOX2a_HOX2a                          --------->ANAC58               <---------ICU4                          --------->ANAC58              <---------ATHB12                     <---------ZAT6           <---------ARR14(2)                   ----------->GT1<------ZmHOX2a(2)  ------>ZmHOX2a(1)                 <---------MYB52(1)           --------->KAN4(2)      --------->AHL20(2)---------->DOF2       --------->ARR14(2)                               <----- -MYB52(1)       <---------ARR14(2)         ------->TEIL--------->ICU4                  <---------ZAT6   taggggttttaaataggccgatagtgaaaagcatcgatcaaaaatgaatatactcctaatcatgatttttggattaacacatactacctagtgatgactt  6926200                                                                          <------MYB46(1)                                                                          <---------DEAR3(2)                                                                 <---------AHL20(1)                                                                 --------->AHL20(1)                                                               --------->AHL20(1)                                              ----------->GT1  <---------AHL20(1)                                        --------->ALFIN1   <---------AHL20(2)                                     <---------AtMYB61     <---------ICU4 <------MYB83                                     --------->DAG2       --------->AHL20(2)             <----------ID1                                --------->ANAC46        --------->YAB1   <---------DREB2C(2)                              --------->MYB52(1)       <---------YAB1    <---------DEAR3(1)        --                            <---------YAB1 <---------AtMYB61  --------->AHL20(2)     ---------->DOF2- -----DOF2        <------------CBF ---------->DOF2   --------->YAB1      <---------MYB46(3)        <-   ttggattaacacatactacctattgacattataaacggaaaggtggaggtgtaaatgataataaatatatattagtcggtgagtttagaaagaaacaaaa  6926300              *TSS       ----------->GT1       --------->ALFIN1                                    ---------->DOF2     <---------ANAC58                                   --------->At4g35610     <---------ANAC58                                   <---------At4g35610                       <--     <---------ANAC46                             <-----------ARR10                    <----------DOF2 ------->AHL20(2)                                 <---------ARR11(3)      --------->ANAC58     <----- --------->DOF2                                   --------->ARR11(3)      --------->ANAC58     <----- --------AHL20(2)       <-----------RAV1(1)       --------->GLK1(2)---------->DOF2  <-----------GT1   attaaaggggtgtgatttcgaagaaaatgttgcatagttttcaaaatttgaaaatctcagctaaagagagaaagagaagcaccatttttctttctcgtcg  6926400                                                                                                  ---                                                                                            ---------                           --------->YAB1                                               --------->GLK1(1)                           <---------ICU4                                               <---------GLK1(1)                          <---------YAB1                                               <---------GLK1(2)                          <---------ATHB12                                    --------->LBD16--------                          --------->ICU4                                     <---------LBD16<--------                        --------->YAB1                         <---------ALFIN1--------->LBD16  -----                   --------->LBD16                            --------->MYB46(3) <---------GLK1(2)<--                   ------>ZmHOX2a(1)                     --------->TOE2(3)  <---------LBD16<---------LBD16              <---------GLK1(2)                       <---------ALFIN1 <---------ALFIN1--------->ARR14(2) ---------HVH21--------->GLK1(2)                   --------->LBD16   ------>ZmHOX2a(1) <---------ARR14(2) ----ANAC58  <---------At4g35610               --------->ARR14(2)<---------ALFIN1--------->ARR14(2) ----ANAC58  --------->At4g35610               <---------ARR14(2)--------->ANAC46<---------ARR14(2)   tgtcatcgttttctcagattcctgaataatcattcccttccgattccaaaatccccaaacctcatccactcctccatctcccggattcggattcccagaa  6926500                                                                                                   <-                                                                                                   --                            --------->O2                                                           --                            ==================================MYC_MYB                          <-----                            --------->TGA1a        <----------CDC5                            -------                            <---------O2          --------->At4g35610                        --------                          <---------ALFIN1        <---------At4g35610                   <-------GAMYB                        <---------ALFIN1         --------->DEAR3(1)                    <---------MYB46(3) ------>YAB1           <---------ZAT18       ----------->HVH21                         <---------DEAR3(2) >HSFB2a(2)          --------->PCF2  --------->bZIP60(2)                <---------TOE2(3)    <------- ->LBD16            <-----------TCP11(1)<---------DEAR3(1)--------->ANAC58          ------------>AtMYB77 -HSFB2a(2)  <----------ID1 <---------TGA1a <-----------HVH21          --------->MYB52(1)   <-------- ---->GLK1(2)--------->ANAC58<-------MYC3   <-----------TGA1           <-----------GT1<---------DEAR3(1) -------ICU4 --------->ANAC58------->MYC3 <------NtERF2   --------->ANAC58        <---------WOX13(1)   tcatgcccatggagaacgacaatggcccacacgttggcaacgtcgtcgtcaccgctgagcaagcgaccaagattaacgagactgatggacggttgccgga  6926600                                                                                         <---------ANAC46                