Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ---------->DOF2    <----------DOF2             --------->AHL20(2)               <-----------GT1 -----ICU4                 <---------YAB1           <---------DAG2                      --------->CCA1(2) -----GLK1(2)    <----------DOF2<---------AHL20(2)  <----------DOF2    ---------->DOF2  --------->At4g35610   atctctctttcggtgttttctttttgtatatgattttatttgtaaagctctctcctttttttgttttttacgagaaagagatagagagagagatgaacag  6483700                                                                    <---------REM1(1)                                                                    <---------MYB46(3)                                                                 <-----------RAV1(1)                                                               <----------DOF2                                                            --------->ARR11(3)                                    ------>ZmHOX2a(1)       <---------ARR11(1)                                --------->ARR14(2)    <----------DOF2                 <------------CBF                     <---------ANAC58                <---------ANAC58      <-------GAMYB                     <---------ANAC58            --------->CCA1(2)  <-----------RAV1(1)     <--------                     <---------ANAC46       ---------->DOF2<---------CCA1(2)<---------MYB52(1)                 <----------DOF2<---------ARR14(2)   <---------ANAC58     <-----------RAV1(1)   agagaaaacacaaaaacctctttgtgtgtgttcaaatcctatttttaaaagagatgctttcaaatctttgttgttgctgttgtttctgtattggtattgt  6483800                                                    --------->TOE1(3)                                                  ------->TEIL                                               --------->ANAC55(2)                                               <---------ANAC55(2)                       <---------At5g28300                                              --------------->AtSPL8                    <-----------GT1                                              <---------------AtSPL8                 <---------ICU4             <-----------------AGL3    >>>>>>>>>>FUS3                           ----------->GT1             ----------------->AGL3    >>>>>>>>>>ABI3                         ---------->DOF2   <-----------TBP                    --------->ANAC58                    --------->ANAC58        <-- <----------DOF2                      --------->ANAC58                    --------->ANAC58     <----- ----CBF     <-----------------AGL2   --------->AtLEC2           ----------->GT1<----------ID1 ------   cttctttttgtagggtctatatttgggtattaatacagccatgcaaattatgtaccttcaactaaatttgtaaaacaagaaaaagaaaaattacagtcta  6483900                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                  ---                                                                                                 ----                                                                                   --------->MYB52(1)                                --------->AHL20(2)                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                              --------->AHL20(2)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC58    --------->YAB1                              ------>MYB46(1)   <---------ZAT14        <---------ANAC58  --------->AHL20(2)                            ------>MYB83 xxxxxxxxxxxxxxxx  <---------YAB1         --------->YAB1                               --------->AtMYB61   --------->ZAT18 -------GLK1(2)         --------->AHL20(2)                          <---------ARR11(3)    <---------ZAT18 ----HSFB2a(2)     <---------MYB59--------->YAB1                    --------->ARR11(3) <xxxxxxxxxxxxx --->HSFB2a(2)  <-----------GT1--------->YAB1                       --------->ARR14(3) <xxxxxxxxxxxxx   gaatttgattacttggttttaccaaaataaaaataaaaataagcatgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaa  6484000              --------->At4g35610                                                --------->ATHB12       --------->CCA1(2)                                                  *TSS  --------->ICU4     <---------At4g35610                                               <---------YAB1     --------->ZAT2                                                  <--------HAHB4     <---------ZAT2                                                  --------->ATHB12     --------->At4g35610                                             --------->ATHB51   <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <---------ICU4   <xxxxxxxxxxxxxxxxsmallRNA(i)                                      -------->HAHB4 ----->MYB83  <---------ZAT2                                         -------->ATHB1 ----->MYB46(1)                                              ----------->GT1 <------ZmHOX2a(1) ---------->RAV1(2)                                    --------->DAG2--------->YAB1 ------->MYB52(1)    <---------At4g35610              ---------->DOF2<---------AHL20(2) ---->GAMYB   <---------At4g35610                  <------MYB83  --------->AHL20(2) ----->MYB46(3)   <---------ANAC58                --------->MYB46(2)<---------YAB1 xxxx>smallRNA(se3)*TSS         ------------>CBF  --------->MYB59<---------AHL20(2)                <- xxxsmallRNA(se3) <---------ANAC58     ------->TEIL<------MYB46(1)  --------->ICU4      <---------DAG2 xxxsmallRNA(i)   <---------ANAC46     <-------TEIL----------->GT1  <---------ATHB51    <----------DOF2   ccaactgagctacgagagctgcttgctgatcaaaaccaatgtacatataagtttggtaaagtatagtttaattattagaggaatgattcacttttagtaa  6484100                                                                                           --------->DEAR3(1)                                                                                     --------->ANAC46                                                                                     --------->bZIP60(2)                                                                                   --------->AtMYB61                                                                                   <---------ALFIN1                                                                                  --------->ANAC46                                                                                 ------>MYB83                                                                                 ------>MYB46(1)                                                                                --------->MYB55(1)                                                                                --------->ANAC46                                                                                <---------ALFIN1                                                                --------->ZAT14--------->DEAR3(1)                                                                <---------ZAT14<---------MYB111(2)                                              --------->At4g35610             --------->ANAC58           --------->YAB1                <------ZmHOX2a(1)      --------->ZAT18<---------MYB55(2)        --------->YAB1               <------ZmHOX2a(2)          <---------ZAT18--------->MYB46(3)      --------->AHL20(2)            <---------ARR14(2)        --------->ANAC46--------->ANAC58 ---------ID1     ---------->DOF2   --------->ARR11(3)    <-----------HVH21   --------->ANAC46   gaagacaaaataatagtcacaaaagaaattagaagacagatcaggaacagctagaagactcttcagggcacagagaaaacacccaccacatcaccgtctt  6484200                                                                           --------->SPL7                                                                         ------>NtERF2                                                                         <---------RAP2.6(3)                                                                         <-----------HVH21                                                                         <---------SPL7                                                                        <---------ANAC58                             <---------RVE1(1)                          <---------ANAC58                             <---------CCA1(1)                 --------->ARR14(2)                            --------->ARR11(3)                 <---------ARR14(2)                            --------->ARR14(2)              ------>ZmHOX2a(2)         ------->TEIL                            <---------ARR11(3)             --------->ARR14(1)         --------->SPL7                       ------>ZmHOX2a(2)                   --------->CCA1(2)      --------------->AtSPL8                      <------ZmHOX2a(2)                    <------ZmHOX2a(2)      --------------->AtSPL3              ----------->RAV1(1)                         --------->AGP1--------->DEAR3(1)            --------->MYB46(3)                            <---------ARR14(2)  --------->LBD16           <---------At5g28300                            --------->ARR14(2) <---------ANAC46------>ZmHOX2a(1)          <-----------GT1   <---------ARR14(2)      <----------DOF2   ------>NtERF2 <---------SPL7<--   cttcaacaaaatttaccaccagagatcgcagatatttcttcattctatctctctcttttagatccgattcgatgccgtcccgtagacgtaccctcctcaa  6484300                                                                                       <---------LBD16                                                                                      <---------LBD16                         <------MYB83                                           <---------ANAC46                        --------->MYB59                                         <---------ANAC58                        <---------AtMYB61                                       <---------ANAC58                      <--------P                                           <------MYB46(1)                     <-------GAMYB                                         <---------MYB46(3)                  <---------ANAC58                                         <------MYB83<---------ANAC46                  <---------ANAC58                                      <---------ANAC58            ----------->HVH21                                           <---------ANAC58         <---------DEAR3(1)                                             <---------ANAC46--------->LBD16        ------>ZmHOX2a(1)<------MYB46(1)              --------->ANAC55(2) <---------AtMYB61 -------ARR11(3)  <---------ANAC46            <---------AHL20(2)       <---------MYB46(3)   ggtcatcatcctcggtgatagcgggttaggtttctcttaacatactattttttcttatgtgattttgagtttttgggtggtttcgttttccgggtttatg  6484400                  <---------AHL20(2)                  --------->AHL20(2)          <---------ARR14(2)          <---------GLK1(2)                                                <----------DOF2          --------->ARR14(2)   <XXXXXXXXXXXXXXXXXXXXMIR829.2         <---------At4g35610       <-----         <------------------------ANAC81--------->AHL20(2)      <----------DOF2           ---------->ID1      <---------LBD16         <----------DOF2      <---------YAB1    --------->At4g35610<-----------RAV1(1)   agatttatctcggattttgtttaaatcgttttcttttgaagtttaaatttgatatcatttgttaatcttttagatgacttttgttgaattttgttgtctt  6484500                                         <---------TOE2(3)                                         <---------TOE1(3)                                       ---------->DOF2              <---------MYB46(3)                                      --------->AHL20(2)       <-------GAMYB                     ----                 --------->YAB1       <---------AHL20(2)      <---------MYB46(3)                 ----               --------->ANAC46   <---------AHL20(2)          --------->MYB52(2)       <---------CCA1(1)               --------->ANAC58   --------->AHL20(2)          <-----------RAV1(1)      <---------RVE1(1)     <---------ANAC46      ------>ZmHOX2a(2)                <---------ANAC46          --------->ARR11(3)  <---------AtMYB61       <---------At4g35610          <---------ANAC46               <---------ARR11(3) -----DOF2     --------->ANAC58<----------DOF2      <---------AtMYB61      ------>ZmHOX2a(2)     <---   tgttttggtttgtaaacactcaaaattgatctgcttttaattaaaggtttcatggtggtgttgtttgttgttgttgatccaagtatcagatattttcttc  6484600  Previous    Next  AGI:  At3g18815.1    Description:  pre-tRNA. tRNA-Thr (anticodon: AGT) Range:  from: 6483946    to: 6484019    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18820.1    Description:  AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f); GTP binding. similar to ATRAB7, GTP binding [Arabidopsis thaliana] (TAIR:AT1G49300.1); similar to ATRAB7, GTP binding [Arabidopsis thaliana] (TAIR:AT1G49300.2); similar to unknown [Populus trichocarpa] (GB:ABK94609.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 6484074    to: 6486253    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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