Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ATHB12                            --------->YAB1             --------->ATHB51                           <---------ATHB12        --------->AHL20(2)                     --------->ANAC58              --------->AHL20(1)                     --------->ANAC58              <---------AHL20(1) <-----------ARR10 ---------->DOF2                 <---------AHL20(2) -->ANAC58  <------ZmHOX2a(1)       --------->ANAC46  <---------YAB1                          ------- -->ANAC58 --------->ICU4--------->WOX13(1)----------->GT1      ---------->DOF2   ---------->DOF2   acaaatctcagtgaggattaaaaaagccaatcaagaacacagcatttgtaaaatttattattggaaaaaagaaattcagacagagaaaggaaccagatag  6501300                                                                                                =====                                                                                                =====                                                                                                <----                                                               >>>>>>>>>TBF1          --------->RVE1(1)      --------->At4g35610    <---------TOE1(2)              >>>>>>>>>TBF1             --------->CCA1(1)      --------->ZAT2   <---------At4g35610           <---------ZAT18          <------NtERF2<---------YAB1      <---------ZAT2   --------->At4g35610           --------->ZAT14  <---------AHL20(2) --------->YAB1      <---------At4g35610    --------->LBD16   --------->MYB52(1)*TSS<---------AHL20(2)--------->ARR11(3) -->CCA1(2)            --------->ZAT2  --------->YAB1<---------ZAT14 --------->AHL20(2)<---------ARR11(3)   aagaagacagcttaccatggaactgagcttccaggttttatttataaacaaacagtgcagaagaagaagaatttaatggccgagaaaaatatcatgaagg  6501400                                          <---------At5g28300          <---------ANAC46            <---------ICU4          ----------->GT1            <---------------AGL15       <---------MYB52(1)           <-----------------AGL2                            --------->ALFIN1     ------>ZmHOX2a(2)          <-------GAMYB                              <---------ZAT6 <------ZmHOX2a(1)    <------ZmHOX2a(2)          --------->MYB55(2)                ---------->DOF2    <------MYB46(1) - <---------YAB1                --------->MYB111(2)         --------->HSFB2a(2)      <------MYB83   >> ===========HOX2a_HOX2a        <---------MYB46(3)      --------->O2      <---------ZAT18 ----------->GT1 ==========HOX2a_HOX2a        <--------P <-----------GT1   <---------HSFB2a(2)   <------ZmHOX2a(1)<-- --ZmHOX2a(1)           <-----------RAV1(2)       --------->ANAC46   <---------------AtSPL8     <----   actacgatcgttttgtgaaaataggctcagaggttgttgctaattacggtctatgccacttctcgtagaaagtagtactcttaggaaggtgaggaaattt  6501500                                        <-----------TGA1                                        <-----------HVH21                                       --------->ANAC58                                       --------->bZIP60(2)                                       --------->O2                                       <---------O2                                       --------->TGA1a                                       <---------TGA1a                                       --------->ANAC58                                       --------->ANAC55(1)                             <---------AHL20(2)                            <---------AHL20(2)                         <--------HAHB4<---------ANAC55(2)                         <---------ICU4--------->ANAC46                         --------->ATHB51                                       <---------AHL20(2)              <---------DAG2--------->AHL20(2)                              --------->YAB1          <---------ALFIN1 <---------YAB1--------->TGA2(2)                 <---------YAB1       <---------ZAT18  <---------YAB1 ==================================bZIP_DOF  <-----------GT1     <-----------HVH21  --------->ICU4 --------->ANAC55(2)                 --------->ICU4 -------->MYB46(3)---------->ID1      <-----------STF1                --------->At4g35610 >>>>>>>>>>>>>>>LFY <-----------TGA1 <---------ALFIN1                 <---------At4g35610      <----- ---------GT1 ===================================bZIP_DOF     <----------DOF2 <---------YAB1--------- -----AHL20(2)<----------DOF2--------->AHL20(2)               <---------DAG2<---------ICU4--------->WOX13(1)   aaaccactgtcccctcctttttcgtcattattaaattcgacacgtcatcgtgtttcattgttccctttattcagcttattattattttcagtctatcaat  6501600                              <---------AHL20(2)     ---------->DOF2                             <---------AHL20(2)    <---------AHL20(2)       <----------DOF2 ----------->GT1       --------->TOE2(3)   --------->LBD16    <---------TOE2(3)      --------->TOE1(3)                                   <---   <------NtERF2 ----------->RAV1(1)       <---------YAB1   ----------->GT1           --------->ZAT14 --------->ATERF1(1)---------->DOF2       <-----------GT1---------->DOF2              <---------ZAT14 -------CBF     --------->ZAT18 <---------YAB1------>ZmHOX2a(1)                      ------>ZmHOX2a(1) --->CBF   ---------->DOF2   --------->AHL20(2)  ----------->TBP          *TSS     ----------->RAV1(2)   