Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         ------->TEIL                                       <-----------ARR10                                       --------->GLK1(2)                                       <---------ARR14(2)                                       <---------ARR11(1)                                       --------->ARR14(2)          <----------DOF2                                      <---------CCA1(2)          --------->At4g35610                   <---------ICU4     <---------ARR14(1)    <-----------GT1                  --------->ICU4--------->DOF5.7(2)--------->At4g35610      <---------ICU4                  <---------ATHB51<---------DOF5.7(2)      <---------AHL20(2)  <-----------GT1         --------->REM1(2)      <---------MYB52(1) <---------At4g35610--------->YAB1               --   gagagtctccttgtacagaaattatggcacaagcgttagcgaatcttcagtttagctggattttatcagctatattgatttttacatttgtattctctct  6542100                                              --------->TOE2(3)                                              --------->TOE1(3)                                            <---------TOE1(3)                                           <---------DOF5.7(2)                                          <---------WRKY38(1)                   <---------ANAC46       <---------WRKY12                  <------NtERF2           <---------WRKY45           ---------->DOF2               --------->DOF5.7(2)                                  <------        --------->LBD16                <---------ETT(2)                                       <------       --------->HSFB2a(2)            --------->SPL7                                          <------       <---------HSFB2a(2)           <---------MYB52(1)                            ------>ZmHOX2a(2)       <---------LBD16             --------->ATERF1(2)                         ----------->HVH21      <---------LBD16              <---------ATERF1(2)     ----------->GT1  --------->ALFIN1  <------      <---------ANAC46             <---------DREB2C(2)     --------->ANAC58<------ZmHOX2a(1)<--------     <---------LBD16              <---------ANAC58         --------->ANAC58===============HOX2a_HOX2a -------->DOF2  <---------DEAR3(1)<---------ANAC58        ------->TEIL   --------->ALFIN1  <---------   caaaagtttcggggaaagtcgccgtgtttcccaattgccggtcgtcaacgttagaatacgaacgtaattttcgacgaggaggtgatcgttctactgtcgt  6542200                                                                                       <------MYB46(1)                                                                                      --------->MYB111(1)                          --------->AHL20(2)                                          <---------MYB46(3)                          <---------AHL20(1)                                          --------->MYB111(2)                          --------->AHL20(1)                                          --------->MYB46(2)                          <---------AHL20(2)                                          --------->MYB59                          <---------ARR11(3)                                         <--------P --------->HSFC1(2)       --------->ARR11(3)                                         <---------MYB55(1) --------->HSFB2a(1)<---------HSFB2a(2)                                <---------AHL20(2) <---------HSFC1(2) --------->HSFB2a(2)                               <---------AHL20(2) <---------HSFB2a(1)--------->HSFC1(1)                                <---------AHL20(1) ---bZIP60(2)  <----------DOF2               <---------AHL20(2)       --------->AHL20(1) ---ANAC58     ------>ZmHOX2a(1)     ----------->GT1                  --------->ARR11(3)            < ---ANAC46 --------->ARR14(2)        <---------ANAC46                 <---------ARR11(3)         <--- ---ANAC58 --------->GLK1(2)    <---------ANAC58      <---------YAB1  --------->AHL20(2)      <------ ---HVH21  ------->TEIL --------->GLK1(2)   --------->YAB1     ----------->GT1      <---------MYB52(1) --RAV1(1) <---------ARR14(2)   <---------ANAC58<---------TOE2(3)    --------->AHL20(2)<------MYB83 -   ggaagcctcgacgaatccttttcgagaatatatttcgtctcgtttatattaatgttgtaatagtatagaaaatatattttgttatcggtaggtaagcttt  6542300                                                                                                 ----                    <---------YAB1                                                     <---------AHL20(2)                  <----------DOF2                                                  <---------RVE1(1)          ------->TEIL                                                             <---------CCA1(1)       <---------REM1(1)          <---------REM1(1)                               --------->ARR11(3)      <---------TOE2(3)<---------WOX13(1)                                 --------->GLK1(1)      <--- ---------------AGL15 >>>>>>>>>ARR2                           --------->YAB1      <---------ARR11(3) --------GT1<---------MYB52(2)  <---------ANAC46       <---------MYB46(3)--------->ARR14(2) <-------- ----DOF2 <-----------GT1    ----------->HVH21     >>>>>>>>>EIN3  ---------->DOF2--------->YAB1 <---- -------------->AGL15--------->ATHB12            <<<<<<<<<<<<<<<<<LFY    <---------ARR14(2) ---------   tactatttgatgtaactagcctttgattgttatgacatgtagcaacgaattatacattggttattgataaaagcgtatttccatgatattttttttaatt  6542400                                 --------->YAB1                                                   ---                              --------->YAB1                                                      ---                              <---------ICU4                                                    -----      ----------->GT1         <--------ATHB1                                                --------- ----->AHL20(2)              <---------ATHB51                                       --------->ANAC58 ------AHL20(2)              <---------ATHB12                                       --------->ANAC46 -AHL20(2)                   --------->ICU4                        <---------AHL20(2)       <-------- -----AHL20(2)           ------------>CBF                    ----------->GT1        --------->ANAC58 >AHL20(2)              --------->TOE2(3)                <---------ZAT14            <----------ID1---   tatatacaaggtttatactggtataacttcaataatggtaagacttatcttttgactagagaactgtataaaatgagtcttggaaaacgacatagagtta  6542500                                                                 --------->YAB1                                                                 <---------ICU4                                                        --------->ZAT6    <----------DOF2                             --------->LBD16 <---------ATHB12 ------>ANAC46                                  ------>NtERF2  --------->ANAC46 ------>ANAC58      <---------At4g35610        <---------RAP2.6(2) ----->DOF2         ----------->GT1           <---------LBD16<---------ALFIN1           <-----------GT1 -->GT1         <-----------HVH21   --------->ARR14(2)<-----------GT1                 <-----------GT1 -ZAT6 <-----------HVH21       --------->MYB52(1)  <----------DOF2        --------->ZAT14 ------>ANAC58 *TSS --------->At4g35610   <----------DOF2   --------->ZAT14<---------ALFIN1<---------DAG2   aagcaactttgtcactcttgtcagataaaaacttatcggtttctcttttccggctttaactctccactcatcactctccactctcaattttcaccttctc  6542600                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3)                                                                                    <---------GLK1(2)                                                                                    <---------ARR14(2)                                                                                    --------->ARR11(3)                                                                                    --------->AGP1                                                                       --------->DEAR3(1)      ------                                                                     --------->ABI4(1)        <------                                                                     ------>NtERF2  --------->ARR14(3)                                                                    --------->DEAR3(1)  ------>ZmHOX2a(1)                                                                   --------->MYB46(3) ------>ZmHOX2a(2)                                                                  <---------At5g28300 ----------->RAV1(2)                                                      --------->At4g35610 =====================HOX2a_HOX2a                      ----------->GT1                 <---------At4g35610 <------ZmHOX2a(2)  <-------             --------->ANAC58          --------->ANAC58      <-----------ARR10      <---------ARR14(3)             --------->ANAC58          --------->ANAC46     <---------CCA1(2)     ----------->ARR10        --------->ANAC58               --------->ANAC58--------->DEAR3(1)<-----------HVH21  ---------        --------->ANAC58       ------->GAMYB      <-----------HVH21--------->DEAR3(2)<------ZmHOX2a(2)   ttctctgaacaaggcaaacaaaaatggttacaacccaaaacacgaaggccagagtcacctccgtctctcaccgccgatcacagcaagatcctgagtcgcc  6542700       <---------ARR11(3)       --------->ARR14(2)       <---------ARR14(2)       --------->ARR11(3)                                                                         --- ----->LBD16                                               <---------ANAC55(2)                    --- -----DEAR3(1)                                             --------->ANAC55(2)                    <-- ----LBD16                                               <---------AHL20(2)                       <-- -NtERF2                                              <---------ICU4                           <----- --->ATERF1(1)            --------->TOE2(3)        ----------->GT1                             <----- ---RAP2.3(1)     <------MYB83          <------ZmHOX2a(1)<-----------GT1                       <----- --DEAR3(1)       <------MYB46(1)     <---------TOE2(3)  --------->AHL20(2)           --------->DAG2 >ATERF1(1)     <--------P--------->TOE1(3)    <---------YAB1   --------->ZAT6       ---------->DOF2   ggtgaagaagttcttcaagttggtcttaccttcaacgatgaaggataagatgatggtaattacttaacacttagaaaaaacttgaaataaagtgtttgca  6542800                                                                                                    <                                                                                                    -                                                                                              -------                                                  --------->ZAT14                          ------>ZmHOX2a(2)                                                  <---------ZAT14                         --------->CCA1(2)  <-------GAMYB                                 --------->ANAC46                          <------ZmHOX2a(2) ---->MYC2                                    <-----------GT1                            --------->AGP1 ---->MYC3                                   <-------TEIL                                >>>>>>>>>GATA-3 -----MYC2                                 <---------ARR14(2)                            >>>>>>>>>GATA-1 -----MYC3                                 --------->ARR14(2)                            <---------ARR11(3) ----ANAC58                        <---------ARR11(3)                                    --------->ARR11(3) ----AtLEC2                        --------->ARR14(2)                                    >>>>>>>>>GATA-2 ----ANAC58                       <---------CCA1(2)               <----------DOF2        >>>>>>>>>GATA-4   tgtgtgttgttatccctgtttcaatttctagggactatatctgaagattcactaaacagtgtccatttcttttgttttatcttggactagagatctaaaa  6542900                                                               <---------ANAC58                                                               <---------ANAC58                                                               <---------ANAC55(2)                                                               <---------ANAC46                                                               <---------ANAC55(1)                                                  ----------->HVH21                                                 ------>ZmHOX2a(2)                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                                --------->At4g35610                                               <---------AGP1  --------->ANAC55(2)        --------->GLK1(2)                      --------->AGP1 --------->MYB52(2)  <-------TEIL --------->ATHB12                <---------ARR11(3)                    <---------YAB1 --------->CCA1(2)                             --------->ARR11(3)           --------->GLK1(2) ---------ARR14(2)                             <---------ARR14(2)           <-----------ARR10 -------->ARR14(2)                             --------->ARR14(2)           --------->ARR11(3) --->DOF2     <---------YAB1            --------->GLK1(2)    <-----------GT1<---------ARR11(3)  <----   gggatacactaatctgatcatttgttcttaagaaatgtagagaatttaagatctgacattttgttacttgtttctgaaaatctcattatgttgaataact  6543000  Previous    Next  AGI:  At3g18955.1    Description:  pseudogene, hypothetical protein Range:  from: 6541304    to: 6542234    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18960.1    Description:  transcriptional factor B3 family protein. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT4G01580.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82368.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 6542515    to: 6543682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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