Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ----------->GT1            ---------->DOF2                ---------->DOF2                     ----------->GT1          ------->GAMYB       --------->ANAC58                         --------->ANAC58   --------->GLK1(2)          --------->ANAC58                         --------->ANAC58   tcaagaatccaactgaaagttaaactaagcgtaagtaatctgggcgaaagaagtatcagtccatggtcgtagcaagcatttgagtaaaatgactgtataa  6459200                     --------->YAB1  ---------->DOF2                     --------->TOE1(3)                     --------->TOE2(3)           --------->STY1(2)      --------->YAB1            --------->ZAT6      <---------ARR11(3)         <------ZmHOX2a(2)  ---------->DOF2--------->TOE1(3)      --------->GLK1(2)     --------->GLK1(2)   <----------ID1     --------->TOE2(3)      --------->ARR11(3)--------->YAB1        ---------->DOF2      <---------MYB59    <---------YAB1   attcccaaaatctagctatctaaccataagaatcgatcagaaagatgaaaaagacaaagctaacacaaacctaaactaaaatgctaataccattgaatcg  6459300                                                                             <---------ANAC55(2)                                                                             --------->ANAC55(2)                        --------->ZAT6                                 --------->AHL20(2)            ------>ZmHOX2a(1)                                    --------->ANAC58        <---------ARR14(2)               --------->MYB46(3)      --------->ANAC58        --------->GLK1(2)          --------->YAB1               <---------TOE2(3)        --------->ARR14(2)   --------->ANAC46                  --------->MYB52(1)           <--------        --------->ARR11(3)  <---------LBD16                  <---------MYB52(2)----------->HVH21    <   gcctggagaaaatcctgatcaaacaaactctacggactcataaaccatcgattcagtaagaaaactaacgaaattgaatacctgatagtgtcttccgtcg  6459400                                                        ------>NtERF2                                                       --------->ANAC58                                                       --------->ANAC46                                                      --------->SPL7                     --------->ANAC46                                                <-----------HVH21<---------At4g35610     --------->ANAC58                                            ================HOX2a_HOX2a                  --------->ANAC58                                            ------>ZmHOX2a(2)<---------ARR14(2)         --------->ZAT18             --------->SPL7               --------->ARR11(3) --------->ARR14(2)         --------->LBD16          --------->TOE2(3)          --------->ARR14(2)--------->ANAC58                 <---------LBD16          --------->ANAC55(2)        <---------ARR14(2)--------->RAP2.6(2)------->MYC3  <---------ZAT18 -ANAC46  <---------ANAC55(2)       ===============HOX2a_HOX2a   --------->At4g35610   <---------ANAC58 ----------DOF2                     <------ZmHOX2a(1)<------ZmHOX2a(1)    <-------MYC3 <---------ANAC58   agctttctaataccgtaacccaattcgaccttgccaaaggatttgatctcggtgaggacgccatttctgctgtaaacgtgtttaccaatgcgcgcaacga  6459500                            <---------ANAC58                  <---------YAB1                  ------>ZmHOX2a(1)              ------>ZmHOX2a(1)                            <----------DOF2      <---------ETT(1)    <          <---------ALFIN1  <---------ANAC58             <------NtERF2------>ZmHOX2a(1)             <       ------>NtERF2 <---------YAB1                ---------->DOF2  ------>ZmHOX2a(2)               <   ggtcgatgaggccctccttcctgattataggcttgaacagaagcatacagtcgtagagcggcatttttgatccttcttccttccgacaagagattagctc  6459600                                                                           --------->ALFIN1                                                                         <---------ANAC58                                                                         <---------O2                                                                         --------->O2                                                                         <---------TGA1a                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                         <---------bZIP60(2)                                                                         --------->TGA1a                                                                        <------NtERF2                                                                       ------>NtERF2                                                                      --------->DEAR3(1)                                                                 ------>MYB46(1)                                                                 --------->MYB52(1)                                                                 ------>MYB83                                                                --------->MYB55(1)           <---------TOE2(2)                                   <---------MYB59           <---------TOE1(2)                                   --------->MYB46(3)          <-----------RAV1(2)                     <------------CBF--------->SPL7 ---------ANAC46                 *TSS             <---------ARR14(2)  <---------DEAR3(1) ---------ANAC58   --------->TOE1(3)              --------->ARR14(2)  ----------->HVH21        <----- ---------ANAC58   --------->TOE2(3)      --------->GLK1(1)    <---------MYB46(2)  <---------TOE2(3)   tggcttgttctctcaggtttaccttagggttttagtcttctcagatttcgccgattgggtcattaccaaacggcgacgtgttgttaagttttttttagtg  6459700                          <---------YAB1                         <---------AHL20(1)                         <---------AHL20(2)                       <---------AHL20(2)                    --------->AHL20(1)               --------------->AGL15               <---------------AGL15                                                    --------->YAB1 --------->ANAC58   <---------AHL20(1)                                          ---------->DOF2 --------->ANAC46  <---------AHL20(2)        <---------AHL20(2)            ----------->GT1 --------->ANAC58<-----------TBP        <---------ARR11(3)             --------->ARR11(3) ----ZAT6<-----------RAV1(1)            --------->ARR11(3)     --------->AHL20(2)    <----------DOF2   aaaacgacatcgtgttgctatatatattatttttgtctgagagttcttaaatttgatttggaaaatgaaataagaaattgtagaaagctttcatattagt  6459800                           <---------YAB1                         --------->YAB1                      <---------ICU4                      --------->YAB1                                                     <---------TOE1(2)                      --------->ATHB12                                                  --------->LBD16                      -------->HAHB4                           <---------AtLEC2         ------>ZmHOX2a(1)                     <---------YAB1                          <---------AHL20(2)        <---------LBD16                     --------->ICU4                     --------->AHL20(2)     <----------DOF2              <----------DOF2                           <---------AHL20(2)   ---------->ID1         ---------->DOF2<---------YAB1                  <---------AHL20(1)  <-----------GT1   --------->MYB46(3)<---------ATHB12            <-----------GT1        <---------AHL20(2)   tgacaacaaatgaaagctttgtaatgattataaatagtagttaacatatgtttaccattttatttacatggaattttttttctttttttcctgggtataa  6459900                                                 <---------AHL20(2)                                             --------->AHL20(2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            <---------AHL20(2)           ------------------------>ANAC81                 <---------ARR11(3)         <---------YAB1 --------->ANAC58                 --------->ARR11(3)        <---------AHL20(1)   --------->AHL20(2)      <---------AtLEC2                   <---------YAB1    <---------ALFIN1                  --------    <---------AHL20(2)              --------->At4g35610    --------->ANAC58             <----------ID1   gtttatttacatggaccaatatcatccaaagagtagagagcttaatattatttacataggcacacattatatgaaaaaaaaaaaaaaaaaaaaacaaacc  6460000                                                                                           <---------MYB52(2)                                                                                           --------->MYB46(3)                                                                                      ------>MYB46(1)                                                                                      ------>MYB83                                                                                      --------->AtLEC2                  --------->GLK1(2)                                                   --------->ANAC58                 <---------GLK1(2)                                                    --------->ANAC46                 <---------ARR14(2)                                                   --------->ANAC58                 --------->ARR11(3)                                              <---------WRKY18(1)                 <---------ARR11(3)                                             --------->WRKY38(1)                 --------->ARR14(2)                                           >>>>>>>>>GATA-4               ----------->ARR10         ----------->GT1                      >>>>>>>>>GATA-2               --------->ICU4        ---------->DOF2          <------ZmHOX2a(1)<---------WOX13(1)<---  ----------------->AGL1          --------->TOE2(3)       ------->GAMYB       >>>>>>>>>GATA-3   -----  ----------------->AG     --------->TOE2(3)           --------->MYB52(1)     >>>>>>>>>GATA-1  <----- ->MYB52(1) --------->WRKY18(1)  --------->YAB1     --------->YAB1       <---------ANAC46----------->RAV1(1)   gaaacccaaaatgggtcaagattctgaaacatcaaacatcaaagggtgaagtaatagtaaccgaggaagggtttgatgtggattgaccaagcaacaaatg  6460100  Previous    Next  AGI:  At3g18760.1    Description:  ribosomal protein S6 family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67720.1); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529); contains InterPro domain Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717) Range:  from: 6457696    to: 6459633    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49590.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46479.1) Range:  from: 6459890    to: 6463065    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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