tgggccgggctttgaaagcccacaaaggttatttattatacgtttatccttatataaaagaaaggaaataagaaattagtttttctcctgcagagtgttt  6501700              <---------DAG2             <------MYB83        --------->ANAC58                 <------MYB46(1)        --------->ANAC46                --------->MYB46(2)        ======================================MYC_MYB        =================bZIP_DOF       --------->MYB59        --------->TGA1a                <---------MYB55(1)        --------->ANAC58              <-------GAMYB                ------>ZmHOX2a(1)   <---------GLK1(1)     ------>ZmHOX2a(1)                <---------MYB52(1)   <---------At4g35610         --------->GLK1(1)    --------->TOE2(3)               <---------ANAC58    --------->At4g35610     --------->WRKY18(1) ------>ZmHOX2a(1)                  <---------ANAC46    <---------At4g35610    <-----------HVH21 --------GT1  <----------DOF2       <---------ANAC58   <-----------RAV1(1) --------->YAB1   ctccttcctcaagtcactttttgagtcgcagcaatttggcgtttggtatctctcaatctgctgcttctccttctcagtcatggtcatggatatcgatttc  6501800                       <-------TEIL                    --------->At4g35610                    <---------ZAT2                 <---------ANAC58                 <---------ANAC58                <-------TEIL                    <---------GLK1(1)               --------->ALFIN1                 --------->GLK1(1)             <---------TGA1a                    <------ZmHOX2a(2)             --------->ZAT2                    <---------ARR11(3)             ====================bZIP_DOF      <---------AGP1                                     <--             --------->At4g35610               --------->ARR11(3)                                 <--             <---------ZAT2              <---------REM1(1)                                        ---             <---------At4g35610    --------->YAB1          --------->ARR14(2)      <---------YAB1<--           <-----------RAV1(2)     --------->ICU4------>ZmHOX2a(2)          <-----------GT1----------        --------->ZAT2<----------DOF2 <---------YAB1<----------DOF2     <----------DOF2<---------GLK1(1)   aacgagtacaagctcaggtgcgagcttcatggccacgatgatgatgtaagatctctttgctaaatccacttcttctttctactgttttgatttctcgttt  6501900    ------>ZmHOX2a(2) -------ANAC58                                                     --------->O2 -------ANAC58                                               <-----------GT1 ------>ANAC55(2) <---------GLK1(2)                  <---------At4g35610                            < -------ANAC46    --------->ARR11(3)                 --------->At4g35610                    <-------- >ID1             <---------ARR11(3)              <-------TEIL<---------At5g28300<-----------GT1   --   tcgtgatcgattctactctagattttgaaattaagtcttgtattcagtagggttcagcaaaattcaccctcgtgattccaatttcactgttccgcttttg  6502000                                                                       <------MYB46(1)                                                                       <------MYB83                                                                 <---------YAB1 --------->LBD16                                              --------->AHL20(2) ---------LBD16      <---------At4g35610              --------->ATHB12--------->MYB59     <---------- --DOF2 <-----------GT1               <---------ZAT6 <---------YAB1   <---------TOE2(3)   ----------- ---->ZmHOX2a(2)     --------->At4g35610      <----------DOF2 <---------AHL20(2)        ------->TEIL   atccagggtttttcaattcaatgagctgatttgatagttagtgtgaagctttgttttgattagttttattattaggttgacttctcaacgaatttgtact  6502100                                        <---------ANAC46                                        <----                                        <---------ANAC58            --------->AHL20(2)       <-------          <---------AHL20(2)            <---------ANAC58       ================================HOX2a_HOX2a         --------->AHL20(2)             <---------ANAC55(1)    <------ZmHOX2a(2)           --------->ALFIN1 -----AtSPL8                     <-----------GT1        <---------YAB1  <-----------GT1 <------ZmHOX2a(1) ---->AtSPL8               <---------TOE2(3)           --------->AHL20(2)            <-----------RAV1(2)   caatttgagaattttatctaatagggtttgatgtttaaccttgcgtgccaatggcattaatatagatcaaatttatacaatttttcggcaggagtgtgat  6502200  Previous    Next  AGI:  At3g18850.1    Description:  LPAT5; acyltransferase. Identical to Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (LPAT5) [Arabidopsis Thaliana] (GB:Q9LHN4); similar to LPAT4, acyltransferase [Arabidopsis thaliana] (TAIR:AT1G75020.1); similar to LPAT4, acyltransferase [Arabidopsis thaliana] (TAIR:AT1G75020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47667.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) Range:  from: 6499421    to: 6501365    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18860.1    Description:  transducin family protein / WD-40 repeat family protein. similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75657.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47668.1); contains InterPro domain PUL (InterPro:IPR013535); con Range:  from: 6501674    to: 6508559    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version