Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->LBD16                                                                                  --------->At4g35610                                                                                  <---------At4g35610                <---------At4g35610                                       ---------->DOF2                --------->At4g35610                                      <---------WRKY45  ---------- >At4g35610 <-----------HVH21 --------->At4g35610                   --------->ARR14(2)    --------->DAG2 -->GT1 <---------MYB52(1)    <---------At4g35610                   <---------ARR14(2)   ---------->DOF2 -At4g35610<------MYB46(1) <---------At5g28300                     <------ZmHOX2a(1)----------->GT1 -RAV1(2)  <------MYB83<---------ICU4    <------ZmHOX2a(1) <---------------AGL15  <---------LBD16 ---   aaaacagtccatttggtcaccagactaattacagctacaagaaggagccattactgtaatgctacaagaggatagtcaaagagcagcggaaaaaagtgaa  6749100             <---------ANAC58        <---------ARR11(3)        --------->ARR11(3)        <---------GLK1(2)        --------->ARR14(2)    <---------ZAT14    --------->ZAT14                                                                    --------->GLK1(2)  <---------ZAT14                                       <---------ANAC58               --------->ARR14(2)  --------->ZAT14      <----------DOF2                  <---------ANAC58        --------->YAB1 ->GT1  <---------ARR14(2)                              <---------ANAC46       <-------TEIL ------>YAB1 <---------ANAC58             <------ZmHOX2a(1)     <-----------RAV1(1)    <---------ARR14(2)   tcacagtacagattttcgttcatttctttctgtttcgcttactaggagttttcttcttgtgtgtttttgttgtgttcaagattcatgagtttctggtttt  6749200                                                                                              <------                                                                                              -------                                                                                              <------                                                                                           <--------HAHB4                                                                                           <---------ICU4                                                                                           --------->ATHB51                                                                                           <--------ATHB1                                                                                           --------->YAB1                         <-----------RAV1(1)                                              --------->ICU4                --------->ANAC46                                                          --------->AHL20(2)                --------->ANAC58                      ---------->DOF2                     <---------ATHB12                --------->ANAC58         <---------HSFB2a(2)                              <---------ATHB51    <----------DOF2    <----------DOF2   --------->HSFB2a(2)  ------->TEIL      ----------->GT1<-----   tttggtcttttagtttacacgaatgctttgttgcagtattgttccagtagaaacgagaaagatgaatctaatacaacttgagaggttattcaataattaa  6749300           <---------TOE2(3)          ---------->DOF2        <---------YAB1      <---------ICU4     <---------YAB1     --------->ICU4 ---AHL20(1)                      ------->GAMYB -->AHL20(2)           <---------At5g28300  ----------->GT1                                      <--- ---AHL20(2)--------->ICU4        --------->AtMYB61                   <---------CCA1(2)    --------->ARR14(2) ----AHL20(2)<---------ICU4      --------->MYB46(3)     ------->TEIL<---------CCA1(2)      <---------ARR14(2)   tttgttgattattaaagattacagttacagtttcaaccaaaacaaaatgtgatatatgtgcctagtcgtcttatctctctctcgttcacattggataggc  6749400                                                                                      --------->LBD16                                                                               <---------YAB1       -                                                                             <---------ANAC58     <--                                                                             <---------ANAC58     ---                                                                           <-------GAMYB       <-----                                                                          <---------DEAR3(2)  <------                         --------->ZAT14                                 <---------At1g77200 --------                  <----------DOF2                      <---------ANAC58  <---------DREB2C(2)<--------              --------->ZAT18         <------------CBF <---------ANAC58<-----------HVH21  ===========         ---------->DOF2 <---------ZAT18            <------------------------ANAC81   ===============     <----------DOF2     <---------ZAT14     <----------DOF2          <-----------RAV1(1) <------ZmHOX2a(1) -------DOF2  <---------ZAT18    ------->TEIL<---------DAG2      <---------MYB46(3)   ------>ZmHOX2a(1)   ttttgggcttttaaagtccactttcagtgaacatggacccgattgagctttatgggttcttgtttgtttgttctgtcggtcgtgattcctgaggataatt  6749500                                                                                           ------>NtERF2                                                                                           <---------RAP2.6(3)                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                  <-----------HVH21                                                                                  --------->LBD16                                                                                  --------->At5g28300                                                                                 <---------ANAC55(2)                                                                                 <---------bZIP60(1)                                                                                 --------->bZIP60(1)                                                                                 --------->TGA1a                                                                                 <---------ANAC46 <----------DOF2                                                                 <---------bZIP60(2) ----->ZmHOX2a(2)                                                                --------->ANAC55(2) -------ARR11(3)                                                                 <---------ANAC55(1) ------>ARR11(3)                 --------->GLK1(1)                               <---------ANAC58 ----WOX13(1)                   --------->ARR14(2)                               <---------TGA1a ------CBF                      <---------ARR14(2)                               <---------ANAC58 ->ATHB12         --------->TOE2(3)                               --------->TOE2(3)----------->HVH21 -YAB1   <----------DOF2      *TSS                             --------->ARR14(2)<---------O2 ======HOX2a_HOX2a--------->TOE2(2) <------------------------ANAC81------>ZmHOX2a(1)      <---------ANAC58 ======HOX2a_HOX2a<---------MYB59<---------GLK1(1)             <---------ARR14(2)--------->O2   gatcttttcttctttgttaacctaagttatttgggatttgctcttgttttgttctgtcttaatcgaatcctcaagggattgtgccgtgactgccgtcttc  6749600                                                                   --------->ZAT18                                                                   <-------TEIL                                                                   <---------ZAT14                                                                   --------->ZAT14                                                                   <---------ZAT18                                                               --------->DAG2                             --------->GLK1(2)             --------->YAB1                            <---------GLK1(1)           --------->YAB1                            --------->GLK1(1)    <------ZmHOX2a(1)--------->ALFIN1<----------DOF2                       <------NtERF2            ----------->GT1<---------------AtSPL8 ---------->ID1   aattgttttatatatatcgagaggccgaagaaatctgtaatcacagacagaggaaaaataagaataaggtgcagtttttttgttctttgttgttatttaa  6749700                                                                                                   <-                                                                                                   --                   <---------ETT(1)                                 --------->ARR11(3)            <--                   --------->ANAC46                                 <---------------AtSPL8     <-----       --------->TOE2(3)                                            --------------->AtSPL3    -------      ----------->GT1                                     <---------ICU4                --------->CCA1(2)     <---------TOE1(3)                            ------>ZmHOX2a(1) --------------->AtSPL8  <--------     <---------TOE2(3)              <---------ANAC58 <--------P     <---------ARR11(3) <---------ARR14(2)    --------->MYB52(1)              <---------ANAC58 <---------WOX13(1)                --------->ARR14(2)   gaagattaacgtaaatagtttccgacattaactagtttgcgttacattggtcctggttgataatgaagaagatgtacaatcttccaagagatttgccgga  6749800                                                                                          ---------->DOF2                                                                        <---------------AGL15                                                                        --------------->AGL15                                                                       ----------------->AGL1                    --------->WRKY12       <------ZmHOX2a(2)           ----------------->AGL2                    ----------->HVH21     <---------ARR14(2)           <-----------------AGL2   --------->ZAT18  --------->WRKY38(1)   --------->ARR14(2)           ----------------->AGL3 --------DEAR3(1)  <---------MYB52(1)     --------->AGP1          <----------DOF2    <----------DOF2 ------->ALFIN1   <---------At4g35610<-----------HVH21        <---------ZAT18 --------->ALFIN1 ----ZmHOX2a(1)   <-------GAMYB     ----------->HVH21     --------->ALFIN1  <-----------RAV1(1) -NtERF2         <---------ANAC46 <---------ANAC58     --------->DAG2  <-----------------AGL3     --- -->LBD16    <---------GLK1(1)    <---------ANAC58    ---------->DOF2  ----------------->AG  -------- -LBD16      --------->GLK1(1)   ------>NtERF2   --------->AtLEC2 <---------DAG2 <---------PCF2  <---   ggaggtgctctgtagaattccgttgacatctctgaggcctgtccgatctacttgcaaaaagtggagcactttatccaaatgtgggagctttgcaaagaag  6749900                                                          ------->TEIL                          --------->ANAC58             <---------YAB1        --------->ANAC46  --------->ANAC58          --------->ICU4        --------->ANAC58  --------->ANAC46 <---------AtMYB61 ---->TEIL  ---------->DOF2  ---------->DOF2        <---------YAB1 -->DOF2--------->ANAC58  --------->RAP2.6(2)    --------->ICU4 <---------TOE1(3)      --------->YAB1 ------ALFIN1        --------->At4g35610<-----------RAV1(1)     <---------TOE2(3)   --------->WOX13(1)   caccttgctcaagcaaaagtactagcagacgcaaaggagtttatggtggtcttgatgatgaattttagggtttatttgatgagagtcaatcttcaaaaca  6750000  Previous    Next  AGI:  At3g19460.1    Description:  reticulon family protein (RTNLB11). similar to reticulon family protein (RTNLB10) [Arabidopsis thaliana] (TAIR:AT2G15280.1); similar to Os04g0670000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054209.1); similar to H0818H01.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86090.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 6747376    to: 6749313    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g19470.1    Description:  F-box family protein. Identical to F-box protein At3g19470 [Arabidopsis Thaliana] (GB:Q8LCE9;GB:Q9LT70); similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G22770.1); similar to hypothetical protein 25.t00068 [Brassica oleracea] (GB:ABD64961.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6749530    to: 6751020    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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