Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ------>ZmHOX2a(1)                                                           --------->GLK1(2)                                                          --------->YAB1                                                         <---------ATHB12       <---------ANAC58                                                     <------ZmHOX2a(2)          <---------ANAC58    --------------->AtSPL8                           =======================HOX2a_HOX2a <------NtERF2                                      <---------ARR11(3)   <---------TOE2(3) --------DEAR3(1)                    ---------->DOF2--------->ARR11(3)  <-----------GT1 -->DOF2                         <----------ID1    --------->GLK1(1) <----------DOF2          <------   gtcgtcgtagtactatatatgtctaatcgcctatggagccaaaggaaacaaggagatcaataatctgtgtcctttaacattttcttgcatcatctccttt  6793300                                                             <---------ICU4                                                             --------->YAB1                                                   --------->YAB1                           <----------DOF2         <--------ATHB1                        <-----------GT1           <---------ATHB51                                  -                    <----------DOF2               <---------YAB1                                    <                  ---------->ID1         <----------DOF2    <---------ATHB12                        -                 <-----------GT1         ------>ZmHOX2a(1)--------->WOX13(1)          ---------->DOF2 ----DOF2    <---------MYB52(1) <---------YAB1  --------->YAB1 <---------YAB1     ---------->DOF2   <   tcattcacttactctgttttttcttttttcttttgtcattgtcctttgaacaataatagtcaatcatgttaagagatttagttagaaagaaagtagtagc  6793400               --------->AHL20(1)               <---------AHL20(1)               <---------AHL20(2)               --------->AHL20(2)              --------->AHL20(2)       <---------HSFB2a(2)       --------->HSFB2a(2)      <-----------HVH21     <---------At4g35610    <---------TOE1(2)     --------->At4g35610    <---------TOE2(2) -------->ZAT14--------->ARR11(3) ---------ARR14(2)         ------>ZmHOX2a(1)                                                       <- -------->ARR14(2)  <-----------GT1           ------------>CBF      <------ZmHOX2a(1)              <- ---------ZAT14<---------ARR11(3)    <---------TOE2(3)  <---------ZAT6     ---------->DOF2         <-   agtatactgctggaaaatatattaacctcctaggtgttagaggttttgaacaatataagtgttagaactaggaatgaaaaagaaacacaacttgttgatg  6793500           <-----------------AGL1                                                      ---------->DOF2      <-------GAMYB                                                                 <------NtERF2      <---------ANAC58                                                              --------->At5g28300      --------->ATERF1(1)                                                     --------->SPL7      <---------ANAC58                                --------->YAB1        <---------SPL7     <---------MYB46(3)                          ------------>CBF          <---------ANAC58 --------ANAC58            --------->GLK1(1) <---------REM1(1)             <---------ANAC46 --------AtLEC2   <---------HSFB2a(2)      <------------CBF       <----------DOF2 <---------ANAC46 --------ANAC58   --------->HSFB2a(2)    <---------YAB1    <-----------GT1 <---------ANAC58   tgcttggcgcttgctctgttttggaaatgaattccatttgactaatattgtagcaatagtatttccttcttttttttgcgtatggcggtaaaagtttttt  6793600                                     <---------AHL20(2)                                    --------->AHL20(1)                                    <---------AHL20(1)                        <---------MYB52(1)        --------->ZAT18                      <---------ANAC55(2)        --------->ALFIN1                                   <                     <---------At5g28300 --------->YAB1                                   --------->ANAC58        --------->At5g28300         <---------ARR11(3)                           <---------AHL20(2)--       <---------DEAR3(2)     <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ANAC58       ----------->GT1<---------TOE2(3)<-----------TBP  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <--     --------->DDF1 <-----------GT1----------->TBP<---------ZAT18                --------->AHL20(2)<-   <-----------RAV1(1)--------->ANAC55(2)<---------AHL20(2)  ---------->DOF2    <---------AHL20(2)---   tttttatgtcggtaaaatttagttacggtatttttctatatatttataagagtgggcaagggtgaaagttagaagtccctaatttatatcacaagcttgt  6793700                                                                    --------->GLK1(2)                                                                   <---------GLK1(2)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 ----------->ARR10                                                     --------->ARR14(2)                             <                                                     <---------ARR14(2)         xxxxxxxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxx        --------->TOE1(3)                           <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->TOE2(3)                  --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-----------GT1                       <---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-  --------->YAB1                          --------->GLK1(1)     <------ZmHOX2a(1)               <xxxx ---------MYB52(1)                        <---------GLK1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->TOE2(3)                          <---------CCA1(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------MYB46(3)                         <---------MYB52(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)- ------GAMYB                     --------->YAB1   <---------TOE2(2)<---------ARR14(2)     --------->ARR11(3) ------>MYB52(2)                <---------YAB1    <---------TOE1(2)--------->ARR14(2)     <---------ARR11(3)   tcgttaataaccctaattctctatgtgtatgactatgatgtccgatatctcgcaggatttgttagaggagattctctctagggttccaataacatctctg  6793800            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->GLK1(1)                                                                          <--  ----------->GT1                                                                                 --- ---------ZAT14                              ------>ZmHOX2a(2)                                   ---- xx>smallRNA(si3)                       <---------WOX13(1)                 --------->ANAC46      <--- xxxxxxxxxxxxx>smallRNA(i)    ======================HOX2a_HOX2a  <---------AtMYB61      --------->GLK1(2) -------->ZAT14    <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) - xxxxxxxxxxxxsmallRNA(i)      <------ZmHOX2a(1)         ---------->DOF2 <---------WRKY12<---------ARR14(2) -------->ZAT18--------->AtLEC2   --------->ATHB12 <----------DOF2   <---------MYB46(3) --------->ARR14(2)   agagcagtgaaatctacttgcaaacgatggaaggatttattgaatgatccgagcttttcaaagaagtatggtggtaaacgagacaacgagtttctggcga  6793900                                                                                   --------->DAG2                                                                                  ---------->DOF2                                                                               --------->YAB1                                                                            ------>ZmHOX2a(1)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)          <---------------AtSPL3                                        --------->ARR14(3)       <---------AtMYB61                                                <---------ARR14(3)       <---------ZAT6                                                   --------->ARR11(3)       --------->ALFIN1                                                 <---------ARR11(3)   <---------ANAC46                                        ---------->DOF2  <----------DOF2 -------ICU4                                      --------->O2         <---------HSFB2a(1) ------>YAB1                       <---------CCA1(2)----------->HVH21  --------->HSFB2a(1) ----->ICU4                    ----------->GT1    <---------O2        ----------->ARR10 ---ZmHOX2a(2)        --------->TOE2(3)       ------->TEIL --------->YAB1 ------>ZmHOX2a(2) ---------->TGA1      <----------DOF2    <---------AtLEC2  <---------ICU4<------ZmHOX2a(2)   tcatgacgagtggtagtagggcttctttaatgagcgtaaatctccatggacctcgtgacaataaagacttggaagatccttttataaagcaaataggtga  6794000                                                                                               <-----                                                                                               ------              <---------RVE1(1)                                                             <--------              <---------CCA1(1)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------ARR11(3)                                      --------->ZAT6         ---------             --------->ARR11(3)                                 <------ZmHOX2a(1) <---------SPL7             --------->ARR14(2)                                ----------->GT1 <-------PIF5<---------             <---------ARR14(2)                               <---------TOE2(3)------->PIF5<---------    <---------ICU4               <---------YAB1              --------->YAB1    ----------------------    --------->YAB1<---------AHL20(2) ----------->GT1        <---------ATHB12 <-------TEIL  <---------   <---------ATHB12---------->DOF2  <---------AtMYB61    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------   acttaatcaagaccagatatttaaagtgtttcattgtgatggtttattgttatgcatcaccaatgaggataatactaggctcgtggtatggaacccgtat  6794100                      --------->MYB46(3)          --------->At4g35610          --------->ZAT2 ----ARR14(2)       ------>MYB46(1)                                             <----------ID1 --->ARR14(2)       ------>MYB83                                        <------ZmHOX2a(1) -ANAC55(2)<-------PIF5                                --------->ATHB12<----------ID1 >ANAC55(2)------->PIF5                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------AGL3       -------->P                   <------MYB46(1)      --------->ANAC58 --------AGL2       --------->ANAC46             <------MYB83         --------->ANAC58 ->TaNAC69(2)    --------->MYB46(3)            <---------WOX13(1)--------->ANAC58                   - --------AGL1<-------TEIL <---------ETT(2)   --------->ATHB12    ----------->HVH21             <----- ->LBD16<-----------RAV1(2)                 <---------YAB1       --------->ANAC58--------->TOE2(3) <-   ttggcacaaaccaggtgcatccaacccatcgacaaattctacatatatgattggtattgtttgggctacgacaaggacaaaaaccacaaaattttagtgg  6794200  Previous    Next  AGI:  At3g19560.1    Description:  F-box family protein. Identical to Putative F-box protein At3g19560 [Arabidopsis Thaliana] (GB:Q9LJP0); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80717.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6793738    to: 6794808    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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