Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------MYB52(1)                                  <-------GAMYB                                 <---------ANAC58                                 <---------MYB46(3)         --------->ANAC58        <---------ANAC58         --------->ANAC58    <---------RAP2.6(2)       ---------->DOF2      --------->At4g35610    --------->ANAC58       <---------MYB46(3)                    <-------TEIL    --------->ANAC58      --------->ALFIN1                    ------->GAMYB --------->HVH21        --------->ALFIN1                  <---------ETT(2) ------->RAV1(2)       <------ZmHOX2a(1)                  --------->ETT(2) ----->At4g35610   <------ZmHOX2a(1)                    <-----------HVH21                 ---------->DOF2 ------At4g35610--------->LBD16------>NtERF2    <---------WOX13(1)                     --------->TOE2(3)   tctgacaccgaaagcacccgaggaaggagtggctgccgttgcacaactagattgcccctgtcaaccgtgcataagtatcaattccatttccataaaacaa  6658500                 --------->At4g35610   --------->TOE2(3)                 <---------At4g35610  <---------ICU4                  <----------DOF2    <---------ANAC55(2)               --------->YAB1            <---------ARR11(3)    --------->ANAC55(2)         <-----------GT1           --------->ZAT6 <---------ARR14(2)             --------->YAB1           --------->ZAT18 --------->ARR14(2)<-----------HVH21 <---------ATHB12    <---------ZAT14                   --------->MYB46(3)   tggaatacgcgtttgatacagcttcagagactattcacaatcatcaatttgaacaagagaacactaaatctcctttaaaatccctaaattcgaaccacta  6658600                                                                                                -----                                                                                                -----                                --------->HSFB2a(1)                                         ---------                                <---------HSFC1(2)                                          ---------                                --------->HSFC1(2)                                          ---------                           --------->SPL7                                                   <--------                          --------->MYB52(1)                                                ---------                      --------->ANAC58                 <---------At4g35610      =====================                      --------->ANAC58              <-------TEIL                <------ZmHOX2a(1)  <-                   --------->At4g35610          <---------TOE2(3)               =====================                <---------At4g35610             <---------TOE1(3)           --------->TOE1(2)  ------                --------->At4g35610  --------->WOX13(1)--------->At4g35610  --------->TOE2(2) <------   aaactccaaatgatatgtagcagcaagcgaacgaagcatctatcaggtttagggttcagcttcaatttcaaattgaaatctaggaaattcaattacgcac  6658700         <----------DOF2      <------ZmHOX2a(2)     --------->ARR14(3)     <---------ARR14(3)     --------->ARR11(3)     <---------ARR11(3)     <---------ARR14(2)     --------->ARR14(2)   ----------->ARR10                   --------->At4g35610 <---------At4g35610                   <-------GAMYB ---->ANAC58                          <---------MYB46(3)            <---------ZAT18 ---->ANAC58           <---------GLK1(1)                      <---------ARR11(3) >ANAC58 =============================HOX2a_HOX2a             --------->ARR14(3) >ANAC58 ============================HOX2a_HOX2a              <-----------ARR10 >ANAC46 ------>ZmHOX2a(1)           <---------ANAC46   --------->ANAC46 -ANAC55(2)  <---------ANAC58      <-----------HVH21 <---------ALFIN1                             --- >ANAC55(2)  <---------ANAC58  ------>ZmHOX2a(2)     --------->AtMYB61                            --- ============HOX2a_HOX2a      <------ZmHOX2a(2)     --------->MYB46(3)                            --- ----------RAV1(2)     --------->GLK1(1)   ---------->DOF2    --------->ARR11(3)                  <-- =============HOX2a_HOX2a    <---------ARR14(2)     <---------MYB55(2)                            <-- ->TEIL------>ZmHOX2a(2)   <XXXXXXXXXXXXXXXXXXXXMIR168A/B     <---------ARR14(3)                 <--- ---ALFIN1<---------MYB52(1) --------->ARR14(2)     <---------ABI4(2)                       ------>ZmHOX2a(1)   ctcagaagatcctttacgttcttagatttccgatctgcgtcggatgaaagagaaaccaccgcaaggtcttcgcactcagggttatcgttttctccttcag  6658800             --------------------->WRI1                   =======================HOX2a_HOX2a           <---------YAB1                                 ------>ZmHOX2a(2)         --------->YAB1                                  <---------GLK1(1)       --------->GLK1(2)                                 <------ZmHOX2a(2) ------>ARR14(2)                                         XXXXXXXXXXXXXXXXXXXXX>MIR831 ------>GLK1(2)                                          --------->GLK1(1)                --------->TOE1(2) ------>ARR11(3)                                         ========================HOX2a_HOX2a------>MYB83 -------ARR14(2)                <---------HSFB2a(1)     <---------ARR11(3)                --------->TOE2(2) -------ARR11(3)    <---------MYB52(2)                  --------->ARR11(3)             --------->REM1(1) ------GLK1(2)    <-----------GT1         --------->YAB1<---------AGP1    ------>ZmHOX2a(1) ------>MYB46(1)   aatcttgagaatcatccttgtaactatcgctggaatcgtcgcaatcggaagacgataagatctcttcatcttcttcctccattttcgttacacctacgag  6658900                                            *TSS                                          --------->ANAC58                                      ------>NtERF2                                        --------->AHL20(2)                                     <---------ANAC46                                      <---------AHL20(2)              <-----------GT1        <---------DEAR3(1)                          --------->AHL20(2)          <----------DOF2            <---------ATERF1(2)                         <---------AHL20(2)   <---------ZAT2  ------>MYB83      <---------RAP2.6(2)                         --------->ATHB12  --   --------->At4g35610         <----------DOF2                                  --------->AHL20(2) --   --------->ZAT2--------->AtMYB61   --------->ATERF1(2)                        <---------AHL20(1) <-   <---------At4g35610 ------>ZmHOX2a(1)  --------->ANAC58                      <---------AHL20(2)---   --------->GLK1(1)  --------->TOE2(3)<------NtERF2                          ------>MYB46(1)   <----   <---------GLK1(1) --------->YAB1 --------->RAP2.6(3)                       ------>MYB83 --------->AHL20(1)  <-----------ARR10------>MYB46(1)  <---------LBD16               ---------->DOF2--------->ATHB51 ---   cccagagctccgcttttgaccaatcctaaaactcttttggcggcaagaaataaaaccaaaaacaaaaacaaagaaaaaccaaattatttgaaataaaata  6659000            <------ZmHOX2a(1)        ---------->DOF2    --------->YAB1               <---------ARR14(2) ------->TOE1(3)                 --------->ARR14(2)     ------>ZmHOX2a(1)     ----------->GT1 ------->TOE2(3)     <---------ARR11(3)                <---------MYB59    <---------YAB1 --------DAG2        --------->ARR11(3)             <-----------GT1 <-------TEIL -------------->AGL1--------->RVE1(1)    --------->ANAC58     <---------MYB52(1) -------GT1<----------ID1------>ZmHOX2a(1)    --------->REM1(1) --------->MYB52(2)    ----------->GT1 -------------->AG  --------->CCA1(1)    --------->ANAC58--------->MYB52(1) <------------CBF     ----   accttatcagaaaaggactaaaatatccttcagagtatatgggacgctacaatttttcctaacagttagtttcatgaagattgtaaatttgtaattttcc  6659100                                                                                          ------->PIF5                                                                                          <-------PIF5                                                                                         --------->ZAT2                                                                                         <---------At4g35610                                                                                         <---------ZAT2                                 <---------ARR14(2)                                      ----------->RAV1(2)                                 --------->ARR14(2)                    --------->ANAC58  --------->At4g35610                                --------->RVE1(1)                      --------->ANAC58 ------->TEIL                  --------->ANAC46            <---------AHL20(2)       --------->ANAC46<---------ALFIN1                  --------->ANAC58        <---------AHL20(2) --------->ATHB12         <---------At4g35610                  --------->ANAC58        --------->AHL20(2)<-------TEIL              <------NtERF2        --------->ANAC55(2)     --------->CCA1(1)          <--------P *TSS           --------->RAP2.6(2) ----->LBD16  <-----------GT1   <---------GLK1(1)       <---------TOE2(3)           --------->PCF2   ccaagtttttaagtatttacacacaaaaacaaaaatatccgaatttttttaattcgtcgaggttgattacttcacccaatttcatggccgcacctgcaaa  6659200                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                -----                           <---------ICU4                                                       <----                        --------->TOE2(3)                                                       <----                     <-----------GT1                                                           ------                    --------->KAN4(2) ------>NtERF2                                         <--------               <---------YAB1<---------WOX13(1)                     ------>ZmHOX2a(1)      <-------GAMYB   cttctcgtctcaatgttccgattataccctaattgctctctgccttctcacagacctctcgttttccttcctcgtcttccttctcgctccctccgttgcc  6659300     <---------At4g35610     --------->At4g35610     ------>NtERF2    --------->RAP2.3(2)    --------->DEAR3(1)   --------->RAP2.3(1)   --------->DEAR4(2)   <------NtERF2   --------->ATERF1(1)                                                                              -  <---------ATERF1(1)                                                                              <-  <---------RAP2.3(1)                                                                             <--  --------->ABI4(1)                                                                              <---  ------>NtERF2                                                                                  <--- <---------DEAR3(1)                                                                              ---- --------->ATERF1(2)                                                                            <---- <---------ATERF1(2)                                                                            ----- --------->RAP2.3(2)                                                                           ------ --------->RAP2.3(3)                                                                           ------ --------->RRTF1(3)                                                                            <----- --------->RRTF1(2)                                                                           ------- --------->DEAR3(1)                                                                           ------- <---------ALFIN1                                                                             ------- -------->RAP2.6(1)                                                                           <------ -------->DEAR4(2)                                                                            <------ -------->ERF1                                                                                ------- -------->DEAR3(2)                                                                           <------NtERF2 -------->ORA47(2)                                                                           -------- -------->RRTF1(1)                                                                           -------- -------->ATERF1(1)                                                                          -------- -------->RAP2.3(1)                                                                          -------- ------NtERF2                                                                                -------- --------ATERF1(1)                                                                           -------- --------RAP2.3(1)                                                                           -------- ---->NtERF2                                                                                <-------- ------>ANAC46                                                                              <-------- -------DEAR3(1)             --------->GLK1(2)                                             --------->DEAR3(1) ------>DEAR3(1)             <---------ARR14(2)                                           --------->ATERF1(1) -------ALFIN1           <---------ANAC46                         --------->ANAC58       <-----------HVH21 -->NtERF2               --------->ANAC58                         --------->ANAC58      <---------ANAC58 ----->ATERF1(1)         --------->ANAC58                --------->MYB46(3)             <---------ANAC58 ---->DEAR3(1)           <---------ANAC55(2)       <---------ARR14(2)        <---------LBD16------>NtERF2 -----ANAC58             --------->ANAC55(2)---------->DOF2       --------->ANAC46      --------->ANAC46 -----ANAC58          ----------->HVH21   <---------HSFB2a(2) <-----------HVH21    --------->HSFC1(2) --->ATERF1(1)        ----------->TGA1    --------->HSFB2a(2)----------->HVH21     <---------HSFC1(2) -MYB52(1)<----------TaMYB80 --------->ARR14(2)    --------->ARR14(2)       <---------LBD16<---------DEAR3(1)   gcgccgccgctgatattccccttggtgacggaatccgattacctcgagaagcggattcaacctctgacacggcgaggtctcgggatgtttccgtcgccgc  6659400  Previous    Next  AGI:  At3g19210.1    Description:  ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase. similar to ATRX/CHR20, ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT1G08600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70202.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47796.1); similar to OsRad54 [Oryza sativa (japonica cultivar-group)] (GB:BAF56217.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro doma Range:  from: 6652751    to: 6658944    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g19220.1    Description:  CYO1/SCO2 (SHI-YO-U MEANS COTYLEDON IN JAPANESE); protein disulfide isomerase. similar to unnamed protein product [Vitis vinifera] (GB:CAO47803.1) Range:  from: 6659170    to: 6660858    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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