Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                         --------->HSFB2a(2)                                                                                       ----------->RAV1(2)                                                                                       <---------ZAT2                                                         --------->TOE1(3)             --------->ZAT2                                                         --------->YAB1               -------->P                                                 --------->MYB52(1)                   ------>MYB46(1)                                              --------->AtMYB61                       ------>MYB83                                              --------->YAB1                         <---------ALFIN1                                            ----------->RAV1(1)                     <---------MYB59                                           <---------ALFIN1                         --------->MYB46(3)                                         ------>ZmHOX2a(1)                        --------->PCF2                                     --------->GLK1(2)   --------->TOE2(3)      ----------->HVH21                                     <---------ARR14(2)<---------ARR11(3)     --------->At4g35610   --------->AtLEC2                  --------->ARR14(2)--------->GLK1(2)      ----------->RAV1(2) ----->DOF2                         <---------GLK1(2) <---------GLK1(2)       <---------At4g35610   gagcaatgcaaaatggacacatttgagacatctatcgagattcctccaccataacagaatcttaaaaccaagtcgaacccatctgacccacctggaaaat  6900900            --------->ICU4          --------->YAB1    --------->TOE2(3)                                                                            ---- --->ARR14(2)                                                        ------>ZmHOX2a(1)       ======== --->GLK1(2)<---------YAB1                                           ===============================HOX2a_HOX2a --->ARR11(3)                                                       --------->TOE2(3)        <------ZmHOX2a(2) ----ARR11(3)                                                  --------->At4g35610  --------->ZAT14 ----ARR14(2)                                                --------->YAB1         <---------ZAT14 ----ARR14(3)                <---------YAB1 <---------YAB1 <-----------GT1          --------->ZAT18 --->ARR14(3)     <-----------GT1  <----------DOF2        <-----------GT1         --------->ZAT14<---   cttcaacctcgatgatgattctactgttcttgtgattctttttcttcttattgctctgttttatcatcttcctcaagaagcctgagtactctgagatcaa  6901000        --------->ANAC58        --------->ANAC46                                                               ----------->GT1        --------->ANAC58                                                       --------->CCA1(2) <---   >>>>>>>>>MYB98                                                        --------->ALFIN1       ----- ------>ZmHOX2a(1)                                                     <---------ZAT6  <------MYB46(1) ----->ARR14(2)                                           <---------TOE2(3)   <---------ARR14(2)<---- =======HOX2a_HOX2a                                       <---------TOE1(3) ----------->ARR10 <------ ------ARR14(2)             <---------AHL20(2)     <------ZmHOX2a(1)   <---------ANAC46<------MYB83--   atcctaacccaagaaacagagaaacagagtttaattcagaaaatggaaacagaggaagttagggtttgaattagtgtggagatttgatttggtttattac  6901100              --------->AHL20(2)    <---------TOE2(3)                      <------ZmHOX2a(2) <---------WOX13(1)                       <-----------ARR10 ------MYB59----------->GT1               --------->ARR11(3) ---->ANAC55(2)                  --------->ATHB12                                            ------->TEIL -----ANAC55(2)                <---------WOX13(1)                                 <------MYB83 -----GT1 ---------->DOF2   <---------YAB1<---------ARR11(3)                      <------MYB46(1) ------->ATHB12             <---------TOE2(3)     ---------->DOF2       <----------DOF2--------->ICU4   ctgattgacgaagaaagtaaattggttattgagattgatttgaagatcacagcaaagagacattgtatcaacttcttttgcatttggtgaagatgaaact  6901200                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)          <---------ANAC58                                   *TSS                        <---------CCA1(2)          <---------ANAC58                                <--------ATHB1             <---------AHL20(2)       <----------DOF2                                    --------->YAB1             --------->AHL20(2)     --------->At4g35610                                 <---------ATHB51            <-----------TBP     <---------At4g35610                                 --------->ICU4            <-----------TBP   <---------ZAT18         <----------DOF2               <---------ATHB12  --------->MYB52(1)  <-----   tcttgtgagctttcttgttcttgttcttccttttggattggagagagagagagagagcaataatagttatcacatggaaacggctatttatatatctctt  6901300                                          --------->YAB1                                         <---------YAB1                                      --------       <----------DOF2                  <-----------GT1                                     <--------     <------NtERF2                     --------->YAB1       --------->AHL20(2)              <--------    ------>NtERF2           <---------ZAT18    <----------DOF2<---------AHL20(2)           --------->ANAC58  ---------->ID1  --------->AHL20(2)<----------DOF2         <---------AHL20(2)             --------->ANAC46 <---------RAP2.3(1)        --------->ZAT18   --------->TOE2(3)         ---------->DOF2    --------->ANAC58 -----DOF2   ------------>CBF   <----------DOF2------>ZmHOX2a(1)    --------->AtLEC2      <----------   tttcggcgtctttatttcaattatctaatgtacactttcttttatcatcctttataactcatataaatttatgcaaaaggaacttatatacaaacgtcat  6901400                                                                                        <---------MYB52(1)                                                                                      <---------ANAC58                                                                            --------->ATHB51                                                                            <---------AHL20(2)                                                                            <---------ICU4                             -------->P                                     <--------ATHB1                             ------>MYB46(1)  --------->REM1(2)             --------->AHL20(2)      -     ----------->GT1         ------>MYB83    --------->ALFIN1              --------->ICU4           < ->TGA2(2)          <---------ANAC46  --------->TOE2(3)                    <---------ATHB51    ------ ---HVH21           <---------AtLEC2 --------->ZAT6                   ----------->GT1 <---------ANAC46 ---TGA1        <-----------HVH21  <-----------GT1              <---------ZAT6        <---------ANAC58 -STF1     <-----------GT1 <---------MYB59 <---------ANAC46   ----------->GT1   <-----------RAV1(1) -   cgaaaaattgtataaactggtcgcatggaccaacttgtaaccctagtgtgtagaccatctaaaatagtgaaaatgtaataatttgttgccgtttgtaatg  6901500             <---------MYB52(1)            <-------GAMYB      <---------YAB1    --------->ATHB51    -------->ATHB1    <---------ICU4    --------->ATHB12   <---------ATHB51   <---------AHL20(2)   <---------YAB1   --------->AHL20(1)                                                             <---------AHL20(2)   --------->ICU4                                       <----------DOF2          --------->AHL20(2) -------->AHL20(2)                                     <---------ANAC58          <---------AHL20(2) ---------AHL20(2)                                     <---------ANAC58      --------->ARR11(3)    <- ----->GT1 --------->MYB52(2)                     --------->ATHB12           <---------ARR11(3)    <- -------->ICU4                                   <-------TEIL--------->YAB1 --------->YAB1   --------   aaaaaattattgttcgttattgtttagtttttttggtattagataataagattcattgcttaatcgaaatgtactatatgatattaattttggagcaatt  6901600                                                                                   <---------WOX13(1)                                                                                 --------->ATHB12                                                                                --------->ICU4       <-------TEIL                                                     <-----------GT1      --------->AtLEC2                                                <---------AHL20(2)  <---------AtLEC2 --------ANAC58           --------->TOE2(3)                    ----------->GT1  --------->AHL20(2) --------ANAC58      <----------DOF2                          --------->DAG2    <---------AHL20(2) ->WOX13(1)    <-----------GT1      --------->TOE2(3)        ---------->DOF2  <----------DOF2   <----   agcttgacatgcatagtttacttctttacattagaaaaccttttttctaacatcgaacttaagaaaagttatataaactgcattaattgactgcatgttt  6901700                            <---------ZAT18                            <---------ZAT14                            --------->ZAT14                       --------->ZAT18                       <---------ZAT14           <---------ANAC46                    --------->ATHB12                       <---------At4g35610       <---------ANAC58               <-------TEIL                    <---------ANAC58             <---------ANAC58             <-------PIF5                    <---------ANAC58        <---------O2--------->MYB52(2)    ------->PIF5     ------                    <---------ANAC46     ----------->TGA1<-------GAMYB       --------->At4g35610            <---------AHL20(2)           ----------->HVH21 <---------MYB46(3)--------->ZAT2   -------    <---------GLK1(1)  --------->At4g35610  <---------bZIP60(2)      --------->YAB1 --------->ICU4    --------->GLK1(1)  --------->ZAT14 <---------ICU4 <---------MYB52(1)   <-----------RAV1(2)------- -----AHL20(2)--------->ARR11(3)   <---------ATHB12 <---------MYB46(3)  <-----------GT1<---------WOX13(1)   attttgaaatccatataatcttgtgtgcagagcacaaatcaatatgacgaggcgttgttagttgttactaaaaataaccaggtgcaaagattgattcctt  6901800  Previous    Next  AGI:  At3g19850.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G50280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15402.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 6898187    to: 6901261    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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