Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ANAC58                                                      <---------ANAC55(1)                                                      <---------ANAC55(2)                                                      <---------ANAC58                                                 ----------->GT1                                   <-                                             ---------->DOF2                                       <- ---------DAG2                           ----------->GT1         --------->AtLEC2                 <-- ----------DOF2                     <---------YAB1    --------->ANAC55(2)                         --- ---ZAT6                         --------->GLK1(2)<-----------HVH21         ------->TEIL  ---------->DOF2   tacttttgctacctccatcttcacttggaactgatattctgaatagttaaagcgttacatgtcttccattcacaaatgaacttaaactagcacaaagtca  6477300           --------->ZAT18          ------>ZmHOX2a(2)         <------ZmHOX2a(2)         --------------->AtSPL8    --------->TOE2(3)        --------->ARR11(3)        --------->YAB1        <---------ARR11(3)       <---------ATHB12                                 ------->TEIL   <---------AHL20(2)       ------->GAMYB                                 <---------TOE2(1) --------CCA1(1)            --------->TOE2(3)                  --------->AtMYB61 <---------CCA1(2) --------RVE1(1)         <-----------GT1                      --------->ANAC46 --------->ALFIN1     - -------ARR11(3)   <---------AHL20(2)                       --------->ANAC46 <---------ANAC46    <--- ------>ARR11(3)  --------->AHL20(2)       <-----------GT1<-----------GT1 <---------TOE1(1)<---------MYB52(1)   gatattttaagatcgcaccattttatataaccccaatcgtcaattctactgtttcaagttttacaccaaaacaattacgaggtgtatctattcgttactc  6477400                                                         --------->AtLEC2                                          <---------AHL20(2)                                         <---------AHL20(2)             <-----------GT1                                         --------->AHL20(2)       <------MYB46(1)                   --------->ANAC55(2)   --------->AHL20(1)       <------MYB83           --------->DAG2       <---------YAB1                    <---------AHL20(1)       ----------->GT1       ---------->DOF2 --------->ID1<----------DOF2           --------->AHL20(2) <---------ALFIN1    <---------YAB1<------- -------DOF2  ------>ZmHOX2a(1)   <-----------GT1        ------>ZmHOX2a(1) --------->ARR11(3)<-------   ttttcgcttattaatccttttacatgatgcaaaatataacaaattaatttcaaattgtcctgcacatttggtttatacatcttgattccaaaaagtcaac  6477500                                               --------->ARR11(3)                                               --------->AHL20(1)                                               <---------AHL20(2)                            <-------                                               <---------AHL20(1)                            --------                    --------->ANAC46   --------->ZAT18                            --------->CCA1(2)             <---------ICU4            <---------ZAT18               <---------ANAC58        --------          --------->WOX13(1)      <---------ANAC46                   <---------ANAC58        <-------         --------->AHL20(2)       <---------ANAC58                   <---------ANAC46       --------- --WRKY38(1)<---------ATHB12      <---------ANAC58        --------->STY1(2)      --------->ARR14(2) --WRKY12<---------AHL20(2)  --------->HSFB2a(1)        ------>ZmHOX2a(1)        <---------ARR14(2)   tcgttgaagaattaatcaatactcgaaacgagtcttccttgggccctaaaatattgtcctatctagttgatgcttatatagcatatatgggctaataaat  6477600                                                        --------->LBD16                                                        ------>NtERF2                          ------                                                       <---------LBD16                      <--------        <----------DOF2                        ---------->ID1                           ------------>CBF --AHL20(1)                                   <-----------GT1                          --------->TOE2(3) ->AHL20(2)              --------->ARR11(3)  <<<<<<<<<<GT-3b                 ------------>CBF  <----- ->AHL20(1)         <---------ANAC46     <---------AHL20(2)   ------------>CBF      <-----------GT1 --AHL20(2)       <------ZmHOX2a(1)     <---------YAB1<---------LBD16      <-----------GT1 --------->ARR14(2) >AHL20(2)    ---------->DOF2    ------------>CBF<----------DOF2   --------->AHL20(2)  ------->GAMYB   tgggccttagctttggaaaaggacgtagaacttgaaacaatttttatttttctttttccggcgaaacaattatctaattaccaatttaaccccaatcctt  6477700                  <---------CCA1(2)                --------->ANAC46     *TSS      --------->LBD16   <---------GLK1(2)     ------>ZmHOX2a(1)    <---------TOE2(3)   ----------------------->TaNAC69(2)         <---------TOE1(3) >ZmHOX2a(1)  <---------ANAC58       --------->AtLEC2            --------->DAG2 -ATHB12      <---------ANAC58       ------>ZmHOX2a(1)          ---------->DOF2       ------>ZmHOX2a(2) -----DOF2   <---------LBD16   <---------MYB52(1)        ----------->GT1      --------->ARR11(3) <---   tctcagtttctctcttccgcgtctctccttctcgttatcctgcaaattagggtttaagtaagaaaaaaaagctagagaagtatctcgatctcttcttctg  6477800                        <---------ANAC58--------->TOE2(2)                ---------->DOF2             <----------DOF2           --------->MYB46(3)         --------->ICU4        <----------DOF2 <---------ANAC58--------->TOE1(2)    --------->ANAC58      <---------At4g35610   <---------ZAT6  --------->LBD16  --------->ANAC58                      --  --------->GLK1(2) --------->CCA1(2)--------->ARR14(2)    <---------ANAC46                       <-- <---------GLK1(2) --------->ARR14(2)<---------ARR14(2)    <---------ANAC58                     <---- ------MYB52(1)  <---------TOE2(3)--------->YAB1           <---------ANAC58                ----------   ttagattctgctttcctttgagatttgctagtgtaatcgtaacctccgaagacccaagatggctcgtaatgaagagaaagcacagtcgatgctcaacaga  6477900                                                                                 <---------At4g35610                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                       <------ZmHOX2a(2)                                              <---------MYB59          --------->CCA1(2)                                          <---------ETT(2)            >>>>>>>>>GATA-4                            <----------ID1--------->DEAR3(1)          >>>>>>>>>GATA-3                            --------->ANAC58  --------->AtMYB61       >>>>>>>>>GATA-1         ---------->DOF2>>>>>>>>>TBF1     --------->ETT(2)            >>>>>>>>>GATA-2      --------->HSFB2a(2)   --------->ANAC58  <---------DAG2          --------->ARR11(3) ------->YAB1 --------->GLK1(2)           --------->WRKY12--------->YAB1------>ZmHOX2a(2) -----TEIL    <---------ARR14(2)          --------->WRKY38(1)         --------->AGP1 -----GLK1(2) --------->ARR14(2) ---------->DOF2         --------->At4g35610     --------->At4g35610 ->RAV1(1)   <---------GLK1(2) XXXXXXXXXXXXXXXXXXXX>MIR399B/C         <---------ARR11(3)          <--   ttcatcacccagaaagaatctgagaagaagaagccaaaagagcgtcgaccttacctcgcatcagaatgtagagatctagctgaagcagacaaatggagac  6478000                                                                        <---------ARR11(3)                                                                        --------->ARR11(3)                                                          --------->ZAT18 ------>ZmHOX2a(2)                                                          <---------ZAT14<------ZmHOX2a(2)                                                          --------->ZAT14--------->CCA1(2)                                     <-------TEIL     <------ZmHOX2a(1) --------->AGP1              <                             --------->ZAT2     =================================HOX2a_HOX2a   <-----                             <---------At4g35610================================HOX2a_HOX2a   <------                             --------->At4g35610<------ZmHOX2a(1)    <---------HSFB2a(2)      -------                ------>ZmHOX2a(2)   --------->GLK1(2) ===========================HOX2a_HOX2a --------               <------ZmHOX2a(2) ----------->ARR10    ==========================HOX2a_HOX2a  -------- -------At4g35610      ---------->DOF2      --------->TOE1(2)        --------->HSFB2a(2) <-----------GT1   agcaaattttgagagagatcggtagcaaagtagctgagattcagaacgaaggattaggagagcacagacttcgagatctaaacgatgagattaacaagct  6478100                                                                                        ----------->GT1                                                                                   <---------HSFC1(1)                                                                                   <---------HSFB2a(2)                                                                                   --------->HSFB2a(2)                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                <---------ARR14(2)                        <------NtERF2                                           <---------AGP1                      <---------DEAR3(1)                                        --------->AGP1                     --------->At4g35610                                        --------->ARR14(2)                     <---------At4g35610                                        --------->ARR11(3)          <---------GLK1(1)                <---------MYB46(3)                <---------ANAC55(2)          --------->GLK1(1)                ----------->GT1                   --------->ANAC55(2) ---------LBD16      --------->ATERF1(1)<------MYB46(1)                    --------->MYB52(1) ----GLK1(2)         <---------ABI4(1)  <------MYB83                      ----------->HVH21 ---HSFC1(2) --------->ATHB12          --------->MYB111(2)   <---------HSFB2a(1)------->TEIL -->HSFC1(2)<---------YAB1  --------->GLK1(2)           --------->ANAC46  ----------->TGA1 ->ANAC58<---------ARR11(3) --------->ARR14(2)   <---------ICU4         <---------At4g35610 ->ANAC58--------->ARR11(3) <---------ARR14(2)  --------->ICU4          --------->At4g35610  --------   tctcagggagagatatcattgggagcggcgaatcgttgagctaggtggtcacaattactcgaaacattcggcgaagatgacggatctagaaggtaacata  6478200  Previous    Next  AGI:  At3g18780.1    Description:  ACT2 (ACTIN 2); structural constituent of cytoskeleton. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT8 (ACTIN 8), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT1G49240.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin 8 [Arabidopsis halleri subsp. gemmifera] (GB:AAY29145.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin/actin-like; (InterP Range:  from: 6474877    to: 6477210    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18790.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN60270.1); contains InterPro domain Isy1-like splicing (InterPro:IPR009360) Range:  from: 6477705    to: 6479554    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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