Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                <---------ARR11(3)                                                               <---             --------->SPL7                                                                      <---             <---------TOE1(2)                                                                  <----           --------->TOE1(2)                                                                    <----        ------->TEIL                                                                           ------     --------->ANAC46                                                                         -------     --------->ANAC58         <-----------GT1                                                --------     --------->ANAC58      <---------GLK1(2)                                              -------->P ------>ZmHOX2a(1)------>ZmHOX2a(2)                                               <---------HSFC1(2) -------->TOE1(3)<------ZmHOX2a(2)                                                --------->HSFC1(2) ----->GLK1(2)--------->HSFB2a(1)                      ----------->RAV1(1)        --------->HSFB2a(1) ------ARR14(2) --------->ARR11(3)                    --------->MYB46(3)         <-----------ARR10<-- ----->ARR14(2) --------->ARR14(2)                  ----------->RAV1(1)          --------->ARR14(2) ------ARR11(1) <---------ARR14(2)         --------->WOX13(1)                    <---------ARR14(2)<-   atccttcacgaatcgaacgatcttcatcaaattctccagactcatcaatctctccaacaacacattcacttcttccttcgtcggaacttctctaccagac  6435200        --------->ARR14(2)        <---------ARR14(2)  --------->ARR14(2)              <---------SPL7  <---------ARR14(2)              ------>NtERF2 <------NtERF2                   <---------DEAR3(1) ----NtERF2                     --------->ATERF1(1) ------RAP2.3(1)                --------->RAP2.6(3) ------ORA47(2)               <---------bZIP60(1)                                           <-------- -----DEAR3(1)                <---------O2                                                  --------- -----RAP2.3(3)               --------->bZIP60(1)                                           --------- --->SPL7               <---------MYB52(1)                 --------->YAB1            <------ZmHOX2a(1) -->MYB52(1)--------->LBD16----------->HVH21          <---------ARR11(3)             <----------ID1 --->HVH21<---------LBD16  ----------->TGA1           --------->ARR14(2)            XXXXXXXXXXXXXXXXX -------LBD16          <-------GAMYB                  <---------ARR14(2)           --------->MYB59 --------ANAC46     <---------At5g28300               --------->ARR11(3)      <---------TOE2(3)<-----   ggcggattcagaaccggagaatcaccgttgtgacgacggccgattgaatcagaccagatattgataagacgttgaagagtgaggttaggaacaaaatctt  6435300                                                                                        --------->ZAT14                                                                                     <---------DEAR3(2)                                                                                     --------->LBD16                                                                                 --------->ANAC58                                                                                 <---------TGA1a                                                                                 --------->ANAC46                                                                                 <---------O2      <-                                                                                 --------->O2     ---                                                                                 --------->ANAC58 ===                              --------->ALFIN1                                   --------->TGA1a  --- -ARR11(3)            --------->LBD16                                       --------->ANAC46     ---- >GLK1(2)            <---------ANAC58     --------->AtMYB61             --------->YAB1  <-------TEIL >ARR11(3)           <---------ANAC58    --------->MYB46(3)--------->ARR14(2)    ==================== XXXX>MIR447C        <---------ANAC46 --------->MYB46(3)   <---------ARR14(2)<-----------HVH21 <----- -----DOF2          <---------LBD16 <-----------GT1    <---------LBD16 <------ZmHOX2a(2)<---------ZAT14   tagttttgagaagttgcatagtagcgggacaagtgttgttaccaccatcgagccatctctggatactggctcgatcataagtcacgccggtacagagact  6435400              <---------ANAC55(2)              --------->ANAC46              --------->ANAC55(2)              --------->ANAC58              <---------TGA1a              --------->ANAC58              <---------O2       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     <-----------ARR10     --------->ARR14(3)     --------->ARR11(3)     <---------ARR14(3)     <---------ARR14(2)     --------->ARR14(2)  --------->MYB52(1)     <---------ARR11(3) --------->CCA1(2)    --------->GLK1(1)   <---------GLK1(1)    <---------GLK1(1)   --------->GLK1(1) --------->LBD16       --------->ARR11(3)                   --------->ANAC46 --------LBD16--------->TGA1a                              ------->TEIL ------>MYB52(1)       <---------ARR11(3)                  <-------TEIL =======================MYC_MYB                        <---------------AtSPL8 ----->P      --------->O2                             --------------->AtSPL8 ----->MYB52(1)<-----------HVH21                       <---------------AtSPL3       --------->YAB1 -- ======MYC_MYB<---------bZIP60(1)                   --------->ZAT14      <---------CCA1(2)     ------ ----MYB52(2) --------->bZIP60(1)                   <---------ZAT14      <---------At4g35610  <------   aaccggagatctcatcacgtcaagagatatcggacatttgaagaaacttggcactgtaatgtacgtctctgtttcatctctccccatcagaaaaaaacaa  6435500                            ---------->DOF2                       <------NtERF2              --------->ARR14(2)           --------->ICU4              <---------ARR14(2)    ---------->DOF2              <-----------ARR10  --------->LBD16                                      --------->ALFIN1    --------->GLK1(2) ----------->GT1--------->DAG2          ----------->GT1       <---------AtMYB61 -------->DOF2--------->GLK1(2)<---------LBD16              --------->DAG2      --------->ALFIN1 ----->RAV1(1)--------->ARR11(3)<---------LBD16           ---------->DOF2--------->DAG2 ----ID1      <---------ARR11(3)<---------ANAC46 <---------YAB1    *TSS ---------->DOF2   caaaagaatcagagaaaatctgggcagagaaaatgcgggaaagtgaagatgatgctaagtgaaaggtgaagagagaaagtgagtggaggtgggattttaa  6435600                     ----------->HVH21                    <-----------TGA1                    <-----------HVH21                   <---------ANAC58                   --------->bZIP60(1)                   <---------ANAC58                                        <---------TOE2(3)             --------->ANAC58                                        --------->ARR11(3)             --------->ANAC58                                        <---------ARR11(3)            ------->TEIL                           --------->YAB1 <---------TOE2(3)    --------->ANAC58         --------->ANAC58             <-----------GT1            ---------->DOF2       --------->ANAC58         --------->ANAC58         <---------ARR11(3)       ----------->GT1 <---------TOE1(3)        -   gagagagtcaaacgcacgcttgcgtcaccgtagcaagattatactatatactatagtagtagtgtattaaagatgttaatgttgatgacaagtcagaaat  6435700                                                             <---------ARR14(2)             <--------                                                             --------->ARR14(2)  <---------MYB52(1)                                                         <---------At4g35610  <------------AtMYB77                                                       <-----------RAV1(2)  <---------ARR14(2)                      --------->WRKY18(1)   <---------HSFB2a(1)    --------->WRKY18(1)   --------->ALFIN1                     <-----------HVH21      --------->HSFB2a(1)   <-----------HVH21      <-----------RAV1(1) --------->DOF2 --------->GLK1(2)     ---------->DOF2<-----------HVH21      --------->ARR14(2)  -----   tttaaagaatcaacaaaaattctggtcatgggtcaaaaatcaaagaacgtttcagagtcaggggattgggtcaagtcgtaaccgttaagatgtgttgttg  6435800                        <---------ARR11(3)                        <---------ARR14(2)                   ----------->HVH21             <-------MYC3                 =========================================MYC_MYB                 ------->GAMYB                   <-------MYC4               ------>MYB46(1)                   ------->MYC2               ------>MYB83                      <-------MYC2              --------->MYB52(1)                 ------->MYC3             --------->AtMYB61                   ------->MYC4          >>>>>>>>>>WRKY62            <---------ANAC58          <---------WRKY18(1)         <---------ANAC58          >>>>>>>>>>WRKY40 ===============================bZIP_DOF                    ----------->HVH21         --------->WRKY12  <----------DOF2      --------->TGA1a                   <---------MYB46(3)         --------->WRKY38(1) <---------AHL20(2) <---------O2                     <---------AtMYB61         --------->WRKY45<------ZmHOX2a(2)<---------ANAC46                       --------->ALFIN1       <----------DOF2  --------->ARR14(2)<---------ANAC58                 --------->ALFIN1    <------ZmHOX2a(1)   --------->ARR11(3)<---------ANAC58               --------->ALFIN1    ============================HOX2a_HOX2a     --------->ANAC55(2)    <---------ANAC58            <-    =============================HOX2a_HOX2a    <---------TGA1a        <---------ANAC58            -- -MYB46(3)>>>>>>>>>>WRKY18------>ZmHOX2a(2)     --------->O2     <-----------RAV1(2)--------->ALFIN1 ---->ATHB12--------->MYB46(3)      <---------YAB1--------->ALFIN1     <---------ANAC46<---------PCF2   atgggaggactttgaccaacggtgacgatcttttatttatgcttgcttacacgtgtgagtttggaggccagaagcgtgtgggagtggtgggacatgttct  6435900                                          <------MYB46(1)                                          <------MYB83                                  <-------MYC2         <-----------------AGL1   ------->MYC2                                                      <         <---------ANAC46         <-------MYC3                  --------------->AtSPL8              -         ----------------->AGL1   ------->MYC3                  <---------------AtSPL8              -         <---------ANAC58     <---------ZAT14             --------------->AGL15                     -         <---------ANAC58     --------->ZAT18             <---------------AGL15                    --       <---------ZAT18        <---------ZAT18     <---------AHL20(2)  <----------DOF2    <---------AHL20(2)       --------->ZAT18    --------->HSFB2a(2)    --------->AHL20(2)   <---------DAG2     --------->AHL20(2) --------ZAT14           --------->ETT(2)<---------AtMYB61------>ZmHOX2a(1)   <---------YAB1       <- ------->ZAT14        <---------ANAC46   --------->MYB59 <-----------------AGL3         --------->AHL20(2)   ctgcacgagtggcctattttggtctcgtcgagagcacatgggtttggtccatataatgtcctgtttttagtactttttttatgaatgaaatttaaaaaca  6436000                                                                      --------->CCA1(2)                                                                      --------->GLK1(1)                                                                     <---------ARR11(3)         --------->ANAC58                                            --------->ARR14(2)         --------->ANAC58                                            <---------ARR14(2)       ---------->DOF2                                               --------->ARR11(3) ---------ICU4              <---------ZAT6                     <---------SPL7     --------->ARR11(3) ------->HAHB4       <---------AHL20(1)                      --------->ALFIN1     <---------ARR11(3) -------->ATHB12     <---------AHL20(2)                      <---------------AtSPL8 -------->YAB1      --------->YAB1                           <---------------AtSPL3 ------->ICU4 ----------->GT1    <---------ANAC55(2)  --------->At4g35610     --------->YAB1 --------ATHB12    <---------YAB1--------->ANAC55(2)  <---------At4g35610  ---------->DOF2        <--   aatgattacaaaagcaatgttataatatttgtgttacttaaaacaaactctgagtcagcaaatgtggtacagatatacaaagatgatattggtccatggc  6436100  Previous    Next  AGI:  At3g18710.1    Description:  U-box domain-containing protein. similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46456.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 6434089    to: 6435567    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version