Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                      <------ZmHOX2a(1)                           ---                                              <---------TOE1(3)                                   <--                                       <---------ANAC55(1)                  --------->TOE2(3) -------                                       <---------ANAC55(2)       <------MYB46(1)              <------                                       <---------ANAC46          ----------->GT1            ---------     --------->ANAC55(2)               <---------ANAC58          <------MYB83          --------->ANAC58 --------ICU4                          <---------ANAC58         --------->MYB111(2)    --------->ANAC58 -------YAB1         --------->GLK1(2) --------->ANAC55(2)      --------->MYB46(2)   --------->TOE2(2) ---->YAB1          <---------GLK1(2)--------->MYB52(1)       <---------MYB52(1)     --------->TOE1(2) ----YAB1 <---------REM1(1)       --------->YAB1 --------->CCA1(2)       <-----------GT1   ----------   atcattcacatgatgtaagatagattctagtttaaaacataacgtgttaagctataggaaaacagtttggtgatttaaccaaaataaccaaggaaaagct  6725100    <----------DOF2 <---------ALFIN1                                                    --------->YAB1 ----->ZmHOX2a(2)                                                    <------------ATHB5 ------>ARR14(2)                            <---------YAB1           <---------ICU4 -------ARR14(2)                       <---------HSFB2a(2)           <--------ATHB1 -->At4g35610                        ------>MYB83                    ---------->DOF2  --------->DOF5.7(2) ---At4g35610                        ------>MYB46(1)                <---------ATHB51<---------ANAC58 >DAG2                          <-----------GT1 ----------->GT1     --------->ICU4  <---------ZAT6 <- >DOF2                   ---------->ID1--------->HSFB2a(2)          <---------ATHB12<---------ANAC58   gatccactttaatcaactacaaaatttgttctcttaaccttccagtaagatagtaaaaaacatctgtacaataatgccagacattagcgttaccatactt  6725200                                                                                               <-----                                                                                               ------                                                                                    --------->AHL20(2)                                                                                    --------->AHL20(1)                                                                                 --------->AHL20(2)           --------->YAB1                                               <---------PCF2         ------          <---------YAB1                                              <---------DEAR3(1)       <-----        --------->YAB1                                                <---------ZAT18         <------       <------ZmHOX2a(2)      --------->STY1(2)  <---------ZAT6    <---------MYB46(3)<---------AHL20(2) ---------DOF2   --------->GLK1(2)         --------->ARR11(3)     <---------AtMYB61 <---------AHL20(1)   cctttggcgatcatcatagaatccatacacctagatagcataaatgattttgtgttagagcatccacattggtgggctctcaaaaatataatctctcacg  6725300                                          ----------->HVH21                                        --------->ANAC55(2)                                        <---------ANAC55(1)                                        <---------ANAC58                       <------------CBF                                        <---------ANAC55(2)                   --------->ATHB12                                        <---------ANAC58                  --------->AHL20(2)                            <---------HSFC1(1)                           --------->ARR11(3)   -------                  ----------->GT1       --------->ANAC46                 <---------AHL20(1)   <------                  --------->YAB1       <-------TEIL                      <---------ARR11(3)   ------- ----TGA1a    --------->AHL20(2)  <---------AHL20(2)                --------->AHL20(2)   ------------ --->TGA1a    <---------AHL20(2)  --------->AHL20(2)         <---------YAB1   <---------AHL20(2) --->O2   <---------YAB1    --------->HSFB2a(2)          --------->ARR11(3)  <---------YAB1   <------ ----O2--------->ICU4       <---------HSFB2a(2)        <---------YAB1    --------->AHL20(1)  <------- ---TOE1(2)  <---------YAB1 --------->HSFC1(1)     --------->YAB1   <---------AHL20(2)----------->HVH21   tttgatgaaaagattataaattgtaattttctagaattaaatacgtgacagaatcatatgattttgatatttaaaaatatttattggtctgaccaataaa  6725400                                                                          *TSS                                              <---------At4g35610      <---------At4g35610                                              --------->At4g35610    <---------WRKY12       --------->AHL20(1)               <---------ICU4              --------->DOF5.7(2)       --------->AHL20(2)               <--------ATHB1             <-----------HVH21 -->AHL20(1)                            -------->HAHB4            <---------bZIP60(1) ---AHL20(2)                           <---------ATHB12           --------->bZIP60(1) -->AHL20(2)  ----------->GT1          --------->ICU4             --------->O2 >CBF --------->YAB1                   <---------ATHB51      <---------ANAC58 ---AHL20(1)---------->DOF2          --------->YAB1          <---------ANAC58      --------->GLK1(1) --ATHB12--------->YAB1       --------->ANAC46----------->RAV1(2) <---------O2     <---------GLK1(1)   atatacaaaaataataaagaaaaatcccaaaaacacaactaataattcatctgcctcttcttgtcttgacgtcaactgtttgcagaaatctcactgaaac  6725500                   <---------ARR14(2)                   --------->ARR14(2)                  <------NtERF2                  <---------At4g35610                  --------->ATERF1(1)                 <<<<<<<<<AtERF-4                 <<<<<<<<<AtERF-5                 <<<<<<<<<AtERF-3                 <---------MYB46(3)                 <---------ERF1                 <<<<<<<<<AtERF-2                 <---------RAP2.3(1)                 <---------ATERF1(1)                 ------>NtERF2                                                                <------NtERF2                 <<<<<<<<<AtERF-1                                                           ---------                <---------DEAR3(1)                                                          ---------                <---------ANAC46                                                           --------->ATERF1(1)                <---------RAP2.6(2)                                                  --------->HSFB2a(2)                <---------RAP2.3(2)                                                  <---------HSFB2a(2)                <---------RAP2.3(3)                       ------>ZmHOX2a(1)      <---------CCA1(2)               --------->RAP2.6(3)                      =============================HOX2a_HOX2a           ------>MYB46(1)  <---------ATHB12            ------>ZmHOX2a(2)     ------>ZmHOX2a(1)------           --------->MYB52(1)--------->YAB1  --------->At4g35610         <----------DOF2  <---------ATERF1(1)           ------>MYB83   --------->WOX13(1) <---------ZAT2        <-----------GT1  <---------LBD16       >>>>>>>>>MYB2<---------ATERF1(1)      <---------At4g35610  ----------------------->TaNAC69(2)   tagagagaaaaccaaatggcggctactccaatcagagttatagtctcagctcttgtgatcctctcggtattactactttcctcgtctctgggagtcgcca  6725600                                             --------->ANAC58                                             --------->ANAC58                                  <---------At4g35610                                  --------->At4g35610                                <---------DEAR3(1)                               <-------TEIL  --------->ANAC46      ---------->DOF2                              --------->ALFIN1       <---------ANAC58        --------->YAB1 >ANAC58     <---------At4g35610<---------RAP2.3(2)  <---------ANAC46       <---------YAB1 >ANAC58     --------->At4g35610<---------RAP2.6(2)  <---------ANAC58     --------->YAB1    --------- ----->RAV1(1)   <---------ARR14(2)     <---------SPL7         --------->GLK1(2) --------->ARR11(3)   cagagacagaaattgagcggaacgagacagaggtgcggctgatgtacgagcaatggcttgtggagaatcgaaagaactataatggtcttggagagaaaga  6725700                                                                                           <---------At4g35610                                                                                          --------->MYB52(2)                                                            <------ZmHOX2a(2)            <-------TEIL                                                           <---------ARR14(2)          <---------GLK1(2)                ---------->DOF2                            --------->ARR14(2)          --------->ARR14(2)            ------>ZmHOX2a(2)                            --------->LBD16            <-----------RAV1(2)           <------ZmHOX2a(2)                            --------->HSFB2a(2)      <---------WRKY18(1)          --------->ARR11(3)                            --------->ANAC55(2)      >>>>>>>>>>WRKY11          <---------ARR11(3)                            <---------ANAC55(2)     ----------->HVH21          <---------ARR14(3)                            <---------HSFB2a(2)     --------->WRKY45          --------->ARR14(2)                            <---------ANAC46        --------->WRKY12          <---------ARR14(2)                           <---------LBD16          --------->WRKY38(1)          --------->AGP1                        --------->GLK1(2) <----------DOF2>>>>>>>>>>WRKY6 ---- ->DOF2   --------->ARR14(3)       <---------------------WRI1------>ZmHOX2a(2)<-------GAMYB--------->At4g35610   gagacgattcaagatcttcaaagacaacttgaagtttgtcgatgaacacaattctgttccggatcggacttttgaagtagggttgaccaggttcgctgat  6725800                                                           <---------ANAC46                                                         <-------TEIL                                                        --------->CCA1(2)                                <------ZmHOX2a(1)       --------->GLK1(2)                  <------ZmHOX2a(1)                              <---------TOE1(3)         --------->ARR14(1)          ---------->DOF2                        <---------AHL20(2)             <---------GLK1(2)      <---------------AtSPL8                        --------->AHL20(2)             --------->ARR14(2)  <---------RVE1(1)             <---------ZAT14  <---------TOE2(3)        --------->ARR11(1)  <---------CCA1(1)     <---------ATHB12  --------->AHL20(2)              <---------ARR14(2) <---------ARR11(3)  <------ --------->MYB46(3)   <----------DOF2      ---------->DOF2 ----------->GT1--------->ARR11(3)  ------- -->ZmHOX2a(2)    <---------------------WRI1       ---------->DOF2       <---------------------WRI1   ctaacaaatgaagagtttagagcgatttatttaaggaagaagatggaaagaactaaagattcggtgaaaactgagagatatttgtacaaagaaggagatg  6725900                                                       --------->ANAC58                                                       --------->ANAC58   --------------->AGL15                            <------ZmHOX2a(2)   <---------------AGL15                      <---------WRKY12  ----------------->AGL1            <---------MYB52(1) <---------TOE2(3)  <---------ANAC58                 <-------GAMYB   <---------ARR11(3)                               -  <---------ANAC58               <-----------RAV1(2)<XXXXXXXXXXXXXXXXXXXXMIR396B                    <  <---------AtLEC2               <------NtERF2<---------WRKY38(1)           ------->TEIL         <--- ---ARR11(3)                    <---------ZAT18    --------->ARR11(3)   ------->TEIL         <------- -->ARR11(3)                   <---------ANAC46---------->DOF2     <---------ANAC46          <-------   ttttgcctgatgaagtagattggagagcgaatggcgcagttgtttcagtcaaagatcaaggaaactgtggtatgtatgcattttagttttcttagctttt  6726000  Previous    Next  AGI:  At3g19390.1    Description:  cysteine proteinase, putative / thiol protease, putative. similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60578.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201); contains InterPro domain Granulin (InterPro:IPR000118) Range:  from: 6722995    to: 6725033    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g19400.1    Description:  cysteine proteinase, putative. Identical to Probable cysteine proteinase At3g19400 precursor [Arabidopsis Thaliana] (GB:Q9LT77;GB:Q8GT77); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT3G19390.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60578.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptid Range:  from: 6725474    to: 6727006    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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