Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------------->AGL15         <---------ANAC46         <---------ANAC58                                                              --------->WOX13(1)         <---------ANAC58                                                            --------->MYB46(3)         <---------ANAC55(2)                            --------->WOX13(1)    <-----------HVH21    <-         --------->ANAC55(2)                     <---------ICU4     <----------DOF2 --------->ANAC58 -------->MYB59                       >>>>>>>>>>>>>>>>>LFY        ---------->ID1    --------->ANAC58 ---->MYB111(1)          <----------DOF2        --------->ICU4   <-----------GT1  --------->MYB46(3)   gttagataatttcgtaatagagcaactctttcgcaaataaaaccattgtaaacattaccaattagtttttctttttttttggtcacaaccaattagtttg  6744200                                                                                <---------DAG2                                              --------->ANAC58            --------------->AtSPL8                                <---------ANAC58                      <---------ICU4                                <---------ANAC46                      --------->YAB1                                <---------ANAC55(1)                  <---------AHL20(2)                                --------->ANAC55(2)          --------->YAB1<---------ANAC55(2)                                <---------ANAC58          --------->YAB1--------->ICU4                        ---------->DOF2       <---------bZIP60(1)    --------->AHL20(2)                  --------->ANAC55(2)         --------->bZIP60(1)--------->AHL20(2)                  <---------ANAC58            --------->ANAC46  --------->YAB1  <----------DOF2                  <---------ANAC58            --------->ANAC58 --------->AHL20(2)                  <---------ANAC46          ---------->DOF2--------->AHL20(2) ------->TEIL                  <---------ANAC55(2)   --------->ZAT6   --------->AHL20(2)--------->ANAC55(2)        <---------AHL20(2)    <---------DOF5.7(2)  --------->ANAC58  <---------ATHB51       <-------- ---------->ID1  <-----------------------TaNAC69(2)--------->ANAC58--------->YAB1           --------- --------MYB46(3)<-------TEIL --------->MYB52(1) ----------->RAV1(1) --------->ICU4 <---------TOE2(3)   tttgttctattttatgaagtgcgtattaaagctaacgtgtttacagtaacgccacacaaataaaaataaaaataattatgtactttatggatttatagaa  6744300                                   --------->ARR11(3)                            <-----------HVH21                       <---------ANAC58                       <---------ANAC58     --------->YAB1   --------->ATHB12<----------DOF2   --------->TOE2(3)    ------->TEIL -HSFB2a(2)       --------->DAG2  <---------CCA1(2) <---------AHL20(2) <---------ARR14(2) >HSFB2a(2)  ----------------->AGL3<---------ARR11(3)<-----------GT1   --------->ARR14(2)   aaaacaagaatagtcaccaaaaattgattgtgtcatatatcttttgtcaactattttatcttatttttctatggatatgtatgtccaaaatgttagacaa  6744400                                       <---------ARR11(3)                                       --------->ARR11(3)                                      <---------GLK1(1)                                      --------->GLK1(1)                                      <---------CCA1(2)                                     <---------MYB52(1)                             <---------ALFIN1                                    <---------RAP2.6(3)                    <---------At5g28300                                 <---------At4g35610                      <<<<<<<<<GT-2                                 ------>NtERF2                            <-----------GT1          <-                              <---------At4g35610                     --------->AHL20(2)           --          <---------ICU4<---------ANAC58                              <---------AHL20(2)           <-          --------->YAB1<---------ANAC58                  --------->MYB46(3)     <---------SPL7   ---        --------->ARR11(3)<---------MYB52(1)        <----------DOF2  --------->AHL20(2)           ---   aaaaccaaaaaatcatgtccaaaatttcgttaggctgccgatatctctgtttccctttcaacgactatctatttaattaccgtcgtccacattgttttta  6744500               <------MYB46(1)              <---------AtMYB61                                                        --------->LBD16             <--------P                                                                ----------->GT1          <---------TOE2(3)                                        <---------YAB1     --------->LBD16  <----------DOF2                        <----------DOF2           <---------AtMYB61 <---------LBD16 --------ARR11(3)                 ------>MYB83            <---------DAG2            <---------LBD16 ------->ARR11(3)               <---------MYB59           <----------DOF2          --------->MYB52(1) --------AHL20(1)               <---------MYB46(2)       <---------DAG2           <---------ALFIN1 ------>CCA1(1)<------MYB83  <-----------GT1            ----------------->AGL1   --------->MYB46(3)-- ------>RVE1(1)<---------MYB46(3) ------>MYB46(1)     <-----------GT1          <-----------GT1-------   atatctttattcgaggttggtttagttttttttaccaaactcactttgctacgtttttgcctttttggtatggttgtatttgtaccaccgggaaaaaaaa  6744600             <---------MYB46(3)             <------MYB46(1)             <------MYB83            --------->MYB111(1)            --------->MYB55(2)            <---------AtMYB61            --------->MYB111(2)                    ------>MYB46(1)            <---------MYB46(3)                     ------>MYB83           <--------P                            <---------MYB111(1)          <-------GAMYB                   --------->ANAC46         <------MYB46(1)                  --------->ANAC58                      ------>ZmHOX2a(1)         <------MYB83                 <-----------GT1            <---------ARR11(3)        --------->MYB59           --------->AHL20(2)     --------->AHL20(2)  <-----------GT1    *TSS<---------AtMYB61--------->ICU4   --------->ANAC58       <---------AHL20(1)    <----------DOF2 ------->CCA1(2)   <---------At4g35610--------->CCA1(2)  <---------AHL20(2) <-----------GT1        -- --->DOF2<---------MYB46(3)  --------->AHL20(2) --------->ANAC46 --------->ARR11(3)------>ZmHOX2a(1)   gataagaggtttggttggtcgagcttactgattaaaaaatatacacgtccaccaaatattaaaacaatatatcccatttttcctcctctcttttggtatt  6744700               <-----------GT1           <---------YAB1        --------->AHL20(2)        <---------AHL20(2)        <---------AHL20(1)        --------->AHL20(1)     <---------AHL20(1)     --------->AHL20(2)     --------->AHL20(1)     <---------AHL20(2)                                             --------->YAB1   <---------TOE2(3)                                           <---------ZAT14  --------->YAB1                                      <---------ANAC58--------->ICU4  --------->AHL20(2)                                  <---------ANAC58<---------YAB1          <------ ------->TOE2(3)                     <---------AHL20(2)        --------->ZAT14       <---------GLK1(2)   acattaatattttattatttccccatttgctctgtatatataaacatatgtcaatagagtgcctctacagtcatgtttccatagacataatctctcacca  6744800                                                                                                  <--                               <----------ID1                                       ---------->DOF2                               ----------->GT1              --------->CCA1(2)   <------ZmHOX2a(1) ===                             ---------->DOF2           ---------->DOF2         ----------->GT1    ===                     <----------ID1               --------->ANAC58           <-----------RAV1(2)<---- ---YAB1         ---------->DOF2                  --------->ANAC58   --------->ALFIN1        <-------   ttgtttttctctgcaaaactaaagaaacaaaaaaagaaaaatcggagaaaccaagaaaaaagaaatgggaagtgtagaagcaggagaaaagaaggcttta  6744900                 ------>ZmHOX2a(1)               ==================================HOX2a_HOX2a               ------>ZmHOX2a(2)               ===========================HOX2a_HOX2a               <---------HSFC1(2)              ============================HOX2a_HOX2a              ===================================HOX2a_HOX2a              <------ZmHOX2a(2)             --------->ARR11(3)             <---------ARR14(2)             <---------ARR11(3)            --------->GLK1(1)                      <---------TOE2(3)      <------NtERF2 <-----------RAV1(1)            <---------TOE1(3)   --------->At4g35610                         <---------DAG2 ----ZmHOX2a(1)--------->HSFC1(2)              <----------DOF2 =====================HOX2a_HOX2a           --------->REM1(1)                  --------->ANAC58 ====================HOX2a_HOX2a            <---------ALFIN1            <----------DOF2 <------MYB83 -----TOE2(3)--------->ARR14(2)           ------>ZmHOX2a(1)     ------>ZmHOX2a(1)       <------MYB46(1) ---DOF2    <---------GLK1(1)      ------>ZmHOX2a(1)        <-----------GT1    --------->ANAC58   <--   ggatgggctgcaagagatccttctggtgttctctctccttactcctacactttaaggttttgtttcctcttctcctttcacaagaaaatttggttttgtt  6745000                                                                               <-----------RAV1(2)                                                                              --------->At4g35610                                                                              <---------At4g35610 ---                                                                            <------ZmHOX2a(1)    <---                                                                    <------ZmHOX2a(1)            <---                                                               --------->CCA1(2)               ------           <---------TOE2(3)                                  <---------AHL20(1)        <---------ANAC46           <---------TOE1(3)                                  --------->ARR11(3)      <---------ANAC46        <---------YAB1                                        <---------AHL20(2) --------->At4g35610       <---------AHL20(2)                                     --------->AHL20(1) <---------At4g35610 -------ANAC46  <---------AHL20(2)                     ----------->GT1   <-----------RAV1(2)  <------   atgtagaatttttatggttttattgaacttgtttttgttgaaaattgaattttggttttgttaatatataggagcacaggagcagatgatgtgtatataa  6745100  Previous    Next  AGI:  At3g19450.1    Description:  CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase. Identical to Cinnamyl-alcohol dehydrogenase (CAD) [Arabidopsis Thaliana] (GB:P48523); similar to CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34230.1); similar to cinnamoyl alcohol dehydrogenase [Arabidopsis halleri subsp. halleri] (GB:CAE46969.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-containing, c Range:  from: 6744604    to: 6747220    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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