Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------MYC3                     <------MYB46(1)                                        --------->YAB1 ------>MYC3                 <-----------RAV1(1)                                       <---------YAB1 ------AtLEC2          ----------->GT1      ---------->DOF2                 ---------->DOF2      <--- ------ANAC58   --------->WRKY18(1)    ----------->GT1               --------->ATHB12--------->YAB1 < ------ANAC58<---------TOE2(3)   <------MYB83             <---------At5g28300       --------->ICU4 --   catgtgaacatttttgaggtcaagaatgtaaatgttggtgatggaaaaaagaaatagatttaccgagaagatgagtgggaaagagaatgatgataagctt  6421600                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                     <------ZmHOX2a(1)     <---------ARR11(3)                                     ==============================HOX2a_HOX2a                                     ===============================HOX2a_HOX2a        --------->ARR11(3)          ----------->GT1        --------->ARR14(2)                      <- --------RAV1(2)             <------NtERF2                 <---------ARR14(2)                      <- ------ZmHOX2a(1)       --------->ALFIN1           --------->HSFC1(2)              --------->MYB46(3) ------->LBD16        --------->ALFIN1             <---------HSFC1(2) ----------->GT1 --------->MYB46(3)   caggagaatagataatggtgaagagagtggcagagagaaggataaacaagagaagcttcacgatctgaaacttggtgaaacaacaacaactactgttttt  6421700                                                                                ------>ZmHOX2a(1)                                                     <---------ALFIN1      --------->HSFB2a(1)                                                    --------->bZIP60(2)    <---------HSFB2a(1)                                                   ------>NtERF2          --------->ARR14(2)                                              ------>ZmHOX2a(2)          --------->ARR14(2)                                             <------ZmHOX2a(2)           <---------ARR14(2)                   --------->ARR11(3)       <---------ARR14(2)         --------->LBD16                   <---------ARR11(3)  <---------ARR14(2)             <---------HSFB2a(2)              <---------AHL20(2)       --------->ARR14(2)             --------->HSFB2a(2)          --      ----------->GT1    <-----------GT1    --------->ARR14(2)        --------->ANAC46       <------- --------ANAC58   --------->YAB1      <---------CCA1(2)  <----------DOF2 <---------GLK1(2)  <-------- --------ANAC58  <---------YAB1  <-----------GT1  <---------ALFIN1   <---------LBD16        <--------   gtcttgtgtcgaaaaatttatgatattaaacggtttcaccatatccgatctgccacctcctttgctatttctccggaatctcctcttgcatattgcttct  6421800                                                    --------->YAB1                                                    <---------ICU4                                                    --------->ATHB12                  --------->RAP2.6(2)               <--------HAHB4               --------->ANAC58                    <---------ATHB12               --------->ANAC58                    <---------YAB1               --------->ANAC46                    --------->ICU4                                   <             ---------->DOF2                    <---------AHL20(2)         --------->ZAT14          < ------->At4g35610----------->RAV1(1)       <---------AHL20(2)         <-----------GT1        <------NtERF2 ---DOF2  --------->ANAC46                <---------RVE1(1)          --------->YAB1          -------- -ANAC58  --------->ANAC58               --------->ARR11(3)         <---------YAB1         <---------LBD16 -ANAC58  --------->ANAC58               <---------GLK1(2)      ----------->GT1     <---------AtLEC2<   ctgcttaaacacacacaaagccacaattagacgattttgttcagatttttttaatcattacttagagagtattatactatacacttacatggacgcggag  6421900                                     <-----------RAV1(2)                                    <---------ZAT14                                    <-------TEIL                                 <---------ANAC58                                 <------MYB46(1)                                 <------MYB83                                <---------MYB46(3)                --------->AtMYB61<---------ANAC58       --------->LBD16          <---------DEAR3(1)       ------>NtERF2            --------->MYB111(1)      <---------LBD16           --------->MYB111(2)     <------NtERF2             --------->ALFIN1     <---------LBD16           <---------ANAC46     --------->ATERF1(1)       <---------MYB55(1)    <---------RAP2.3(1)      --------->MYB55(2)    ------>NtERF2--------->MYB52(1)--------->ALFIN1   --------->DEAR3(1)        <---------MYB46(3)   <---------DEAR3(1)       <---------DEAR3(1)  --------->ATERF1(1)       --------->ALFIN1  <---------ANAC46  --------->RAP2.3(1)       <---------AtMYB61--------->At4g35610  <------NtERF2--------->MYB46(3)<---------ANAC46 <-----------HVH21       ========================RAV <---------RAP2.3(1)     <-----------RAV1(1) <---------LBD16 <---------DEAR4(2)      --------->ALFIN1  --------->ATERF1(1) <---------ATERF1(1)     <---------AtMYB61--------->ZAT2                                 *TSS ---------DEAR3(1)     <---------MYB46(3) --------->At4g35610                            <----------- ---------ANAC58<---------ALFIN1--------->MYB55(2)                                 ----------->GT1 ->LBD16<------NtERF2<---------MYB52(1) <------ZmHOX2a(1)                 --------->ATHB12       ---- ---------ANAC58--------->DEAR3(1)<---------PCF2                        <---------WOX13(1)       ----   aggcgtcgccgggagtcaccaccggttgtggtggtgggtgcaggagcagcgggagagtttgccatataaaactgatggattgggacagtagaattggaca  6422000                                                                <----------DOF2           <------ZmHOX2a(1) -CBF<------ZmHOX2a(1)                    <-----------GT1  --------->GLK1(1)             ----------->GT1 ----->ANAC58                         <----------DOF2  <-----------GT1                  --------->MYB59 ----->ANAC58                 --------->MYB52(1)    <---------CCA1(2)<-----------GT1  <<<<<<<<<MYB98   aggaagaggagagagcaaatataggtgagacataacgtctcttttaatcttcttatatcacatttcctttgtttctatttttgtttttgttaggaaataa  6422100                                                                             <---------AHL20(1)                                                                             <---------AHL20(2)                              ---------->DOF2                                --------->AHL20(1)                           <-----------GT1                                   --------->AHL20(2)                      <----------DOF2                                     --------->YAB1                     <---------DAG2                                      <---------YAB1                   ------>MYB83 ----------->GT1     <----------DOF2     --------->AHL20(2)                   ------>MYB46(1)                  <---------DAG2      <---------AHL20(2)                  <---------ALFIN1             <-----------GT1     <---------YAB1            <-------                 --------->MYB46(3)<---------AHL20(2)            --------->YAB1        <---------AHL20(2)   gaaaattgtatttttcatacccacctttttaacaaagttaatttttgattttctctttttgaagttatcgtgattttaataaaatgttttaaattgtgga  6422200                                                                               --------->YAB1                                                                         ------>MYB46(1)                                                                         ------>MYB83   -------------                                                                       <---------MYB111(2)                                                                       --------->AtMYB61<----------DOF2                                                                       --------->MYB46(3)                                                                       <---------MYB55(2)                                                                       <---------MYB46(2)                      --------->ANAC46              <---------WOX13(1) <---------MYB111(1)   --------   <---------REM1(1)<-----------GT1               --------->ATHB12    --------->ANAC46  ============= --ANAC46  <----------DOF2                       <---------YAB1    --------->ZAT18<---------ICU4   taatattgtagctctttagtttaaactccattctcagtttgtgactctcttatgattgacatatatatgtccaccaaactttgatcatttctttgtaaag  6422300                                                                                        --------->AHL20(1)                                                    <---------DAG2                      <---------ARR11(3)         --------->AHL20(2)                         <----------DOF2                     --------->ARR11(3)        --------->AHL20(2)                      <-------TEIL                            <---------AHL20(1)        <---------AHL20(1)                     --------->CCA1(2)                      <---------ARR11(3)        <---------AHL20(2)                    <---------ARR14(2)                      --------->AHL20(1)     --------->AHL20(2)                       --------->ARR14(2)                      <---------AHL20(1)     --------->ATHB51<---------ICU4           --------->ARR11(3)                     --------->YAB1  --------->TOE2(3)  --------->YAB1       ---------->DOF2                      --------->ANAC58  --------->YAB1    --------->ICU4   --------------->AGL15                     --------->ANAC58 -->AGL15<---------AHL20(2)          <---------------AGL15  <---------ATHB12   --------->ANAC46     - -->DOF2--------->AHL20(1)        <-----------GT1  --------->ANAC46      --------->AHL20(2)<---------AHL20(2) ====================================================MADS_MADS     --------->ANAC55(2)--------->ARR11(3)   agaaccataatttattttcaaaataatgagtttttttttcaaaataaagatacactttaccaataactcacttgattatataagcaaaaatatttttttg  6422400                                        --------->ANAC58                                        ----------->GT1                                        --------->ANAC58                                   <---------ZAT6                            <---------AHL20(2)             <---------AHL20(2)                            --------->AHL20(2)    <-----------GT1                           ---------                          --------->AHL20(2)  <---------ARR11(3)      <-------TEIL         --------->DAG2                        --------->AHL20(2)    --------->AHL20(1)      ------->TEIL       ---------->DOF2                       <---------AHL20(1)     <---------AHL20(1) <---------ANAC58 <---------ZAT2                       <---------ARR11(3)     --------->AHL20(2) <---------ANAC58 --------->ZAT2          --------->ATHB12<---------AHL20(2)  <---------AHL20(2) <---------AtLEC2 --------->At4g35610 ---------->GT1        --------->AHL20(1)     --------->ARR11(3) <---------ANAC46 <---------At4g35610   aaaggttttaagtcattgaattcaatatatatatatagtggaaagaaatatattactatgttttattgcatgtacatattgtacagctggagaaaggtaa  6422500  Previous    Next  AGI:  At3g18660.1    Description:  PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups. similar to PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G77130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46444.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33316.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33317.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR00 Range:  from: 6419066    to: 6421989    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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