Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                       <---------ANAC46                                                                                       <---------ANAC55(1)                                                                                       <---------ANAC58                                        --------->ZAT14                           <---------ICU4                                        --------->ZAT18                          ------>ZmHOX2a(1)                                        <---------ZAT14                          <---------YAB1                                       <---------ZAT6                            --------->ICU4 <----                   --------->YAB1    <---------ANAC46                          ----------->RAV1(2)           <---------HSFC1(2)      <---------ZAT14        <---------ARR11(3) ------>ZmHOX2a(2)-------       ----------->GT1       ---------->DOF2              --------->ARR11(3)<---------GLK1(1)<-------   --------->GLK1(2)      --------->WOX13(1)   <----------DOF2        --------->GLK1(1)<---------ANAC58   cagagaatgtggtaacttcgaacataatccatcaagctgtagtgtagtgctttagtagatgatattgatcagatttcgatctcctgattacttgtataat  6510600   --------->ARR14(2)   <---------ARR14(2)   ------->TEIL                                   --------->ZAT6                   ------>MYB46(1) --YAB1--------->LBD16                          <-----------GT1                    ------>MYB83 -----WOX13(1)                                <-----------GT1              ---------->DOF2 -->ATHB51                                   <---------ICU4    --------->DAG2      -------->P --AHL20(2)      <---------GLK1(2)   <---------YAB1           ---------->DOF2    --------->AtMYB61   tgatgaatccgaagttacagattatctattgaaagtttgatgaataattttcactctagcgaaaaaaagctaattcaaaaagaccaacaagtttacagag  6510700            <-----------ARR10                                                                   <----            <---------ARR11(3)                                                               <-------            --------->ARR11(3)                                                               --------            --------->GLK1(2)                                                        --------->ANAC58     <------MYB46(1)                      ------>MYB46(1)                            --------->ANAC46     <------MYB83  --------->YAB1         ------>MYB83                               --------->ANAC58    <---------AtMYB61                   <---------MYB59                      ---------->DOF2 -------- <-----------RAV1(1)                    --------->AtMYB61     --------->CCA1(2)    <---------DOF5.7(2)   attgtgttggtcaaaatctattcataagtgatgttaagaagaccaaacttactcatctaattggatataagcatttggagaaagtaaacgccaatatgta  6510800                                                                                    <---------MYB52(2)                                                                <---------ANAC46    --------->MYB46(3)                                                         <---------GLK1(2)     <---------HSFB2a(2)                       ---------->DOF2                  -------->HAHB4         --------->HSFB2a(2)                   ----------->RAV1(1)                 <---------ATHB12------>ZmHOX2a(2)                   ------>NtERF2                       <---------YAB1 <------ZmHOX2a(2)    ------>MYB46(1) -------GT1       --------->DEAR3(1)                   --------->ICU4--------->ARR14(2)    ------>MYB83 --ANAC55(2)--------->ARR14(2)                  ==============================HOX2a_HOX2a  --------->MYB52(1) ->ANAC55(2)<---------ARR14(2)                  =============================HOX2a_HOX2a <---------MYB59 --->GT1    --------->GLK1(2)                   ------>ZmHOX2a(1)    <---------ARR14(2)  --------->AtMYB61   acaatgcatataagaatccagcgccaaaagtattcaaattctaatgtgtcctatgaaatgattctggtttggatccaagttttggaacaaaccaaaccga  6510900                                                                    --------->YAB1                                                                   <---------ATHB12                                                              --------->PCF2                                                              <---------TCP15(1)                                                             <---------PCF2                 <---------ZAT18       <------MYB83          --------->TCP15(1)                 --------->ZAT14       <------MYB46(1)       --------->TCP20               <---------At4g35610   <---------WOX13(1)      <-----------HVH21               --------->At4g35610  <------------CBF        <---------TCP15(2)            --------->ANAC46           <-----------HVH21       --------->ATHB12       --------->ALFIN1                --------->ANAC58          --------->O2  --------->WOX13(1)              <---------ANAC46                  --------->ANAC58          --------->TGA1a <---------ATHB12  <---------ANAC46<---------TCP23        --------->ALFIN1          --------->bZIP60(2)   <------------CBF        <-----------RAV1(1)    <-------TEIL   attagccttgccatgtcagcatactccaatcaaacattgattggtctcttgtaatgttatgtgggtcccatcatatcaagatgcagtggcagacgcagta  6511000                                     <---------AHL20(2)                                    <---------AHL20(2)                               <---------ARR11(3)                               --------->ARR11(3)           ------>ZmHOX2a(1)                              --------->YAB1                <---------At4g35610  ------>ZmHOX2a(2)                             *TSS   <---------AHL20(1)      ============================HOX2a_HOX2a                           ---------->DOF2           ===================================HOX2a_HOX2a                        --------->TOE2(3)            ------>ZmHOX2a(1)       ----------->HVH21                <------------CBF    --------->AHL20(2) <----------DOF2 <----------DOF2           <---             ------------>CBF----------->GT1     <-----------GT1   --------->GLK1(2)<---------ZAT18   gaactcttgctgagtctcaattgtatccataaagataataaaatttgtatatttcctctttcctctgagattcctttgtctgatcgtgaacttgtagtag  6511100     <---------YAB1   <---------ANAC46                                                                            <-----   --------->ANAC55(2)                   --------->STY1(2)                     --------->ARR11(3)   <---------ANAC58                      <---------STY1(2)     --------->MYB52(1)            --------   <---------ANAC58            <-------TEIL           >>>>>>>>>TBF1 <---------TOE2(3)       <-------- ------ZAT6         ---------->DOF2 --------->ZAT6 >>>>>>>>>TBF1  --------------->AGL15    <---------LBD16   tgttttcgtgatagaaaattttcaaagttaatgtgcatacactagctagtgaagaagaagaagactaactaagaatggaaggaacttgttttctccgtgg  6511200                                                                            >>>>>>>GRF7                                                                           <-----------RAV1(2)                                                                         <-----------HVH21                                                                      <---------ARR14(2)                                  ---------->DOF2                     <---------GLK1(2)                             --------->ZAT2                           --------->ARR14(2)                             <---------ZAT2                      ------>MYB83                 <------ ----ETT(2)                  --------->At4g35610                 ------>MYB46(1)            <-------- ->LBD16                     <---------At4g35610               --------->AtMYB61    <---------TOE2(3) -ANAC46                    ----------->RAV1(1)   ---------->DOF2--------->MYB52(1) <---------TOE1(3)   acaacctctcacaacaataccctctcttcccagcagaaaagggtttcttctccaaagatggaagaccaatcggattgtcaggttttcaggttttaagaat  6511300                    <---------ARR11(3)                    --------->ARR11(3)        --------->HSFB2a(2)        --------->HSFC1(1)        <---------HSFC1(1)    ------>ZmHOX2a(2)                                  --------->ZAT6       <---------LBD16 <----------DOF2                                 <---------DAG2 ---ICU4<---------HSFB2a(2) --------->ARR11(3)             ---------->DOF2 <---------YAB1       <---- -TOE2(3)  ---------->DOF2  <---------ARR11(3)<-----------RAV1(2)      <----------DOF2       ------->TEIL   cactcggtttctggaaagtcgaggtctttcgatcttagcctcagagcttcaggtactactaaaaagtttcaagctttttgattacactacttctgcatct  6511400                     <---------ANAC46                     <---------ANAC58                     <---------ANAC58                 <---------DAG2                 <----------DOF2                                                <---------ANAC58        <----------DOF2                                                         <---------ANAC58 <------------------------ANAC81                                     <---------DAG2            <----- <<<<<<<<<<MYB80<---------ANAC58       --------->HSFB2a(2)           <----------DOF2     <---------At4g35610 ------DOF2     <---------ANAC58  <----------DOF2                 --------->ZAT6<---------ANAC46   tttggtttgactttgtttgcttttcgtgaaatgggactttgctcgaacgtgattcgcttcttctcttaacactttatctgtgtcttgtttttgctgatgg  6511500  Previous    Next  AGI:  At3g18880.1    Description:  ribosomal protein S17 family protein. similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45477.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45488.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) Range:  from: 6509546    to: 6510631    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18890.1    Description:  binding / catalytic/ coenzyme binding. similar to flavin reductase-related [Arabidopsis thaliana] (TAIR:AT2G34460.1); similar to catalytic/coenzyme binding protein [Brassica rapa] (GB:ABV89636.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 6511029    to: 6515000    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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