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                         <---------DEAR3(1)                                                                                        <------NtERF2                                                                                        --------->ATERF1(1)                                                                                       --------->ABI4(2)                                                                                       ------>NtERF2                                                                                      ----------->HVH21                                                                                      <---------ARR14(2)                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2                                                                                    <---------DEAR4(2)                                                                                    <---------MYB46(3)                                                                                    <---------ERF1                                                                                    <---------ATERF1(1)                                                                                    <---------RAP2.3(1)                                                                                    <---------ORA47(2)                                                                                    <---------DEAR3(2)                                                                                   <---------ANAC46                                                                                   <---------ANAC58                                                                                   <---------DEAR3(1)                                                                                   <---------ANAC58                                                                                  <---------ABI4(1)                                                                                --------->ALFIN1                                                                                ----------->HVH21<---                                                                                <---------DEAR3(1)     ----------->HVH21                                                   <-------GAMYB<---------DEAR3(1)   --------->At4g35610                                                   <---------At4g35610     ==== --------ARR14(2)                                                       <---------MYB46(3)     <----- ------->GLK1(2)                                                        --------->MYB52(2)   <------- ------->ARR14(2)                   <--------P                          --------->MYB55(2)--------->LBD16 -NtERF2                         --------->ALFIN1                     <------NtERF2<---------DREB2C(2) -->LBD16                 <---------LBD16                    <------MYB83--------->At4g35610--------- ->ETT(1)             <-----------HVH21<---------ANAC58      <------MYB46(1)  <-----------RAV1(1)==== --ANAC46            ----------->HVH21 <---------ANAC58    <--------P------------>AtMYB77<---------DREB2C(2) -LBD16     --------->ALFIN1--------->LBD16    <------ZmHOX2a(1)    <---------DEAR3(1)--------->ALFIN1   gaatcggcagaccggtgttgtctctgacaccggaagtggtagcgagagaggagagcaaggggttggagagtcggcagttgctgtggcggtgccggtggag  6926700                                                                                                    <                                        ------>ZmHOX2a(2)                                 ------>ZmHOX2a(2)                                       =============HOX2a_HOX2a                          <------ZmHOX2a(2)                                       <------ZmHOX2a(2)                                <---------ARR14(3)                                      <---------ARR14(2)                                <---------ARR11(1)                                      <-----------ARR10                                 --------->GLK1(2)       ------>ZmHOX2a(2)              --------->ARR14(2)                                --------->ARR14(3)      <------ZmHOX2a(2)       --------->ZAT2                                            <---------ARR11(3)     <---------ARR14(2)       --------->At4g35610           <---------MYB52(1)          --------->ARR11(3)     --------->ARR14(2)    ----------->RAV1(2)              --------->DOF5.7(2)         <---------AGP1 <---------At4g35610   <---------At4g35610                <---------ANAC58             <---------CCA1(2) ---ZmHOX2a(1)         --------->At4g35610   ------>ZmHOX2a(1)                         <---------ARR14(1) =============HOX2a_HOX2a -------->P  <---------ARR11(3)  <---------ANAC58            --------->LBD16 ----ANAC46      <---------MYB46(3)   --------->ARR11(3)  <---------ANAC46          <---------LBD16 < --MYB46(3)      --------->MYB55(2) --------->LBD16   <---------GLK1(1) --------->ANAC58<---------ARR14(2) >ALFIN1        --------->ALFIN1   --------->LBD16   <---------ZAT6     --------->ANAC46<-----------ARR10 ============HOX2a_HOX2a  --------->MYB52(1) <---------At4g35610        --------->ANAC58--------->ARR14(2)   gagagcggatcgatttcggtgggagagctacctgctccccgatcttcctctgctagagttccgtttactaatctaagccaaattgatgcggatcttgctc  6926800  Previous    Next  AGI:  At3g19910.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to BB (BIG BROTHER), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G63530.2); similar to BB (BIG BROTHER), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G63530.1); similar to Os09g0535100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063778.1); similar to hypothetical protein OsI_029129 [Oryza sativa (indica cultivar-group)] (GB:EAZ07897.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6926314    to: 6929573    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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