Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ZAT18                                                                     --------->ZAT18         --------                                  --------->LBD16              ------>NtERF2                <--------                                  <---------LBD16             --------->DEAR3(1)            <--------                                <---------LBD16              <------NtERF2              <----------DOF2  <---------MYB46(3)           ----------->RAV1(2)          ------>NtERF2              <---------ANAC58 <---------ANAC46             --------->ARR14(2)           --------->DEAR3(1)          <---------ANAC46 --------->ALFIN1             <---------ARR14(2)          <------NtERF2                <---------ANAC58 --------ANAC46               ------->TEIL               <-----------HVH21        --------->ZAT2 ------>ALFIN1               <---------CCA1(2)           <---------ATERF1(1)      <---------ZAT2 ---------RAV1(1)          <---------ANAC55(2)          <---------DEAR3(1)        --------->At4g35610 -------AtMYB61     --------->ANAC58                    <---------MYB46(3) --------->HSFB2a(2) --->MYC3           --------->ANAC58       --------->ALFIN1<---------DEAR3(1)     <---------At4g35610 ----MYC3         --------->MYB52(1)     <------ZmHOX2a(1)--------->ATERF1(1)    --------->GLK1(2)   gtggtgggcagtttttggagtaacgaaacgcgtacctggggaaggatggggaagatggtcgtcgccgagagagccctctggagaagctggcttgaaggta  6668000                                                                       --------->YAB1                                                                       ----------->GT1                                                                --------------->AGL15                 --------->At4g35610                            <----------DOF2       <------NtERF2                                           <-----------------AGL3     <---------RAP2.6(2)                                       <-----------------AGL1         <------    --------->ZAT14                                            ----------------->AGL2         -------    --------->SPL7                                          --------->WRKY12                  -------    --------->RAP2.6(3)                                     --------->WRKY45                  -------    <---------ZAT18                          --------->At4g35610<---------------AGL15         <------   --------->ALFIN1                      --------->ANAC58   --------->WRKY38(1)               ------- --->GT1       --------->DAG2          ---------->DOF2     --------->DOF5.7(2)               <------- -TOE2(3)     ---------->DOF2   <---------YAB1      --------->YAB1--------->AHL20(2)         -------- -TOE1(3) <------NtERF2      <-------TEIL--------->ANAC58 --------->TOE1(3) <---------ATHB12 <-------   aaacagtgcggcatcgaaaagctgaacttgattcatcaatggaaagctactgactcataacgttgactttaaatggtaatcaattgaaagacttaattat  6668100                                                                          =================HOX2a_HOX2a                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)      <---------ANAC46                                                   ==================HOX2a_HOX2a     ---------->ID1                                                     <---------ARR14(2) <----------DOF2                                                        --------->ARR11(3) ---ICU4                                                                <---------ARR14(3) -->ATHB12                                                              <---------ARR11(3) ->HAHB4                                                                --------->ARR14(2)     ------ -->ATHB51                                                              --------->AGP1         <----- ---AHL20(2)                                                            <---------AGP1  <---------ANAC58 ->ATHB1                                  ---------->DOF2    <---------At5g28300        <---------ANAC58 --ATHB51                  XXXXXXXXXXXXXXXXXXXX>MIR3933    <---------MYB52(1)       <------ZmHOX2a(1) ->ICU4             ----------->GT1  <------ZmHOX2a(1)    <-----------HVH21       <---------TOE2(3) --YAB1       --------->YAB1--------->AtMYB61     ---------->DOF2       --------->ARR14(3) <---------   tgtctttttcgtctagtcatattagtaaaaccaaaacaaggactcaaagtctcaaagagctgttactgctacaagatcttgttgaaggatgagtgtcatg  6668200                                                          <----------DOF2                                                          <---------DAG2                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         --------->ARR14(2)                                         -                                         --------->ARR11(3)                                         -                                         <---------ARR14(3)         <---------ANAC58         <------NtERF2                                         --------->ARR14(3)         <---------ANAC58        ---------                                         <---------ARR11(3)         <---------ANAC46        <------NtERF2                     --------->AtLEC2    <---------ARR14(2)       <---------At5g28300       <--------    <---------MYB46(3)                   --------->AGP1  <---------ANAC58                  <---------DEAR3(1) --->ICU4         <-------TEIL<---------At5g28300        <---------ANAC58                 <---------LBD16 ----YAB1       <---------ARR14(2)       <---------AGP1 ---------->ID1        --------->ALFIN1 <----- --HVH21    <---------At4g35610 <---------ZAT6    <---------ZAT6 <-----------GT1       --------->MYB59   agtcaattgttgagagccgattcatgcacaattactgttacaagatcttgtagtgtttggctttttgttaccgtgtgaatgtgttgaattaggccggggc  6668300                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                                                              --------->ANAC58   <---------AHL20(1)                                                              --------->ANAC58   --------->AHL20(1)--                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58      --------->ANAC58                                   --------->ANAC58<---------DEAR3(2)      xxxx      --------->ANAC46                               --------->ANAC58    ----------->GT1      <------      --------->ANAC58                               --------->ANAC58    <------MYB83  <---------ANAC46 -------->ANAC58                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ------- -------->ANAC58                               <-----------HVH21 <-----------GT1 --------->AHL20(2)-- >LBD16                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58 -ATERF1(1)                                   --------->ANAC46----------->GT1    <---------AHL20(2)-- ----ZAT18<---------REM1(2)               <-----------GT1--------->ANAC58<------MYB46(1)    xxxxxxxxx   acaagtactcgctactcggctcgtactcaccttgaaaattcaagttactcgtcataggcaagtcaagtaacaagtcggtttattttattacttgcaagtg  6668400                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           <---------ANAC58                                                                          --------->MYB52(2)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        <---------MYB52(1)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------AHL20(2)                             ----------->GT1                      --------->AHL20(2)                           ---------->ID1           xxxxxxxxx                   <---------ICU4                              <---------ANAC58             xxxxxxxxx                  <---------YAB1                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <x    --------->ANAC58  <---------AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC58    --------->ANAC58  <---------AHL20(1)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC58 *TSS        --------->YAB1                    xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC58 xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------ANAC58 --------->ANAC55(2)    --------->MYB52(2) ------->ANAC58   --------->ICU4              <---------ANAC58 <---------ANAC58     xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->MYB52(2)<---------ANAC55(2)  <---------MYB52(1) -PIF5     --------->ANAC55(2)             <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <xx >PIF5     <---------ANAC55(2)             xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->ANAC58 --------->YAB1    <---------ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxx ------->ANAC46<---------YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------HVH21 xxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(le3)      <---------ANAC58        <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   caagccaagtatcaagtatcataatttttttttgatacttgcctcgttacttgcctcgttttgatacttgtcccgttacttgcctcgttacttgcctcat  6668500                                                                      <------MYB46(1)                                                                 <--------ATHB1                                                                 --------->YAB1                                                                 --------->ATHB12                                                                 <---------ICU4                                                                 --------->ATHB51                                                                 -------->HAHB4                                                                <---------YAB1                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <---------ANAC58--------->ICU4                <---------ANAC58                <---------ANAC46<---------ATHB12            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <----------DOF2                      <---------ANAC58<---------ATHB51           ------>ZmHOX2a(1)                 ----------->HVH21--------->YAB1                     ----        ---------->ID1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---------AHL20(1)  <---------YAB1<---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(1) <---------TOE2(3)       <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2) xxxxxxxxxxxxxx>smallRNA(l2)      --------->MYB52(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  - xxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<--------HAHB4 --------->AHL20(2) <- xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->CCA1(2)  <--- xxxxxxxxxxxxxx>smallRNA(i2)    <---------MYB52(1)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<--- xxxxx>smallRNA(le3)    <-----------HVH21xxxxxxxxxxxxxxxx>smallRNA(s) <------MYB83   <---------AHL20(2) xxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(2)  --------->AHL20(2) xxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)--------->MYB59<---------AHL20(2) xxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------ZmHOX2a(2) ----------->GT1       <---   tttgatgtttgtccttttacttgctctgttactcgttatttgtacatgtgacttgtgggatcactaataattaggtctggatataaataaatttctatta  6668600                                                             --------->YAB1                                                           --------->AHL20(1)                                                           <---------AHL20(1)                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                          --------->YAB1                                                         <---------YAB1                                                       -------->ATHB1    ----------->GT1                                    --------->YAB1 ----->ANAC55(2)                                       <---------ICU4                         ------- ------->P                                            <---------AHL20(2)             <---------ANAC46 ----------GT1                                        --------->AHL20(2)            ---------->ID1 ------ANAC58                                         <---------ATHB51   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ANAC55(2)                              --------->ICU4<---------YAB1          <xxxxxxxxxxxxxxxxsmallRNA(s) ------ANAC58                         --------->YAB1  --------->ICU4 <---------AHL20(2)    ----------   cttaccttgttaattgttgaacattgtatacttgttactaacatactaatgcttaaattattataatagatttaaaattttggtttggcctataaaagct  6668700                                            <---------YAB1                 <-----------GT1        --------->AHL20(1)              --------->YAB1           <---------ICU4              ----------->GT1    --------->TOE2(3)                            <---------TOE2(3)          <---------AHL20(2)     --------->TOE1(3)                            <---------TOE1(3)          <---------AHL20(1)  <---------WRKY18(1)                             --------->MYB59    <---------AHL20(2)       --------->WRKY12                            <---------AHL20(1)       <--   --------->AHL20(2)     --------->ATHB12  <---------ANAC55(2)          --------->AHL20(1)       --- ---->GT1 --------->AHL20(1) --------->WRKY38(1)              <---------AHL20(2)          ---------->DOF2 >DOF2    --------->AHL20(2)<---------WOX13(1)          ----------->GT1  --------->AHL20(2)     -----   aaaaatttaaaatttattgtaacaaaactcattgaccttaaatattatgtatgaaatagggttttttattccaaatattttaggttctaagtaaaagtat  6668800                          --------->ANAC55(2)                          --------->ANAC58                       --------->WRKY18(1)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <-----------HVH21                     <------NtERF2                    <---------MYB46(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------MYB52(2)   <---------ANAC58                                                     -         --------->ANAC58 <---------ANAC55(2)                   <---------ANAC58                    -         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------ANAC58                <----         ----------->GT1  ----------->GT1                      <---------STY1(2)              <------         --------->ANAC58 --------->ANAC58 --------->YAB1      --------->STY1(2)             --------        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------ANAC58                 --------  <---------ICU4   <---------ANAC58  --------->ANAC46       <---------ANAC58                 -------- -------AHL20(2)   <---------ANAC46  --------->ANAC58   --------->ANAC58                --------->ANAC58 ------>AHL20(2)   <---------ANAC58  --------->ANAC58   --------->ANAC58                --------->ANAC58 ------------------>TaNAC69(2) <---------ANAC58        xxxxxxxxxxxxxxxx>smallRNA(i) <-----------GT1 -   ttaattttggcaagtaacaaggcgggtcaagtaacttgcaagtaatcaaaatttagacaagtacttgctagaccaagtagtcgttttaacaaggcaagta  6668900  Previous    Next  AGI:  At3g19250.1    Description:  Identical to UPF0496 protein At3g19250 [Arabidopsis Thaliana] (GB:Q9LJK4;GB:A0MEX0); similar to polyadenylate-binding protein-related / PABP-related [Arabidopsis thaliana] (TAIR:AT3G19330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67266.1); contains InterPro domain Protein of unknown function DUF677 (InterPro:IPR007749) Range:  from: 6666848    to: 6668401    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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