Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                              <------                                                                                            ---------                                                                                            -------->HAHB4                                                                                           <---------YAB1                                                                                           --------->ICU4                                                                                      --------->ANAC58                 <-------TEIL                <-----------HVH21                        --------->ANAC58            ---------->DOF2              --------->YAB1                         ----------->RAV1(2)         --------->YAB1               <---------GLK1(2)             --------->ANAC46<-----------RAV1(2)       ------->TEIL          ------>ZmHOX2a(1)     <---------At4g35610          <---------At4g35610    <---------ATHB12   ------->TEIL--------->HSFB2a(2)     ----------->GT1      --------->At4g35610   gatgcaatgaatcacaaagttcatgaatttcctgttaccagaatcaccatcagagctcatatggttgaacacaacatacttcacctgcaggtaatgatca  6501000                                                                    <---------AHL20(2)                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                                   --------->AHL20(1)                                                             ----------->GT1                                <----------DOF2            <---------ANAC58                                <---------DAG2             <---------ANAC58 ----->DOF2              ---------->DOF2                   <---------ANAC46                        <- ---YAB1        --------->GLK1(2)        ------->GAMYB   <---------ARR11(3)                     <---- >YAB1      --------->YAB1--------------->AtSPL8         --------->ARR11(3)           <-------TEIL <-   aagacacatcaaaataagaatcgatagcaaagtactttatcaacagaaaacgaaaacaatgtcttgtaatttaatagacttattcaaattcatacaatct  6501100                                                                                              -------                           <---------ANAC58                                                   -------            <---------AHL20(2)                                                             <-------TEIL   <-----------RAV1(1)     <---------ANAC58                                               --------->CCA1(2)  <---------TOE2(3)       --------->HSFC1(2)                                           <---------YAB1 --------WOX13(1)         <---------HSFC1(2)                                         --------->YAB1 -----YAB1  --------->AHL20(2)                     >>>>>>>>>EIN3                --------->ARR11(3) --------YAB1    ---------->DOF2                  <-------TEIL                  <---------ARR11(3)   gattaatgttggattaaaataaagaagaagcttgtattctcaaacacatatatacattgtctaaaacaaaaactctcaccaagataatcaagattcaagc  6501200                                                       --------->ATHB12                            --------->YAB1             --------->ATHB51                           <---------ATHB12        <---------AHL20(2)                     --------->ANAC58              --------->AHL20(2)                     --------->ANAC58              <---------AHL20(1) <-----------ARR10 ---------->DOF2                 --------->AHL20(1) -->ANAC58  <------ZmHOX2a(1)       --------->ANAC46  <---------YAB1                          ------- -->ANAC58 --------->ICU4--------->WOX13(1)----------->GT1      ---------->DOF2   ---------->DOF2   acaaatctcagtgaggattaaaaaagccaatcaagaacacagcatttgtaaaatttattattggaaaaaagaaattcagacagagaaaggaaccagatag  6501300                                                                                                =====                                                                                                =====                                                                                                <----                                                               >>>>>>>>>TBF1          --------->CCA1(1)      <---------At4g35610    --------->LBD16                >>>>>>>>>TBF1             --------->RVE1(1)      --------->At4g35610    <---------TOE1(2)       <---------ZAT14          <------NtERF2<---------YAB1      <---------ZAT2   <---------At4g35610           --------->ZAT14  <---------AHL20(2) --------->YAB1      --------->ZAT2   --------->At4g35610     --------->MYB52(1)*TSS--------->AHL20(2)--------->ARR11(3) -->CCA1(2)            --------->ZAT2  --------->YAB1<---------ZAT18 <---------AHL20(2)<---------ARR11(3)   aagaagacagcttaccatggaactgagcttccaggttttatttataaacaaacagtgcagaagaagaagaatttaatggccgagaaaaatatcatgaagg  6501400                                          <---------At5g28300          <---------ANAC46            <---------ICU4          ----------->GT1            <---------------AGL15       <---------MYB52(1)           <-----------------AGL2                            --------->ALFIN1     ------>ZmHOX2a(2)          <-------GAMYB                              <---------ZAT6 <------ZmHOX2a(1)    <------ZmHOX2a(2)          <---------MYB46(3)                ---------->DOF2    <------MYB46(1) - <---------YAB1                --------->MYB111(2)         <---------HSFB2a(2)      <------MYB83   >> ==========HOX2a_HOX2a         --------->MYB55(2)      --------->O2      <---------ZAT18 ----------->GT1 ===========HOX2a_HOX2a       <--------P <-----------GT1   --------->HSFB2a(2)   <------ZmHOX2a(1)<-- --ZmHOX2a(1)           <-----------RAV1(2)       --------->ANAC46   <---------------AtSPL8     <----   