Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------MYB46(3)                                     <--------P                                    <---------ANAC46                                    <---------ANAC58                                    <---------ANAC58                                    <-------GAMYB                                 <--------P                                 --------->ALFIN1                               ===============MYC_MYB                               --------->O2                               ===============================bZIP_DOF                               =============MYC_MYB                               --------->ZAT2                  ------>ZmHOX2a(2)<------MYB83          <---------DOF5.7(2)                --------->ARR11(3) <------MYB46(1)       <---------At5g28300                <---------ARR11(3)<---------MYB46(3)    <-----------GT1               <-------TEIL               --------->YAB1  <---------ZAT2<---------At5g28300                  --------->MYB59              <---------ATHB12 <---------O2 <-----------GT1                       <---------TOE2(3)         ------>NtERF2         <---------TGA1a     ---------->DOF2                --------->DAG2 <---   <---------ANAC58            --------->TGA1a    <---------WRKY12      <---------MYB46(3)    -------   <---------ANAC58          <-----------RAV1(2)<-----------HVH21      <---------------AtSPL8 <------   ccattttgtgcctccaatgatctgatcaaacacaggtgggttgtttttaccgtcaaagttaccgtagtagtaagtggttcgaataaggtacttggaggtc  6663100                                              --------->ANAC58                                              --------->ANAC58                                            ---------->DOF2                                          <------NtERF2           <---------ARR14(2)                                         --------->HSFB2a(2)      --------->ARR14(2)                                         <---------HSFB2a(2) <---------ANAC46                <-----------GT1         --------->ETT(1)   --------->REM1(2)           <----------DOF2      ----------->GT1                   <---------LBD16   --------->ALFIN1      <----------DOF2    <-----------RAV1(2)                 <---------ANAC46<---------ANAC46     --------->ARR11(3)  ----------->RAV1(1)              <---------ANAC58--------->ANAC55(2)       <---------ARR11(3)  <--- ----------->HVH21                 <---------bZIP60(2)  <---------ZAT6   <---------TOE1(1)      ----- -------DOF2   <---------YAB1      <---------ANAC58<---------ANAC46      <---------TOE2(1)     <----- -->ARR11(3) --------->YAB1 <---------HSFB2a(2)  --------->MYB52(1) ------>ZmHOX2a(2) <---------ANAC58 ---ARR11(3)--------->ICU4  --------->HSFB2a(2)<---------MYB52(2)<------ZmHOX2a(1)    <---------ANAC58   tttgcgacagggaaattataacagtgttttcgcgatgacttgtcgggaaagtaacgtagtgtggagaggatcggaacgaggtctttttgcttaatggtcg  6663200         --------->ANAC58         --------->ANAC46      --------->ALFIN1         --------->ANAC58  --------->SPL7        --------->LBD16    <---------LBD16        <---------LBD16  <---------SPL7                 <-------GAMYB  --------->GLK1(1)      <-----------HVH21             <---------MYB46(3) ---NtERF2            ------>ZmHOX2a(1)                --------->MYB52(2)              <-----------GT1 ------------------>TaNAC69(2) <---------ANAC46   <---------TOE1(3)           --------->AHL20(2) ----DEAR3(1)     ------->TEIL<---------MYB52(1)  <---------TOE2(3)    ------>ZmHOX2a(2)    <--------   tcgtatttcccacggaaatgaatccttcgtccggtgtgtattctatctcgttgaggtttgttgaagaagatgatccacaatttaagaagaaacctttcac  6663300                                                                                            <-------TEIL                                                                                           --------->ARR14(1)                                                                                           --------->CCA1(2)                                                                                          --------->ARR14(2)                                                                                          --------->ARR11(1)                                           <---------AtLEC2                               <---------GLK1(2)                                         --------->ANAC58                                 <---------ARR14(2)                                         --------->ANAC58                               <---------YAB1                               --------->YAB1                                    <---------GLK1(2)      ------->TEIL  <---------TOE2(3)--------->YAB1                    <-----------------AGL2 ---HVH21   <-----------------AG <---------YAB1                      --------->GLK1(2)--------->YAB1   atggaatgaaactcgacgttttagggtagtctataacaattgtaagcatggattcaagagtgtttttggaaattctgtaaatggattatcaagattcgat  6663400                              --------->AHL20(2)                              <---------AHL20(2)                             --------->AHL20(2)                           --------->YAB1                           --------->ALFIN1                         --------->AHL20(2)                        <------ZmHOX2a(1)                         --------->AHL20(1)                  --------->HSFB2a(2)                        --------->YAB1                       <---------HSFB2a(2)                ------------------------>ANAC81 --------->ANAC58 --------->ALFIN1      <-------------             --------->AHL20(2)         ----------->GT1 <---------At5g28300 <---------ANAC58    -----   ----------->GT1--------->YAB1     <---------GLK1(2) <-----------GT1      <---------ANAC58 --------  ------------------------>ANAC81 --------->YAB1--------->ANAC58<------ZmHOX2a(1)  --------->CCA1(2)   cgaaaatgtaaaaaaaaaaatcagaaaaataataaataagaatcgcaaaaacgaaatttacctcgaggaggagggagagcgtgagagatggagaagcata  6663500                                 ------->TEIL                              <---------ANAC58                              --------->ANAC55(2)                              <---------ANAC55(2)                                     <------------CBF                              <---------ANAC46                                --------->GLK1(2)                              <---------ANAC58                               --------->ARR14(2)                              <---------ANAC55(1)                          ----------->ARR10                             ----------->STF1                     >>>>>>>>>TBF1    >>>>>>>>>>>>>>>>>LFY                            <---------TGA2(2)                  >>>>>>>>>TBF1 <---------GLK1(2)                           ----------->HVH21                >>>>>>>>>TBF1<------ZmHOX2a(2)    ---------->DOF2        ----------->TGA1               ------------------------>ANAC81 --------WRI1         --------->ATHB51               ---------->DOF2    <---------ARR11(3)   -------- ---->YAB1           --------->ICU4           ------------------------>ANAC81<---------ARR14(2) ->YAB1              <---------YAB1       <---------------------WRI1    --------->ARR11(3)   <-------   ataagagaaagaagaacagagacattattgtgacgtattttgttgaagaaacagacaaagaagaagaagaagaagatcagattctttccattgtcgttaa  6663600                                                                                 --------->AHL20(2)                 ---------->DOF2                                 --------->DAG2  <---------AHL20(2)   <------ZmHOX2a(2)                                            ---------->DOF2 <---------AHL20(1)  --------->ARR11(3)                               <----------DOF2              --------->AHL20(1)  <---------ARR11(3)                               <---------------AGL15        --------->AHL20(2) <---------GLK1(1)                                 --------------->AGL15 ----------->GT1    --------- ->DOF5.7(2) <------------CBF             --------->TOE2(3)    <---------ATHB12 <---------AHL20(2) --MYB52(1) --------->ATHB12             ----------->GT1   ------------>CBF <---------AHL20(2)   tggagatcatacaaagattgaaagtagagaaaatgtctgaaaaatgttaatttcttttttttgcaataaagttaagagttaatttaataagacatacaat  6663700                                                                          ----------->RAV1(2)                                                                          --------->ZAT2                                                                         ------>MYB46(1)                                                                      xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                <-------TEIL                                                             <------MYB46(1)                                                             <---------DEAR3(2)                                                             <------MYB83-------->P              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------HSFB2a(1)              xxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------HSFC1(2)              *TSS --------->At4g35610                       --------->HSFC1(2)              xxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->HSFB2a(1)              xxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------TOE1(2)  <---------ANAC58              xxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------TOE2(2)  <---------ANAC46              xxxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------SPL7 ------>MYB83              xxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxx>smallRNA(se3)------>NtERF2              xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58              xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              xxxxxxxxxxxxxxxx>smallRNA(i)      --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2       ---------->DOF2    <---------MYB46(3) ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxx>smallRNA(s)    <----    --------->YAB1 <---------At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxx>smallRNA(si3) --->CBF     ----------->RAV1(2)         xxxxxxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1      -------   atagaataagaaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctacctggcgcgtttttattttggcc  6663800                                                                                          --------->AHL20(1)       <---------YAB1                                         --------->YAB1              <---------ARR11(3)      <---------AHL20(2)                                     <---------YAB1               <---------AHL20(1)      <---------AHL20(1)                           --------->ARR11(3)     --------->ANAC46--------->ARR11(3)    <---------YAB1  <---------DAG2                --------->YAB1          <---------ANAC55(2) -----DAG2       <-----------GT1                  <---------ICU4  <----------DOF2        --------->YAB1 --->ID1      --------->ANAC55(2)          <----------DOF2 --------->YAB1 --------->ANAC55(2)   ttatctattatttttcatgtaaccttttctctgtgtttcatactactttcaattatctcgattatcatctttttatacgtgaataatgcaaaaatatttg  6663900                                                                   --------------->AtSPL8                                                                   <---------------AtSPL8                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                            --------->AHL20(1)                                                            --------->AHL20(2)                                                            <---------AHL20(1)                   ----                                                          --------->ARR11(3)                    <----                                                          --------->AHL20(1)                 <-------                                                          <---------AHL20(1)                ---------                                                          <---------ARR11(3)             <---------AHL20(2)                                                     --------->AHL20(2)                 --------->AHL20(2)               <-----------GT1                       <---------AHL20(2)                 <---------AHL20(2)        <------ZmHOX2a(1)    <----------DOF2        --------->AHL20(2)      --------->TOE2(3)--------  <---------YAB1     <---------DAG2               ------->TEIL <---------AHL20(2)   --------->ICU4---   tattttcataggagagtttacaaccttttctctttgtattttcaaatgtatgaatttaaaaatattttaaatgtacaacctttgtaacaattaaatatat  6664000  Previous    Next  AGI:  At3g19230.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G05990.1); similar to hypothetical protein OsI_010048 [Oryza sativa (indica cultivar-group)] (GB:EAY88815.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 6661094    to: 6663525    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g19235.1    Description:  pre-tRNA. tRNA-Arg (anticodon: CCT) Range:  from: 6663714    to: 6663786    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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