Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->TOE2(3)                    --------->TOE1(3)            --------->GLK1(2)           --------->ARR14(2)                                                <---------ZAT14           <---------ARR14(2)                                            <------ZmHOX2a(1)           <---------GLK1(2)                                       <------ZmHOX2a(1)    --------->WRKY38(1)                         --------->YAB1------------------------>ANAC81   aactcgttcaccagattccaaaccttgaaaaccctcaatttcgcacaaaatcaaaactttgaaagatgaggagaaggagaacagagagagagagagagag  6551500                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                 <------NtERF2                                                               <---------bZIP60(2)                                                               <---------ANAC58       ----------->HVH21                                                               --------->ALFIN1       ----------->TGA1                      <---------ANAC58                         <---------ANAC58   <---------ZAT14                      <---------ANAC46                         <---------ANAC46   --------->ZAT14         -------->P   <---------ANAC58                   ---------->DOF2         --------->MYB52(1)        <-----------GT1                            --------->HSFB2a(2)           ----------->RAV1(1)-  ------------>MYB.PH3(2)       <---------MYB46(3) <---------HSFB2a(2)        --------->ANAC46  -----   agagagtaagttaccagacgtttttcttggatagtggatgagaaaatcaacttatggaagaaagggcgtggcatgttcagacacaacagtgacgaagtaa  6551600                                                         <---------------------WRI1                                                        ------>NtERF2                                                   --------->DEAR3(2)                                            <------ZmHOX2a(2)                                            ==================================HOX2a_HOX2a                                           --------->ARR11(3)                ------------------------>ANAC81<---------YAB1                >>>>>>>>>TBF1              <---------ARR11(3)          <------ZmHOX2a(1)          >>>>>>>>>TBF1                   <---------At4g35610         <----------ID1 -------->AHL20(2) >>>>>>>>>TBF1          --------->At4g35610      ---------->DOF2 ------>GT1  >>>>>>>>>TBF1            <-----------HVH21--------->DEAR3(1) ---------->DOF2    >>>>>>>>   gaaaaaatagaagaagaagaagaagaagagaagaccagagagtcagatcatgaaacgacgacggagaataaaaggacaaagagactaagagagaagaaga  6551700               <------ZmHOX2a(1)          ----------->HVH21         ------>ZmHOX2a(2)         =============HOX2a_HOX2a        --------->CCA1(2)        <------ZmHOX2a(2)        ==============HOX2a_HOX2a       --------->ARR14(2)       <---------ARR11(3)                                                                     =======       <---------ARR14(2)             <-------TEIL         ----------->GT1                    <------       <---------AGP1             --------->DAG2      ---------->DOF2                     <----------DOF2       --------->AGP1            ---------->DOF2     <---------WRKY45                     ===========       --------->ARR11(3) <---------ANAC46           <---------WRKY12                 <----------DOF2  <-----------HVH21       ----------->GT1            <---------WRKY38(1)              =============== <----------DOF2     <-----------RAV1(1)     --------->ARR11(3)                  <----------DOF2   <- >TBF1<---------CCA1(2)   <---------ZAT6     <---------ARR11(3) --------->REM1(1)====================   accctttcagatctgaaggagttttgttgtgttaaaaaagttcattagattttagtcaaaggggttacaacacaacaatctctcttttctttctttcttt  6551800            ----------->HVH21    --------->TOE1(2)       ----------->HVH21      ------>MYB83     ==============================MYC_MYB     --------->O2           --------->AtMYB61     <---------At4g35610    ------->GAMYB     <---------O2           <---------MYB59     --------->TGA1a       --------->MYB46(3)     ===============================MYC_MYB     --------->At4g35610  --------->ANAC58     <---------TGA1a      ------>MYB83     ----------->RAV1(2)  -------->P   --------->ANAC46       ------>MYB46(1)          --------->AHL20(2)   <---------ALFIN1       --------->ANAC58         <---------AHL20(2) ==============bZIP_DOF  ------>MYB83            ------------------------>ANAC81 ----DOF2 --------->At4g35610 ------>MYB46(1)  --------->ICU4 ==============bZIP_DOF  ------>MYB46(1)       <---------AHL20(2)              --------->YAB1    xxxx ==============bZIP_DOF<---------MYB59         --------->AHL20(2)        ------>MYB83     <---------ZAT2 ----------GT1     ----------->HVH21      ----------->GT1  *TSS          ------>MYB46(1)  --------->ZAT2 ==============bZIP_DOF--------->MYB46(3)------------------------>ANAC81 -------->P      ------->TEIL   tttacacacctgacctgaagagtgacccaaccaaacccaagaagatgaaaaaattaaaaaaaaaaaaaaaaaaccaacttgtcataaaacgaagctcgag  6551900                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                               ------                                                                                             --------                                                                                             <------NtERF2                                                                                            ------>NtERF2                                                                                           <---------TCP20                                                                                           --------->DEAR3(1)                                                                                           --------->RAP2.3(3)                                                                                           --------->RAP2.3(2)                                                    ======================bZIP_DOF       --------->ABI4(1)                                                    ======================bZIP_DOF       <---------ATERF1(1)                                                    <---------TGA1a                     <---------ATERF1(1)                                                    --------->O2                        --------->AtMYB61                                                    <---------O2                        ------->GAMYB                                                    --------->TGA1a                     --------->RAP2.6(2)                                               <---------ZAT18                          --------->DEAR3(1)                                              <-----------HVH21                        --------->DEAR3(2)                                             <------MYB46(1)                           --------->SPL7                                             <------MYB83                              --------->MYB46(3)                                            --------->MYB59                           --------->ATERF1(1)                                            <---------MYB46(3)                       ------>NtERF2 --                                            --------->MYB46(2)                      ----------->HVH21                                           <---------MYB55(1)                --------->YAB1--------->PCF2               <---------At4g35610         <--------P            <---------AHL20(2) --------->DEAR3(1)               --------->ZAT2              ===================MYC_MYB <-----------GT1<---------ATERF1(1)               --------->At4g35610        <---------MYB52(1)     --------->AHL20(2)--------->DEAR3(2)               <---------ZAT2   <---------ANAC46    ============================================MYC_MYB     ------->TEIL     --------->ZAT14 --------->ARR14(2)       <----------DOF2 ---------->DOF2<------ xxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ARR14(2)<---------AtMYB61   <---------ATHB12<--------   cgagttgaatctgtgttagctcggtagactcgttgagtcgaatcggtaggtcactcgtgtggtttcttttattaactaatcaaaagccgaccgcccccac  6552000      <---------DAG2      <----------DOF2     <---------DAG2                                                          --------->ATHB51 ---------ALFIN1                                                         --------->ARR11(3) ---->MYB46(1)                                                           --------->AHL20(2) ------>P                                                                <---------ARR11(3)        <- ------MYB111(1)                                                         --------->AHL20(1)       --- ----->AtMYB61                                               <---------ARR11(3)                   <-- ------MYB111(2)                                       --------->ANAC58  <---------AHL20(2)       --- ------MYB46(2)                                        --------->ANAC46  <---------AHL20(1)       <-- >NtERF2                                               --------->ANAC58 --------->AHL20(2)        --- ->MYB46(3)                                            <---------ANAC55(2)   --------->ATHB12     <-- ---->MYB83                 --------->TOE2(3)          --------->ANAC55(2)  <---------YAB1<----------ID1 ---ALFIN1                <-----------GT1              --------->ANAC55(1)  <---------AHL20(2)   ---- -ATERF1(1)        <----------DOF2         <----------DOF2   --------->ARR11(3)         --------->YAB1   ctactcccctttttcgaccatctttttttttcttaacaaatatttcttttttgtaacacgcaatatctcagaaaatatattattgccttataacaacaaa  6552100                                                    --------->LBD16                                                   <---------HSFB2a(2)                                                   --------->HSFB2a(2)                                                   <---------ANAC46         <---------ZAT6                            <---------ANAC55(2)         ----------->GT1                          <---------LBD16 <---------AHL20(1) --------AHL20(2)                               <---------ARR14(2)--------->AHL20(2) ------>AHL20(1)                                <---------MYB52(1)--------->AHL20(1) -------ARR11(3)         ======================HOX2a_HOX2a --------->TOE2(3) ------>ARR11(3)         ------>ZmHOX2a(1)      --------->ARR14(2)<---------AHL20(2) -------AHL20(2)         --------->ICU4        <---------SPL7    --------->AHL20(2) ------>AHL20(2)    --------->ANAC46    <------ZmHOX2a(2)--------->ARR11(3) -------AHL20(1)   <-------TEIL        --------->ARR11(3)--------->GLK1(2) ----->AHL20(2)   <-----------GT1      <---------ARR11(3)<---------ARR11(3)                         <   tatatttgatactgttatatatacgtccttatttgcaaacagatcataccgttccggaaaatctcaattttatttagaacatataaaaacacttgtaaac  6552200        --------->REM1(2)     <---------ANAC46     <---------ANAC58     <---------ANAC58   ------->TEIL --------->ZAT14                                                                              ------- --------->ZAT18                                                       <---------YAB1        <------- <---------ZAT14                                              ---------->DOF2         ----------->RAV1(1) ---------ZAT6                   ---------->DOF2         ---------->DOF2--------->YAB1<---------ALFIN1   tagtgtaccgtgaagcctatagacaaatataggtggaaaggaaaacaaaactggtctccaaaagaaaagtcttatcataaactcatgcccacagtattaa  6552300                                                                                          <---------ICU4                                                                                         <-------TEIL                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                 <-------TEIL                                                                                 ------->TEIL     ------->TEIL                           --------->GLK1(1)                <---------------AtSPL3 -->ICU4                                    <---------GLK1(1)       --------->ATHB12 ------->TEIL --- --YAB1                 ----------->GT1----------->GT1     ----------->GT1----------->RAV1(1)    ----   tggtatgtatatacttagagaatgacaagttaaaacatgtatagagaaatccaaatacaacatgtataatcgattgcaacatgtacgtatattcatggct  6552400  Previous    Next  AGI:  At3g18990.1    Description:  VRN1 (REDUCED VERNALIZATION RESPONSE 1). similar to RTV1 (RELATED TO VERNALIZATION1 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G49480.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 6548875    to: 6551859    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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