actacgatcgttttgtgaaaataggctcagaggttgttgctaattacggtctatgccacttctcgtagaaagtagtactcttaggaaggtgaggaaattt  6501500                                        <-----------TGA1                                        <-----------HVH21                                       --------->ANAC55(2)                                       <---------ANAC55(2)                                       --------->ANAC46                                       --------->ANAC58                                       --------->ANAC55(1)                                       --------->O2                                       --------->bZIP60(2)                                       <---------TGA1a                             <---------AHL20(2)                            <---------AHL20(2)                         --------->ATHB51                         <--------HAHB4--------->TGA1a                         <---------ICU4<---------O2                             <---------AHL20(2)              <---------DAG2--------->AHL20(2)                              <---------ICU4          <---------ALFIN1 <---------YAB1--------->TGA2(2)                 --------->ICU4       <---------ZAT18  <---------YAB1 --------->ANAC58                    <---------YAB1     <-----------HVH21  --------->ICU4 ==================================bZIP_DOF  <-----------GT1 -------->MYB46(3)---------->ID1      <-----------STF1                --------->At4g35610 >>>>>>>>>>>>>>>LFY <-----------TGA1 <---------ALFIN1                 <---------At4g35610      <----- ---------GT1 <----------DOF2--------->AHL20(2)               <---------DAG2--------->YAB1--------->WOX13(1) -----AHL20(2)===================================bZIP_DOF     <----------DOF2 <---------YAB1---------   aaaccactgtcccctcctttttcgtcattattaaattcgacacgtcatcgtgtttcattgttccctttattcagcttattattattttcagtctatcaat  6501600                              <---------AHL20(2)     ---------->DOF2                             <---------AHL20(2)    <---------AHL20(2)       <----------DOF2 ----------->GT1       --------->TOE1(3)   --------->LBD16    <---------TOE2(3)      --------->TOE2(3)                                   <---   <------NtERF2 ----------->RAV1(1)       <---------YAB1   ----------->GT1           --------->ZAT14 --------->ATERF1(1)---------->DOF2       <-----------GT1---------->DOF2              <---------ZAT14 -------CBF     --------->ZAT18 <---------YAB1------>ZmHOX2a(1)                      ------>ZmHOX2a(1) --->CBF   ---------->DOF2   --------->AHL20(2)  ----------->TBP          *TSS     ----------->RAV1(2)   tgggccgggctttgaaagcccacaaaggttatttattatacgtttatccttatataaaagaaaggaaataagaaattagtttttctcctgcagagtgttt  6501700              <---------DAG2             <------MYB46(1)        --------->ANAC58                 <------MYB83        =================bZIP_DOF       --------->MYB59        ======================================MYC_MYB        --------->ANAC46                --------->MYB46(2)        --------->TGA1a                <---------MYB55(1)        --------->ANAC58              <-------GAMYB                ------>ZmHOX2a(1)   --------->GLK1(1)     ------>ZmHOX2a(1)                <---------MYB52(1)   <---------At4g35610         <---------GLK1(1)    --------->TOE2(3)               <---------ANAC58    --------->At4g35610     --------->WRKY18(1) ------>ZmHOX2a(1)                  <---------ANAC46    <---------At4g35610    <-----------HVH21 --------GT1  <----------DOF2       <---------ANAC58   <-----------RAV1(1) --------->YAB1   ctccttcctcaagtcactttttgagtcgcagcaatttggcgtttggtatctctcaatctgctgcttctccttctcagtcatggtcatggatatcgatttc  6501800                       <-------TEIL                    --------->At4g35610                    <---------ZAT2                 <---------ANAC58                 <---------ANAC58                <-------TEIL                    --------->GLK1(1)               --------->ALFIN1                 <------ZmHOX2a(2)             <---------TGA1a                    <---------GLK1(1)             ====================bZIP_DOF      <---------ARR11(3)             --------->ZAT2                    <---------AGP1                                     <--             --------->At4g35610               --------->ARR11(3)                                 <--             <---------ZAT2              <---------REM1(1)                                        <--             <---------At4g35610    --------->YAB1          --------->ARR14(2)      <---------YAB1---           <-----------RAV1(2)     --------->ICU4------>ZmHOX2a(2)          <-----------GT1----------        --------->ZAT2<----------DOF2 <---------YAB1<----------DOF2     <----------DOF2<---------GLK1(1)   aacgagtacaagctcaggtgcgagcttcatggccacgatgatgatgtaagatctctttgctaaatccacttcttctttctactgttttgatttctcgttt  6501900  Previous    Next  AGI:  At3g18850.1    Description:  LPAT5; acyltransferase. Identical to Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (LPAT5) [Arabidopsis Thaliana] (GB:Q9LHN4); similar to LPAT4, acyltransferase [Arabidopsis thaliana] (TAIR:AT1G75020.1); similar to LPAT4, acyltransferase [Arabidopsis thaliana] (TAIR:AT1G75020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47667.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) Range:  from: 6499421    to: 6501365    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18860.1    Description:  transducin family protein / WD-40 repeat family protein. similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75657.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47668.1); contains InterPro domain PUL (InterPro:IPR013535); con Range:  from: 6501674    to: 6508559    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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