Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->YAB1              <----------ID1            <---------ICU4            --------->YAB1           <---------YAB1          --------->AHL20(2)                --------->ANAC58          <---------AHL20(2)       --------->YAB1          --------->AHL20(1)    ------>MYB83--------->ANAC58                           ----------->GT1         --------->YAB1         ------>MYB46(1)                                  ------->TEIL        <---------ATHB51      <---------MYB59         ------->TEIL           <---------TOE2(3)      <      --------->WOX13(1)     ----------------->AGL1<---------YAB1     <----------DOF2  <---------ANAC46  ----------->GT1      --------->AHL20(2) ---------->DOF2<----------DOF2  <---------YAB1           --   tacatggtcaattataatgacaaaaaaaaataccaaatcagaacaaaagcaatatgaatctttatattagttctttattaatgtatattgtgtaaatttc  6601100                                                --------->AHL20(2)                                                --------->AHL20(1)        ----------->GT1     -------                                                <---------AHL20(2)       <---------ZAT6      ------->MYC3       --------->ANAC55(2)                     --------->AHL20(2)        ----------->GT1     <-------MYC3 ---------AHL20(2)              ---------->DOF2<---------AHL20(2)  --------->DAG2      --------->WRKY18(1) ------->AHL20(2)  ----------->GT1       --------->At4g35610      ---------->DOF2     <-----------HVH21   attttatatatgtaacaaaatgtgttattacttagaaagagatagctaaataatttgagagaaaaaaaaaaaggagagttaaatacacagtcaaacgtgg  6601200                                                                           <------------CBF                                                                          --------->ATHB12                                                                          --------->ATHB51                                                                         <---------YAB1                                                                         <---------AHL20(2)                                                                        <---------AHL20(1)                                --------->LBD16                        <---------------AGL15                               <---------ANAC58                    --------->AHL20(2)                               <---------ANAC46                    <---------AHL20(2)                               <---------ANAC58               <---------TOE1(2)                 ----- -->ALFIN1 ----------->GT1    <---------LBD16                 <---------TOE2(2)              --------   acgcttatttatctcgttaaaaatccatagtttgcgcgaaaaaacaaggcttcaaaagttttcccatgttttaatattattgggagagtgagaaataacc  6601300                                                                                      --------->AHL20(2)                           ----------->GT1                                        --------->AHL20(2)                          --------->DAG2                                          <---------AHL20(2)                         ---------->DOF2                                          --------->AHL20(1)  <----------ID1   ----------->GT1                                               --------->AHL20(2) -->GAMYB     ------------>CBF                                            ----------->GT1       ----- ->MYB52(1)   <---------ATHB12                          <------------CBF<------------CBF --------->TOE2(3)   gagaagaacaaatcaaatcaatagaaaaaaagtataaacaaaattcaaaactattcagtattgatatttgtttacattgaaaaaaaaattaacttaaaaa  6601400                                            <---------RVE1(1)                                            <---------CCA1(1)                                           <---------ARR11(3)                                           --------->ARR11(3)                  <-------TEIL               <----------ID1              <---------GLK1(2)                --------->At4g35610             ---------->DOF2     <------------CBF                           <---------At4g35610         --------->ANAC46      --------->AHL20(2)               <------ZmHOX2a(1)        <---------------AGL15  <---------AHL20(2)         <---------ZAT6  <-----------RAV1(2)        --------------->AGL15  --------->AHL20(1)     <---------ZAT14     <------NtERF2 ---->AHL20(2) ----------->GT1--------->AHL20(2)      --------->ZAT14   <---------ANAC46            -   atatagtttacacaaaaaagaaaaaccaaaaaaaaaattgttagagattttttcagagtagtgagaggaaaatggcgcagatgcagcgagaagaagtaga  6601500                                              ------>NtERF2                                              <---------RAP2.3(1)                                            <---------LBD16                                         ------>ZmHOX2a(2)                                       <---------ARR14(2)                                       --------->ARR14(2)                                       --------->ARR11(3)                                       <---------AGP1                                       <-----------ARR10                                       <---------ARR11(3)                                      <---------CCA1(2)                                     <---------MYB46(3)                                   <------NtERF2                                   --------->At5g28300                                   <-------GAMYB                                  <---------MYB46(3)     ======================================MYC_MYB                                      <------NtERF2     <---------TGA1a              <---------ORA47(2)          <---------ANAC58         --------->LBD16     ----------->HVH21           <---------DREB2C(2)        ------->GAMYB             --------->RAP2.3(2)     --------->O2                --------->ALFIN1        --------->MYB52(1)          --------->RAP2.3(1)     --------->TGA1a            --------->ATERF1(1)     <---------WRKY38(1)          <---------LBD16     =======================bZIP_DOF--------->ALFIN1  --------->ANAC58               <------NtERF2     <---------O2               <------NtERF2 --------->LBD16 <---------ANAC46     ------->GAMYB-----  ----------->HVH21           <---------DEAR3(1)      --------->ANAC58            --------->MYB46(3)  <---------MYB52(1)         --------->ATERF1(1)      --------->ANAC46         ---------->DOF2  <---- <-----------HVH21 --------->ICU4<---------DEAR3(1) <-----------RAV1(2)     ------->GAMYB<---------GLK1(2) -------->ANAC46 ---------->DOF2<---------ABI4(1)------>NtERF2<---------ANAC58--------->WRKY18(1)  --   gtccgtcacgacggagaagaaaagattagacggaggcggtggatcttccggcgctcaggcaacggcgttcaaattcaacgctcaagcgccggaatttgta  6601600                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  <--                          --------->LBD16                                                         <--                         --------->DEAR3(1)                                                       <--                      <---------ALFIN1                                                            <--                     <---------ABI4(2)                                                            <--                     --------->ZAT2                                                               ---                 ----------->RAV1(1)                                                              <--                 ======================RAV                                                        <--                 ===============================RAV                                               <--               --------->ZAT14                                                                    <--               <---------ZAT18                                                               <-------              <---------ALFIN1                                                               <-------              --------->AtMYB61                    <----------DOF2                         <------ZmHOX2a(1)             --------->ANAC46                  <---------MYB52(1)             --------->ABI4(2)------           --------->AtMYB61<---------TOE2(2)  --------->ARR14(2)             --------->MYB55(2)  <--           <---------ALFIN1<-----------RAV1(2)<---------MYB52(1)              --------->MYB52(2) <---   <------ZmHOX2a(2)--------->ANAC58       <---------LBD16                    <---------MYB46(3) ----  <-----------HVH21 --------->ANAC58   <-----------HVH21                     <---------AtMYB61 ------ ---->SPL7--------->MYB46(3)<---------TOE1(2)--------->LBD16     <---------YAB1<-------GAMYB<-------- -----At5g28300--------->ABI4(1)      ------>ZmHOX2a(1) <---------YAB1       --------->ALFIN1-------- ------->LBD16--------->DEAR3(1)    ----------->RAV1(2)<-----------GT1     ------->GAMYB<------ZmHOX2a(1)   ccgcgatcacataccaccgcaccagcaccgcaggtttctcctgtctccggttacttttatccttgttttcattacaacggtggttgcataggaggatgtg  6601700         --------->At4g35610         <---------At4g35610         <---------ZAT14       <---------DEAR3(1)      --------->ATERF1(1)   <------NtERF2   --------->ATERF1(1) <---------DEAR3(1) <---------ANAC46 ---------At4g35610 -------->At4g35610 ---------ABI4(1) ---------LBD16 -------->ATERF1(1) ------NtERF2 --------RAP2.6(1) ---->NtERF2 --------RRTF1(1) --------ATERF1(1) --------ERF1 --------RAP2.3(1) --------ORA47(2)                                                               <---------At4g35610 -------RRTF1(2)                                                                --------->ZAT14 -------RRTF1(3)                                                                <---------ZAT14 -------RAP2.3(3)                                           --------->ALFIN1------>ZmHOX2a(1) -------DREB2C(2)                                          --------->TOE1(2)========================= -------DEAR3(1)                                          <---------ANAC46------>ZmHOX2a(2) -------ATERF1(2)       --------->DEAR3(2)                <---------O2   <------ZmHOX2a(2) ------>ATERF1(2)     <---------PCF2                   ============================HOX2a_HOX2a -------ANAC58        <---------PCF5                   ==================HOX2a_HOX2a -------RAP2.3(2)     --------->TCP20                  ------>ZmHOX2a(2)--------->ARR14(2) -------ANAC46  --------->ALFIN1                       =====================HOX2a_HOX2a -------RAP2.6(2)    ----------->HVH21                <---------GLK1(1) <---------ARR14(2) --bZIP60(2) <---------AtMYB61                       <---------ARR11(3) --------->ARR11(3) ----RAV1(1) --------->ALFIN1<-------GAMYB           --------->ARR11(3) <---------ARR11(3) --->ALFIN1<---------ANAC46 <---------ANAC46         <---------ARR14(2)<---------GLK1(1) -------ANAC58--------->MYB55(2)                     --------->ARR14(2)--------->GLK1(1) ------ABI4(1)<---------MYB46(3)<------MYB46(1)      <---------AGP1  <------ZmHOX2a(1) ----->ATERF1(1)<---------ANAC46<------MYB83 <---------TOE1(2)    ==============HOX2a_HOX2a ----->HVH21 <---------DEAR3(1)<---------AtMYB61--------->ARR14(2)===============HOX2a_HOX2a        < -ARR14(2)<---------DEAR3(1)<---------DEAR3(1)  <---------ARR14(2)<------ZmHOX2a(1)  --------->At4g35610 ->ALFIN1<---------LBD16--------->ATERF1(1) <------NtERF2 --------->O2----------->ARR10          <---   gcggcggagtctgcggtggtggagggaccggcgttggtactcagtcgtcggattggatctacgtgggaggaggagatcctactgctcagcatcaacatgt  6601800                   <-----------GT1              <---------ANAC58              <---------ANAC46             <------NtERF2                  --------->ARR14(2)           <---------DEAR3(1)               <---------ARR14(2)          <---------At4g35610          <-------TEIL          --------->ZAT2             <-------GAMYB                                              -----          --------->At4g35610       <---------MYB46(3)                                         <-----          --------->ATERF1(1)       <---------DEAR3(2)                                         ------         <---------MYB46(3)        <---------DEAR3(1)                                          <-----         <---------RAP2.3(1)      <---------MYB52(1)                                       <---------At4g35610       <---------At4g35610       --------->LBD16                                      <----------DOF2    ------>ZmHOX2a(2)        <---------ARR14(2) --------->LBD16                 --------->ARR14(2)  - ==========HOX2a_HOX2a       --------->GLK1(2)  ------>NtERF2                   --------->GLK1(2)---- ---------YAB1<---------ANAC58 <---------LBD16<---------LBD16                   <---------ARR14(2) <- ----TEIL<---------ATERF1(1) --------->ARR14(2)<---------RAP2.6(2)             <---------GLK1(2)<----   tcatgatccagcggctgcgttttacatttcgaatccggcggttcagtttccggctagtcagaactcgtcttcttcgtcgaagaatctgctttccgatgat  6601900           ----------->GT1           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->ARR11(3)                                        --------->ARR11(3)         <---------ARR11(3)                                  <---------ANAC55(2)         --------->ARR14(2)                                  ----------->GT1         <---------ARR14(2)                                  <------MYB46(1)   <----------DOF2                                           <------MYB83   <---------DAG2                                           --------->MYB59 --------->LBD16                                         -------->HAHB4          <---------ICU4 ------>NtERF2                                           --------->ATHB12       --------->ICU4 ---->GLK1(1)                                            --------->YAB1       <---------ICU4 ------ARR10                                            <---------YAB1        --------->YAB1        < --->ARR11(3)                                          <---------TOE2(3)     --------->ICU4         - ----ARR11(3)                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(1)         ------>ZmHOX2a(2) -------->ANAC46             <---------DAG2           --------->YAB1         <---------ATHB12<------ZmHOX2a(2) -->ZmHOX2a(2)               <----------DOF2       <----------DOF2 <---------AHL20(1)       --------- --------LBD16            <-----------GT1          --------->TOE2(3)   ----------->GT1      --------- -----GLK1(1)        <---------GLK1(2)          <-----------GT1    <---------AHL20(2)       <--------   ctccgccttaagatcgtcaaacaggttttcacttttttttttttttttttttactttaatgataggtaaaatattgaaaatcattatgtcatgagatctt  6602000  Previous    Next  AGI:  At3g19090.1    Description:  RNA-binding protein, putative. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43970.1); similar to RNA-binding protein homolog [Brassica napus] (GB:AAF00075.2); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 6601472    to: 6603715    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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