Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                             <------NtERF2                                                                                             --------                                                                                           <---------ANAC46     --------->ZAT2                                                      <---------ETT(2)  <---------ANAC58     <---------ZAT2                                                      --------->ETT(2)  --------->ALFIN1 ------>At4g35610                                        <---------DEAR3(1)      <------ZmHOX2a(1)<-- -------At4g35610                                 --------->ETT(2)    <---------ANAC46     <---------TGA1a -->LBD16                               <---------ZAT14  --------->ZAT18 <---------ZAT14   <---------ANAC58 -LBD16                            ------>ZmHOX2a(2)    --------->ALFIN1 --------->ZAT14   ========== >At4g35610 <---------DEAR3(2)   <---------ARR14(2) =================================================bZIP_DOF -At4g35610<---------DEAR3(1)    --------->ARR14(2) ---------->DOF2 --------->At4g35610    <---------O2   agctccaagctcgccggtgagaaaatcgaagacgggatcgagtttagagatgtcgaaagtgggcgagaagagctgtggacagaggaaaacgaggcgtggg  6509100             --------->GLK1(2)           --------->HSFB2a(1)           --------->HSFC1(2)             <------NtERF2           <---------HSFB2a(1)          <---------DEAR3(1)               <------ZmHOX2a(1)       <---------DEAR3(1)               <---------ANAC46      --------->KAN4(2)     <-----------HVH21                 <---------LBD16      <------ZmHOX2a(2)          --------->GLK1(2) ---------HSFB2a(1)                  --------->ANAC46       ====================HOX2a_HOX2a   <------ZmHOX2a(1) ------->ARR11(3)                   <---------LBD16         <---------YAB1            --------->ARR14(2) --------ARR11(3)                 <-------TEIL             <---------ARR11(3)    <---------LBD16 ------->ARR14(2)                --------->CCA1(2)         --------->ARR11(3)    <---------ANAC46 --------ARR14(2)               <---------ARR14(2)   ------->GAMYB   --------->LBD16  <---------ARR14(2) ------>GLK1(1)               ----------->ARR10====================HOX2a_HOX2a  --------->ALFIN1 ->ALFIN1<------NtERF2       <------ZmHOX2a(1) <------ZmHOX2a(1)   <---------LBD16<---------LBD16 -------GLK1(1)  <----------DOF2--------->ARR14(2)--------->MYB52(1)--------->DEAR3(1)<---------GLK1(2) ===========================bZIP_DOF<---------At5g28300---------->DOF2<------NtERF2<------NtERF2   aaatcttcgtcggagattcctttcgatttgaggagattcacggcggagaggataacggaaagatcattcgccggaggagcaagtcggggattctgaggaa  6509200                                   --------->ALFIN1                               <---------At5g28300                         <---------ARR11(3)                         --------->ARR11(3)                         <---------GLK1(2)                                    <------ZmHOX2a(1)              --------->DAG2   <---------LBD16                          <----------DOF2        ------            ---------->DOF2   <-----------GT1                        --------->ARR11(3)<------ZmHOX2a(1)    --------->LBD16 <---------ANAC46                            <---------ANAC46    <------ZmHOX2a(1)   caattccgagagaagaaaggtgtcttagattttcacggtgtgaggtttggaattttagatagagaggcttagagcttgaaggagaaggaggagacgagaa  6509300                                    ------->GAMYB                                   --------->MYB46(3)                                      <---------CCA1(2)                                 --------->YAB1                                        <-----------TBP                                 --------->MYB52(1)                                 --------->AHL20(2)                           --------->ANAC58                               --------->LBD16--------->AHL20(2)                           --------->ANAC58      *TSS                    <---------LBD16 <---------AHL20(2) ---->DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------YAB1 <-----------GT1       <---------AHL20(2)   agacgagagaggttgaagatgatgaagtgaagcaataacagccatatcgatgattcttcacttcttacttctcatcccggttcgattttatttatatctg  6509400                                                                                       <---------At4g35610                                                  <---------MYB52(1)                   --------->At4g35610                                             --------->ARR14(2)                        <-------------                                             <---------ARR14(2)                <---------AHL20(2)                                           <---------DEAR3(2)           --------->TOE2(3)                                          <---------DEAR3(1)          ------->TEIL<------------CBF                  <----------DOF2       ------>NtERF2      <---------ZAT14     --------->AHL20(2) ---   ttaaataaaccagaaattagcttttgaagcggtttagtatgaggccggttctgttaactactatacttcatggaccttaatataaattgggctgagataa  6509500            <---------YAB1            ----------->TBP          --------->YAB1         <---------YAB1       --------->YAB1                         *TSS       <--------HAHB4                       <----------DOF2       <---------ICU4                   ---------->ID1      <---------ATHB12              <----------DOF2      <---------YAB1             <---------ARR11(3)                                  <------ZmHOX2a(1)      --------->ICU4             --------->GLK1(2)      <---------GLK1(2)        <---------MYB52(1) --------WRI1                    --------->ARR11(3)   ----------->ARR10     <---------ZAT2          - ------->DOF2                   <---------GLK1(2)  <----------DOF2   --------->LBD16----------->GT1 <   caaagcccatcattataaaacccctagaccagaagaatctttttctctttgctctttagattctcaaaatccagagagagctcgttaggaaaaatgaagg  6509600                                                --------->ATERF1(1)                                             <--------P                                           <---------MYB46(3)                                          <---------AtMYB61                                        --------->MYB55(2)                                       <---------AtMYB61                                       --------->ALFIN1                                       <---------DEAR3(1)                                      <-------GAMYB ----------->HVH21                                     <---------DEAR3(2)                                    <---------DREB2C(2)                                    <---------DEAR3(1)                                    <---------At1g77200                                    <---------DEAR4(1)                                   --------->DDF1--------->DEAR3(1)       <---------ARR11(3)      ---                                  <-----------HVH21 --------->ETT(2)      --------->ARR11(3)    <----            --------->ALFIN1     <-----------RAV1(1)<---------ETT(2)     --------->CCA1(1)      ----- --------->ATHB12        ---------->DOF2<---------MYB46(3)<---------GLK1(2)                    <----- ---------->HVH21<------NtERF2 --------->At4g35610 <------NtERF2       --------->YAB1          <----- ---------ZAT6 <---------ANAC46<---------At4g35610<---------ATERF1(1)  --------->AHL20(2)<-----------HVH21   cagtgatagggacagtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaataatatctacaatcgatatgtcaagcg  6509700                                                          <-----------GT1                                                         <-----------GT1                                                      <---------ARR14(2)        <-------TEIL              ------>ZmHOX2a(1)   --------->ARR14(2) ------>SPL7                      =====================HOX2a_HOX2a -----ZAT18                     ----------->RAV1(2)   <-----------ARR10 ---->ZAT18                 <------ZmHOX2a(1)   <------ZmHOX2a(2) ----ANAC58                 ===========================HOX2a_HOX2a                               ---- ----ANAC58             ---------->DOF2   <---------DEAR3(1)                        <-------TEIL <---   tacttccaagttcatggctcacgatgaaaaggactcctgtaacatcggcgatcgagtattttccccttcattttttgaatttgatatacatttgatcaag  6509800                                                                                                   <-                                                                                                   <-                                                                 <---------YAB1                    <-                                                               <---------MYB46(3)                 <--                       <------ZmHOX2a(1)                     <---------MYB52(1)                   <-- ----------->GT1    <---------HSFB2a(2) --------->ATHB12 <---------ANAC58                        <--- ----->ARR11(3)  --------->ARR11(3)    <---------ATHB12  <---------ANAC46               ------->TEIL ------ARR11(3) --------->At4g35610    --------->MYB46(3)<---------ANAC58    <----------DOF2 --------   agctcgaaaatttagggaagctctaggaatatttgaactcaaccattggaagtagacttgcctgtttgttattaggctgctttggaaatgaaacttgatt  6509900   <---------ANAC46         ------>ZmHOX2a(2) <---------MYB46(3)       <---------ARR14(2)                                            --------->ANAC46 --------ANAC58           --------->ARR14(2)                                      ---------->DOF2 ------GAMYB   <------MYB83<------ZmHOX2a(2)         --------->ANAC58         ---------->DOF2 --------ANAC58<------MYB46(1)                       --------->ANAC58      --------->YAB1 ----MYB46(1)  <---------ANAC46                  --------->YAB1           <---------ATHB12 ----MYB83     <---------ANAC55(2)             --------->ANAC58     --------->HSFB2a(2) --------->ANAC58 ------AtMYB61 ----------->GT1         <----------DOF2 --------->ATHB12 --------->GLK1(1) ->ATHB12     --------->MYB59 ------>ZmHOX2a(1)--------->ANAC58     <---------HSFB2a(2) --------->ANAC58   tggttgtttgaaatattaggtgaaattggatccttcaaggcctttgagcaagcataagcattggattgtttcagaaatcataaagaaagcacgcatttat  6510000  Previous    Next  AGI:  At3g18870.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G34620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47639.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 6508391    to: 6509349    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18880.1    Description:  ribosomal protein S17 family protein. similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45477.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45488.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) Range:  from: 6509546    to: 6510631    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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