Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------------AGL15                                                <                         <---------AHL20(2)        <---------ARR11(3)    ---------->DOF2            <                         --------->ATHB12        --------->ANAC58   --------->GLK1(1)             <--                         <---------ICU4          --------->ANAC58--------->LBD16                <----                        <---------AHL20(2)  --------->ZAT14     <---------HSFB2a(2)             <---- <----------DOF2  <---------ZAT6            <---------ZAT14     --------->HSFB2a(2)  <---------ARR11(3)   ctactttccgactagaattggtgttatttattgcaattagaggcactgtacaagctctaacttctcccagaaatcgaaagaaaacgagaacttacatttg  6372200                                   <----------DOF2          <XXXXXXXXXXXXXXXXXXXXMIR413    <---------At4g35610      <---------ANAC46            <---------ANAC58 ------MYB83                      <---------ANAC58          --------->AHL20(2) ------MYB46(1)               <---------ANAC58--------->HSFB2a(2) ------P--------->HSFB2a(2)   <---------ANAC58<---------HSFB2a(2)<-------TEIL --MYB46(1)         --------->GLK1(1)   ------->TEIL <---------AHL20(2)             <----------DOF2 --MYB83<---------HSFB2a(2)  <---------At4g35610     --------->AHL20(2)          --------->ARR11(3)--   gtagggttttgtagaacgagagaaacccttgagcttgctttgcatcttccaaaaattaaaaaaaaaatgcataacaaatatcagaccttttacaaaaccc  6372300                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                 <---------HSFC1(2)             --------->GLK1(1)                                                   --------->HSFC1(2)   --------------->AGL15                                                     --------->LBD16   <---------------AGL15                                                    <---------HSFB2a(2)  <-----------------AGL1                                                    --------->HSFB2a(2)  --------->ANAC46 <---------ARR14(2)                                      <---------LBD16  ----------------->AGL1          ----------->GT1                       --------->ZAT2  <-----------------AG--------->ANAC58                         <---------MYB59<---------MYB52(1)-----  ----------------->AG--------->ANAC58                   --------->ZAT6 --------->At4g35610    ------  ----------------->AGL2        ---------->DOF2         <---------TOE2(3)<---------ARR14(2)    ------ <-----------------AG --------->ANAC46                 <-----------GT1  <---------ZAT2         <----- -------->DOF2     --------->ARR14(2)            <---------TOE2(3)      <---------At4g35610    ------   ataaacccaattgggaaatcgaatacgaaaatgagaaagaaaaaaaaaactagggtttaacattacccaatttcagctccggaagcttgttctgttcctc  6372400                                                 <---------HSFB2a(2)                                                 --------->HSFB2a(2)                                           -------->P         --------->ATHB12                  ------>MYB46(1)       <<<<<<<<<<<<<<<<<LFY                ------>MYB83       >>>>>>>>>>>>>>>>>LFY               --------->MYB55(1)      --------->ANAC46                   <---------MYB59   <---------At5g28300                   <---------MYB46(2)  <-----------GT1                        <---------MYB111(2) ---->ANAC46                             <---------MYB111(1) >ZmHOX2a(1)                        <-----------HVH21                        <---------ANAC58 --->HSFB2a(2)                     --------->TOE1(3)  <---------MYB52(2)     <---------ANAC46 ----HSFB2a(2)          ---------->DOF2 <---------At4g35610                  <---------ANAC58-------- --->LBD16         --------->CCA1(2)------>ZmHOX2a(1) --------->MYB46(3)  <----------DOF2    <-------   gaaattaccctccattggaagatagagaaagctaaatccttcacctaccttctgcaactacggtgcaaatgttcttctttcgtggtttttcagtggaact  6372500                                                                        ------->MYC2                                                                        <-------MYC2                                                                    <------NtERF2                                                                    --------->ATERF1(1)                                                                   <---------RRTF1(1)                                                                   ------>NtERF2                                                                   <---------DEAR3(2)                                                                   <---------RAP2.3(1)                                                                   <---------ORA47(2)                                                                   <---------RAP2.6(1)                                                                   <---------ERF1                                                                   <---------DEAR4(2)                                                                   <---------ATERF1(1)                                                                  <---------ATERF1(2)                                                                  <---------RAP2.3(2)                                                                  --------->DEAR3(1)                                                                  <---------RAP2.3(3)                                                                  --------->ATERF1(2)                                                                  <---------DEAR3(1)                                                                  <---------RRTF1(2)                                                                  <---------RRTF1(3)                                                                 <---------ABI4(1)                                                                 --------->ATERF1(1)                                                                <---------ATERF1(1)                                                               --------->DEAR3(1)                                                               ------->GAMYB                                                              --------->MYB46(3)                                                              --------->DEAR3(2)                                                              <------------AtMYB77                                                             --------->MYB52(1)                                                          <------NtERF2 <-------MYC3                                                          --------->ATERF1(1)                                                         ------>NtERF2 <------NtERF2                                          <------NtERF2  --------->RAP2.6(2)                                         --------->LBD16 <---------ATERF1(1)                                        <---------ANAC58 <---------RAP2.3(1)                                        >>>>>>>>>>E2Fa  <---------ATERF1(2)                                        <---------ANAC58--------->ATERF1(2)                                       <<<<<<<<<E2Fd    <---------ANAC46------->MYC3                                       <<<<<<<<<E2Fc    <---------RAP2.6(2)     <---------TOE2(3)                                       <---------LBD16 <---------LBD16 <---------ANAC58                              <------NtERF2        --------->ARR14(2)  <---------ANAC58                            <---------ANAC46       <---------ARR14(2)<---------ANAC46             <--        <----------ID1   <-----------RAV1(1)---------->DOF2  -------->P<---------ANAC46           <--    ---------->DOF2   <---------AHL20(2)<---------ANAC46<---------DEAR3(1)      <---------TOE1(3) <-- ->ARR14(2) --------->HSFB2a(2)   <---------ARR14(2)   --------->RAP2.6(3)*TSS <-----------GT1<------ --ARR14(2) <---------HSFB2a(2)   --------->ARR14(2)<---------WOX13(1)------>NtERF2   <----------DOF2   ggaatcgaaagcgactagaagaaatttatggtgtcgaatttggcgggaaagcggattggcggcaaccggcggcgcgtgtattaacgttctttgagaccag  6372600                                                                                      <---------YAB1                                                                                 <---------------AGL15                                                                                 --------------->AGL15                                                                               -------->P                                                                               ------>MYB46(1)                                                                               ------>MYB83                                                                              --------->MYB55(1)                                                                             <---------MYB46(2)                                                                             --------->MYB46(3)                                                                             <---------MYB111(1)         ------------>CBF                                                    <---------MYB55(2)     --------->ICU4                                                          --------->AtMYB61 ------------>CBF                                                            <---------MYB111(2) --------->ZAT18         --------->AHL20(2)                            --------->ANAC58 <---------ZAT14  <------MYB83                                         --------->ANAC46 -------ANAC58    <------MYB46(1)                                      --------->ANAC58     --------- -------ANAC46   --------->MYB59                           <----------DOF2 ------>NtERF2<---------ANAC46 -------ANAC58   <---------AtMYB61        --------->AHL20(2)         --------->MYB52(1) <---------ANAC58 -----RAV1(2) --------->ATHB12--------->ARR11(3)    <------------CBF <---------DOF5.7(2)<---------ANAC58   gcgtgcaatgtttcaatgtttggtctataaaatatcaaggcccattaattctcatattgggcttactgggctaacgacacctaccattttgagtgtgtta  6372700                                                               --------->ATHB51                                                               --------->AHL20(2)                                                               --------->ATHB12                                                               <---------AHL20(2)                                                              --------->AHL20(2)       <---------AHL20(2)                                     <---------AHL20(1)     --------->AHL20(2)                                       <---------AHL20(2)                -----     <---------AHL20(2)            <----------DOF2          ------>MYB46(1)                    <-----   --------->AHL20(2)     --------->GLK1(1)                 ------>MYB83              <-----------GT1  --------->AHL20(1)    <------ZmHOX2a(1)                 <---------MYB59          <---------YAB1  <---------AHL20(1)  <---------TOE2(3)                ------->GAMYB       --------->YAB1  <--------- --------->AHL20(2)   <---------TOE1(3)               --------->MYB46(3)   <--------ATHB1  <---------DAG2 -->GT1--------->AHL20(2) <---------GLK1(1)        <---------WRKY38(1)    <---------YAB1<-----------GT1   caaatatatatatatacttctactaaggatttcatttctttgtagtaacatgatcaacgaccaaattatttggacaatgatagttatttttcactttatt  6372800                            <---------AHL20(2)                            --------->AHL20(2)               <------MYB83                            --------->AHL20(1)               <------MYB46(1)                       <---------AHL20(2)                    --------->HSFB2a(1)         <---------AHL20(2)--------->AHL20(2)                <---------HSFB2a(1) ---->AHL20(2)  ------>ZmHOX2a(1)                       --------->ALFIN1 ----YAB1<---------YAB1--------->AHL20(2)       --------->MYB52(1)        ---------->DOF2 -DOF2  <---------AHL20(1) <---------AHL20(2)  ---------->DOF2   --------------->AtSPL8          <---   atttagataatattattcctgtttataaattaaattggaaaactttggacaaagggaagtggaaggttttgtactataaagcactaaattgcatatagag  6372900                                                                                    <---------DAG2                                                                                    <----------DOF2                                                                        ----------->GT1            <-                                    ------->TEIL        <---------YAB1 --------->MYB59            <--          <----------DOF2       <---------TOE1(2)       <---------TOE2(3)      <-----------GT1    ---  <---------YAB1        ---------->DOF2    <----------DOF2            <-----------RAV1(2)    <------- ---ZmHOX2a(1)      ----------->RAV1(1)  <---------YAB1 <---------TOE1(3)    <----------TaMYB80------   gacgatgatggcctttgatgagccacaaaagtcgtatgaacttatctttatgtcatttatggttccaaatagtcaggttatattccctttttctccttta  6373000       <---------AHL20(2)                                                                         <--   --------->ATHB12                                                                               ---   <---------AHL20(2)                                                                             <--  <---------YAB1                                                                                <---- --------AHL20(2)                                                                               <---- -------AHL20(1)                                                                               <----- ------>AHL20(1)                                                                               ------ ---DOF2                --------->ARR11(3)                                                     <----- --->AHL20(2)  ------>ZmHOX2a(2)             ------->TEIL <------ZmHOX2a(2)        <---------ANAC46   tatatttattgaattgatcccatatttatcttgaaatattcttcatgaatttggaattggatcacattataagtttttgaaaatggtgttgacagaagat  6373100  Previous    Next  AGI:  At3g18524.1    Description:  MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding. Identical to DNA mismatch repair protein MSH2 (MSH2) [Arabidopsis Thaliana] (GB:O24617;GB:Q9SQ60;GB:Q9ZR93); similar to MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) [Arabidopsis thaliana] (TAIR:AT4G25540.1); similar to DNA mismatch repair protein MSH2 (MUS1) (GB:Q9XGC9); similar to unnamed protein product [Vitis vinifera] (GB:CAO68012.1); similar to DNA mismatch repair protein [Petunia x hybrida] (GB:AAT67044.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein, MSH2; (In Range:  from: 6368016    to: 6372574    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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