Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <-----------TGA1                                                                            --------->At4g35610                                                                          --------->YAB1                                                                        --------->GLK1(2)                                                                   --------->At4g35610                              --------->AHL20(2)             ------>ZmHOX2a(1)   <-----------HVH21          ---------->ID1      <---------AHL20(2)   --------->REM1(1)--------->YAB1    <---------ARR14(2) ---------GT1   <-----------GT1                    <---------ALFIN1<---------At4g35610--------->ARR14(2)   taactaaactttgtcatattactctaaactaattaaactatgagattgaagctacaccttctcctcttcatcagaatcagaagcgtcagaactgctactc  6407400                        --------->ZAT2                                          <---------ANAC58                <---------MYB52(1)                                              <---------AtLEC2        <---------TOE2(2)        ------>ZmHOX2a(1)      <----------DOF2     <---------ANAC58       --        --------->MYB59 <---------At4g35610      <---------ATHB12           <---------ANAC58 ------>ZmHOX2a(1)        <---------TOE1(2) <----------DOF2      --------->WOX13(1) <----------DOF2        <---------ARR14(2) ----------------->AGL1 <---------ZAT2   ----------->RAV1(1)    <---------At4g35610      --------->ARR14(2) <-----------------AGL1 --------->At4g35610 --------->TOE2(3)<---------At4g35610<---------ANAC58 <---   tctaccttcttaggtaccgttttctcagctttctccttctgaacaacatcaatcaactctttcttctgcttcttcgtaacttgcatgtccaaatcctctt  6407500            --------->TOE1(2)            --------->TOE2(3)            --------->TOE2(2)                      ------>MYB46(1)  <---------CCA1(2)                                ------>MYB83 ------->TEIL                                    <---------MYB59            ---------->DOF2 ------->LBD16                                   --------->TOE2(3)      <----------ID1 ------LBD16<---------MYB59                    --------->GLK1(2)    ---------->DOF2            <-----   ccgcatctctcttacctaagaaaaattcaaaatagaatatggttttgagaacctaattcttgagaaggcataaagaaacaaagcacaactaattccaaca  6407600                                                                           <----------DOF2                                                                          <---------ANAC46                                                                     <---------ANAC58                                 ------>ZmHOX2a(1)                   <---------ANAC58                                --------->TOE2(3)                   --------->ATHB12                             <---------ARR11(3)                  <---------ANAC58       <-----------RAV1(2)                       ------->GAMYB             ----------->GT1 <---------ANAC58   ---------->DOF2                    --------->MYB52(1)      ---------->DOF2   <----------DOF2  <---------YAB1                    <-----------GT1    --------->TOE2(3)   ------->TEIL   <---------ANAC58          - ----ALFIN1       <---------ATHB12    ----------->GT1     <-----------GT1 <---------ANAC58  ---------   ctctcgttcaacatactccaattaacagcaaaatcctaaatcgtcaaaaagaagaaaattgaacctttcttgagtggctttgtcattgaagcaggtgttt  6407700                                        --------------->AGL15                                       --------->ANAC58                                       --------->ANAC46                                          ----                                --------->YAB1                                                   ----                                <---------ICU4                                        --------->ATHB12                        <-------TEIL --------->ZAT6                                   <---------ICU4-                       --------->ARR14(1)  ---------->DOF2                           --------->ICU4 <   ----------->GT1    <---------GLK1(2)--------->ANAC58    >>>>>>>>>TBF1             <---------YAB1 < ---------->RAV1(2)   --------->ARR11(1)<---------------AGL15    >>>>>>>>>TBF1  ---------->DOF2 <---- >ALFIN1 --------->MYB52(1)   --------->GLK1(2)----------->GT1>>>>>>>>>TBF1  <------ZmHOX2a(1)<------   caacctggaaaaaacagagttttagattcgataatcttcacactcaaaagagtaacaagaagaagaagaagaagtagaaggagaaagatgattacttcgg  6407800                                                                    <------MYB83                                       --------->ANAC58         --------->ZAT2       <---------ANAC58                --------->ANAC58         <---------ZAT2       <---------ANAC58        ------>ZmHOX2a(1)            --------->MYB52(1)    <---------GLK1(1)        ------>ZmHOX2a(2)              -------->P    --------->GLK1(1)       <------ZmHOX2a(2)             <---------MYB111(1) ------->HVH21             --------->ARR11(3)            <---------At4g35610    ----------->GT1   <-- ------->TGA1              --------->ARR14(2)            --------->At4g35610   --------->GLK1(2) ---- -------->ANAC55(2)        <---------ARR11(3)            --------->ZAT2    --------->HSFB2a(2) <----- ---------ANAC55(2)        --------->AGP1             <---------At4g35610  <---------HSFB2a(2) <----- ---------ANAC46           <---------ARR14(2)     <---------REM1(1) <------MYB46(1)            <----- -------HVH21              <---------GLK1(2)--------->ARR14(2)  <---------STY1(2)    ---------->DOF2 ---DEAR3(1)             ----------->ARR10  <---------ARR14(2)  --------->STY1(2)--------->TOE1(3)---   tgacggatttcttactagacttgcccatagatcctgatcacaagcgaaactggtgtagcagctaccagctaggtttacgagaagcttaaaagttttcgcg  6407900          <---------ANAC58          <---------ANAC58   ----------->GT1        <-----------GT1 ----------->ARR10 -------ZAT14       --------->ANAC46 ----->ALFIN1       --------->O2                          <---------At4g35610 ----ANAC58        <---------LBD16  <---------AHL20(2)    --------->At4g35610 ----ANAC58<----------DOF2--------->ARR14(2)            <---------ANAC58                 <----------DOF2 ----ANAC46<---------DAG2 <---------ARR14(2)            <---------ANAC58         --------->ALFIN1 <-- ------>REM1(2)<-----------GT1    <-----------TBP  <------------CBF       <------------CBF   <-------   tgtagggtttttgcttttttccacgggagatttgttatttataggtagagagagattggcttctgaatttttgggaaattgaagtgtcggtctttttatt  6408000                                             ------->MYC3                                             <-------MYC3                                            --------->O2              ------>ZmHOX2a(1)           <---------ALFIN1             --------->TOE2(3)           <---------WRKY12             --------------->AGL15     --------->ORA47(1)            ----------------->AG      --------->DEAR3(1)            =========================================================================================       <---------DAG2                --------->MYB46(3)                                             <       <----------DOF2               --------->DEAR3(2)                    ---------->ID1 ---------->DOF2 -------YAB1----------------->AGL1  ------->TEIL   --------->ANAC46-------->P             =========== --AHL20(2)---------->ID1 --------->TOE2(3) --------->ANAC46      <-----------GT1       XXXXXXXXXXXXX   ttgatattcctttttccttatatgtgaaacttaatctgaaccgtccacgtttcaagcgatatgttaacttaccatttgttttttttttggacaaaagata  6408100         <---------TOE2(3)       <---------AHL20(2)                                                             --------->AHL20(2)      --------->AHL20(2)                                                          ----------->GT1   --------------->AGL15            <---------TOE1(2)                             <------MYB46(1)   <---------------AGL15  <---------ANAC55(2)                                     <------MYB83  ----------------->AGL3  --------->O2                                         <---------ZAT2 ===================================MYC_MYB                                  --------->ANAC58 -------->P <---------YAB1<---------O2                                       --------->ANAC46     --- ===================MADS_MADS ---------->ARF1           ------->MYC3         --------->ANAC58-------- -----------GT1           --------->ANAC55(2)           <-------MYC3        <---------LBD16 <-------- ===================================bZIP_DOF       <-----------GT1        <---------REM1(2) <-------- XXXXXXX>MIR169D-G        --------->TGA1a ----------->GT1          <-----------GT1<---------MYB46(3)   acttaccatttaatgtgattctctagacacttgactcccaagttttgtaaattttacatgtgtcaaaatttacatttacacggctggttaaaataagatt  6408200                                                                       <---------ICU4                                                                       --------->YAB1                                                                       <--------HAHB4                                                                       --------->ATHB12                                                                      <---------ATHB12                                                                    --------->WOX13(1)                                                                    <-----------GT1                                                        --------->AHL20(1)      ------------>CBF    <-------TEIL                    <---------ATHB51    <---------ARR11(3)    --------->ANAC58   --------->CCA1(2)                <---------AHL20(2)  --------->AHL20(2)    --------->ANAC58 ------->DOF2                   <---------AHL20(2)      <---------AHL20(1)    --------->ANAC46 --->GT1                 ---------->DOF2        --------->CCA1(2)  <---------AHL20(2) -TOE2(3)           --------->AHL20(2)       <---------ZAT6   <---------TOE2(3)>>>>>>>>>>>>>>>>>LFY -YAB1    <---------HSFB2a(2)   --------->AHL20(2)--------->AtLEC2 --------->AHL20(2)       ---------   aaaagatacattatagaaggaattaaaaaaagaataaaataatgggagtgatatgcaaaatattaagaattaatcatttctcgccaatgtgttcaaaagc  6408300  Previous    Next  AGI:  At3g18610.1    Description:  ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding. similar to ATNUC-L1/PARL1 (PARALLEL 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to protein localized in the nucleoli of pea nuclei; ORF; putative (GB:AAA74208.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 6404089    to: 6407828    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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