Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->YAB1                                   --------->TOE2(3)                                               --                                 <---------ARR11(3)                                               ---                            <---------ZAT18                                                    ------                            --------->ZAT14                                                  <-------                            <---------ZAT14                                                  ========                            --------->ZAT18                             =============================                        <---------ICU4                                  <----------DOF2      <-------                        --------->ATHB12                              ===============================                        --------->ATHB51                              <----------DOF2        <-------                       <---------AHL20(2)                         <---------ZAT18            --------         <---------ZAT18-------->ATHB1                            <---------RAP2.3(3)        --------  <---------YAB1       <---------ATHB51                        <-----------RAV1(1)           <------- ----->DAG2            --------->ICU4 --------->MYB52(1)<---------TOE2(3)                    <------- ----->DOF2            --------->AHL20(2)           <----------DOF2 <---------PCF2 --------->TOE2(3)   aagtattgttgagcgcttctgtcaaattattgcactatcttaacggtgtatttcctttgatgtttctgtgggctcttttgaacaaacttaaactcgcgtg  6866400 ------->At5g28300 -------->GT1 --->ALFIN1                                                  <---------ARR14(2)                   <-- --ANAC58                                                    --------->ARR14(2)                 <---- ====================================bZIP_DOF             <---------ANAC58                      <---- ==bZIP_DOF                                               <---------ANAC58              --------->ATHB12 --ANAC58                                          <------MYB46(1)--------->ANAC46     <---------YAB1 ==bZIP_DOF                  --------->MYB59       <------MYB83  ------>ZmHOX2a(1)------>NtERF2 <---- --ANAC46                    <---------TOE2(3)    <---------AtMYB61              <---------RAP2.3(3) ->O2                        <---------TOE1(3)   <---------MYB55(1)           <-----------RAV1(1) --- ->TGA1a      <---------ANAC58      <---------TOE1(3)    ---------->ID1   <---------GLK1(2)  <------- --O2         <---------ANAC58      <---------TOE2(3)   <-----------GT1<---------WOX13(1)>>>>>>>>>ARR2 --TGA1a<---------AHL20(2)<----------DOF2       <---------MYB52(1)--------->TOE1(1)  <----------DOF2   tggtaaatgtttaatgacttgagaagcgatttaggtttagggtttggaccgtttggtttttcgtttcctcgtaattgattctgggggctttgattgtggt  6866500                                                                                          --------->ATHB12                                                                                          <---------ICU4   <---------PCF2                                                                        <---------YAB1 -------MYB46(3)                                <---------At4g35610            ---------->DOF2 -----ANAC58                                    <-------GAMYB               <---------ANAC58 -----ANAC58                                    --------->At4g35610         <---------ANAC46 -----ANAC46                               ----------->HVH21         --------->TOE2(3)   <------ZmHOX2a(2) ------>MYB52(2)                           --------->ETT(2)<-------TEIL     <---------ANAC58 --TOE2(3)           --------->ZAT6 <----------DOF2     ----------->GT1     <---------ANAC55(2)   ttgtgggtcaaaactctcaactatcactacttgtaagacttttgctcgacagttgaaacggttcattgttatcttatttcgtaaagcttggatcattgca  6866600                                                                                           --------->ANAC55(2)                                                                                           <---------ANAC55(2)                                                                   <---------ANAC58        ==========                   ---------->DOF2               <---------bZIP60(2)                       ==========                --------->ANAC58                 <---------bZIP60(1)  <---------TOE1(2)    <---------TGA1a                --------->ANAC58                 <---------O2      <---------ANAC58        --------->At4g35610              ---------->DOF2                    --------->O2      <---------ANAC46        --------->O2      --------->YAB1                             --------->bZIP60(1) <---------ANAC46      <---------At4g35610      --------->ATHB12                           <---------ANAC46<---------ARR14(2)        <---------O2      <--------HAHB4                           <---------TGA2(2) --------->ARR14(2)      <-----------RAV1(2)      <---------ICU4                          ----------->HVH21 <---------CCA1(2)      <-----------HVH21     <---------ATHB12--------->ANAC58         ----------->TGA1<---------ANAC58    <---------LBD16   --------->WOX13(1)--------->ANAC58<-----------GT1          <---------ANAC58  ----------->HVH21 ---   aaaatcaatcatttgcaaaagcaaagcaagttgatgaaattactggacatgacgtcgaggtttttcgtatcgtgtgtttcatttgacggagtcaggtgtc  6866700                    ----------->GT1                    <---------ANAC58                    <------MYB46(1)                    <------MYB83                    <---------ANAC58                    <---------ANAC46                   <------MYB83                 <<<<<<<<<MYB98                <---------ANAC58           --------->ATHB12          <---------MYB46(3)         <---------WOX13(1)         <--------P--------->MYB55(2)        <-------GAMYB        <---------ANAC58        <---------ANAC58       <------MYB46(1)       <------MYB83<---------MYB46(3)       --------->MYB52(2)       <---------MYB46(3)       --------->MYB55(2)      <---------AtMYB61      <---------TOE2(2)      <---------TOE1(2)                          --------->LBD16     <---------MYB52(1)                        <---------LBD16                                      -    <-------GAMYB<--------P                  <---------ARR14(2)                                    <-   --------->MYB52(2)                        --------->ARR14(2)                                   ---   <---------MYB46(3)              --------->ANAC46     <------ZmHOX2a(1)                       <---- ===========MYC_MYB<------MYB46(1) --------->ANAC58   --------->MYB59 <-----------GT1           ----- =================MYC_MYB <------------CBF  ---------->DOF2<---------MYB59                  --------- --->ZmHOX2a(1) <---------ANAC58   --------->ANAC58 <--------P       <-------TEIL         <------ZmHOX2a(1)   ctcgctcgttggttgatgggttgggtgaaattgatgaacgaaacccaaaaccgggttaggaccgaattagattcactaacttaacaacaccaggaccaat  6866800                                                            --------->GLK1(1)                                                        <---------ANAC55(2)                                                        --------->ANAC55(2)                                                        --------->ANAC58           --------->AHL20(2)                           --------->ANAC58           <---------AHL20(2)                           --------->ANAC55(1)                         -   --------->ARR14(2)                                   --------->ANAC46                            <   <---------ARR14(2)                                  <---------LBD16                           <--- --------->LBD16                                    ----------->RAV1(1)                        <----- -------->ANAC46                                   ----------->HVH21                         <------- --------LBD16                                    <------NtERF2                            <---------ATHB12 ------>MYB52(1)                                  --------->At4g35610                    --------->WOX13(1) -----ATHB12*TSS  --------->MYB46(3)              <---------At4g35610   <-----------GT1 <---------WRKY38(1) ---->MYB46(3)<---------AHL20(2)                <---------WRKY38(1)<-----------GT1     --------->WRKY18(1) --->CBF  --------->AHL20(2)          --------->ATHB12<---------ALFIN1<----------DOF2 <-----------HVH21   aaccggaacttaataaataaacgaccgtggttttgtttgtttattggtagtcagcgacacggaactcattaactttactcttctcactggtcaatcgtcg  6866900                                                                                    <---------ATERF1(1)                                                                                   --------->RAP2.3(2)                                                                                   <---------ATERF1(2)                                                                                   --------->DEAR3(1)                                                                                   <---------DEAR3(1)                                                                                   --------->ATERF1(2)                                                                                  <---------LBD16                                                                                  --------->ORA47(2)                                                                                  --------->ATERF1(1)                                                                                  --------->ERF1                                                          --------->HSFB2a(2)     --------->RAP2.3(1)                                                          ------>ZmHOX2a(1)      <---------ATERF1(1)                                                          --------->LBD16        --------->LBD16                                                         <---------LBD16        --------->ANAC46                                                        ----------->RAV1(2)     --------->DEAR3(1)                                                        <---------ANAC46       --------->SPL7         ----------->HVH21      --------->TGA1a      <---------GLK1(1)        <---------ATERF1(1)   --------->GLK1(2)     <---------ARR14(2)          --------->GLK1(1)--------->LBD16 -------->ARR11(3)       --------->ARR14(2)        --------->ATHB12  --------->ANAC58        -------- ---------ARR11(3)       --------->GLK1(2)      <---------AtLEC2     --------->ANAC58<------NtERF2 ---NtERF2      <---------DEAR3(1)          <---------At4g35610   --------->ARR14(2)--------->LBD16 ----DEAR3(1)<---------DEAR3(1) <---------TGA1a<------NtERF2  <---------At4g35610------>NtERF2 ----HVH21   ------>ZmHOX2a(2) ------->TEIL --------->At4g35610   <---------ARR14(2)------>NtERF2   -   gagataatcgggtgatcggcgatggagaatacggacgtcttcttggggctgcatgatttcctggagcggatgcgcaaaccctccgccggcgatttcgtca  6867000                                            --------->GLK1(1)                                            <---------GLK1(1)                                           <---------ARR14(2)                                           --------->ARR14(2)                                       <---------LBD16                                       ------>ZmHOX2a(2)                                      --------->ARR14(1)                                      --------->CCA1(2)                    ------>ZmHOX2a(1)                                      <------ZmHOX2a(2)               ------>ZmHOX2a(2)                                     --------->ARR14(2)              =============HOX2a_HOX2a                                     --------->ARR11(3)              <------ZmHOX2a(2)                                     <---------ARR14(2)             --------->ARR14(2)                   <-----------GT1   --------->AGP1                 --------->ARR11(3)                <---------CCA1(2)   <---------At4g35610             <---------ARR11(3)      ---------->DOF2               <---------GLK1(1)               <---------ARR14(2) ->TOE2(3) --------->PCF2          ----------->ARR10            <-----------GT1 --------->At4g35610 ---------------->AGL3    <----------DOF2--------->LBD16     --------------->AtSPL8  <---------ANAC46   aatccattaaaaggtcccatttctccctcttttgatgcagatccggatatatgtgtgtgtttctatgtacgatcttcctcttagcttaagtggatgtgct  6867100                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                     --------->AHL20(2)                                       --------->YAB1                             <--------HAHB4                                      <---------YAB1                      --------->GLK1(1)                                    --------->YAB1               --------->ATHB12 --------->ATHB12                                   --------->ICU4               --------->ICU4    <---------ICU4          --------->ANAC55(2) <-------GAMYB               <-------TEIL <---------TOE2(3)    <--------         <---------TOE2(3)    <---------At4g35610         --------------->AtSPL3 <---------ATHB12      <----------DOF2<-------TEIL  <---------YAB1         <---------------AtSPL3 --------->ICU4   tcttagcggtttacgtttttaagtccattttcagttgatgatgatactatttgagcaaaattcgtactgatttgagatttctaatcatttatttatgctt  6867200                                          <---------ANAC46  --------->ATHB51                                          ----------->GT1   --------->ATHB12                                 ----------->GT1            -------->ATHB1                               ------>ZmHOX2a(2)           <---------AHL20(2)                             --------->ARR11(3)            --------->ICU4                             <---------ARR11(3)            <---------YAB1              <---------LBD16--------->ARR14(2)            <---------ATHB51         <---------MYB52(1)  <---------ARR14(2)          XXXXXXXXXXXXXXXXXXXX>MIR4243        <-------GAMYB        <---------AGP1          --------->YAB1 -YAB1<-----------------AGL2<---------CCA1(2)  --------->YAB1   --------->ATHB12   cttcaattgctgttactggggaagacaattggatcttgttaatagggtataacaattagaaattattgatttcatactggaatggtttgtttattgagca  6867300  Previous    Next  AGI:  At3g19760.1    Description:  eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 2 (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G51380.1); similar to Eukaryotic initiation factor 4A-3 (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) (GB:P41380); similar to unnamed protein product [Vitis vinifera] (GB:CAO48730.1); similar to DH [Medicago sativa] (GB:ABL07003.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); con Range:  from: 6863719    to: 6866599    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g19770.1    Description:  ATVPS9A (ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A). similar to vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61792.1); contains InterPro domain Vacuolar sorting protein 9, subgroup (InterPro:IPR013995); contains InterPro domain Vacuolar sorting protein 9 (InterPro:IPR003123) Range:  from: 6866812    to: 6869481    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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