Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------WOX13(1)                                                                              --------->YAB1                                                                              <------------ATHB5                                                                              <---------ICU4                                                                              <--------ATHB1                                                                              --------->ATHB51                                                                             <---------ATHB51                                                                         ----------------->AGL1                                                                         <-----------------AGL1                                                                         ----------------->AGL2                                                                         <-----------------AG                                                                         ----------------->AGL3                                                                         <-----------------AGL2                                         <---------YAB1             <---------AtLEC2   <---------YAB1                                       <-----------GT1            <-----------GT1    <---------At4g35610                              ---------->DOF2                 <---------DAG2 <---------ATHB12                              --------->MYB52(1)              <----------DOF2--------->ICU4                          <---------------AGL15        <---------At4g35610<---------------AGL15                          --------------->AGL15        --------->At4g35610--------------->AGL15                         <-----------------AGL3     <---------At4g35610  <-----------------AGL3  ---- <---------ANAC55(2)     ==================================================================MADS_MADS --------->ANAC55(2)     <-----------------AGL1     ------>ZmHOX2a(1)    ----------------->AG  <-----   gttaagtatttgtcaattgaaacttgttctactaaaggaaattacaattgtttcctctgcttagctttttgcattaccaataatggcatatgatagactt  6327700                                                                             --------->ANAC46                                                                             --------->ANAC58       <                                                                             --------->ANAC58       <                                                      --------->DAG2         <---------ANAC55(2)  <--                                                 <----------ID1              --------->ANAC55(2) <---        --------->TOE2(3)                      ---------->DOF2             --------->YAB1    <-------    ------>ZmHOX2a(1)                      <----------ID1               --------->YAB1       -------- ----->AHL20(2)      <---------AHL20(2)  ---------->DOF2           --------->ICU4<---------ARR11(3)-- -----DOF2   ---------->DOF2       --------->REM1(2) ---------->DOF2    <---------ICU4  <---------MYB52(1)   taaatcctaatctcaaaaagaattttttttttttctgtgaagaaaaagaaaaagaaaaagtggaatggaatgaataatcacgaaatctccgttttttaat  6327800                                                                                            ---------                                                                                            ---------                                                                                           <---------TOE2(3)                                                                                           <---------YAB1                                                                                         <---------ICU4                                                                                         --------->YAB1                                                                                         -------->HAHB4                                                                                        --------->ICU4                                                                                      <---------ICU4                                                                                     <---------------AGL15                                                                                     --------->ICU4      <---------ANAC46                                                               --------------->AGL15     --------->ATHB12                               <---------AHL20(2)              ----------------- ---------TOE1(3)                                   --------->AHL20(2)              <---------------- ---------TOE2(3)                           <---------ANAC58                        ----------------- -------AHL20(2)                            <---------ANAC46                        <---------------- ------AHL20(2)           ---------->DOF2   <---------ANAC58                        <---------------- --AHL20(2)       <---------AHL20(2)      <---------AHL20(2)                    --------->YAB1 ->AHL20(2)     <---------TOE2(3)      <---------ICU4  <---------YAB1    <----------ID1 <---------ATHB51 -------->DOF2<---------AHL20(2)      --------->ICU4<---------YAB1   ---------->DOF2<----------------   ttaaagttgattgtatttaatgaattgtcaaagaagagtcttaattacttgcatattattaaactatgggttaaagaaacaaaaatactaattatggtaa  6327900                                                    <---------AHL20(2)                                              --------->ANAC58                                              --------->ANAC55(2)                                              --------->ANAC58                                              <---------ANAC55(2)                                            --------->MYB52(1)                                         <---------TGA2(1)                                         --------->bZIP60(1)                                         <---------ANAC58                                         --------->TGA2(1)                                         <---------bZIP60(1)                                         <---------bZIP60(2)                                         --------->O2                                         <---------ANAC58                                         <---------TGA1a                                         =======================bZIP_DOF                                         --------->ANAC58  <---------WOX13(1)                     <---------ANAC55(2) -->GT1                                  <---------ANAC46 >YAB1                                   <---------O2---------->DOF2                            ----- >AGL3                                   --------->ANAC55(2)    --------->ANAC58                ----- -AGL3                                   --------->ANAC58  --------->DAG2                   --------- >AGL2                                ----------->HVH21   ---------->DOF2                   --------- -AGL1                                ----------->TGA1<---------TOE2(3)                     --------- -AG                            <---------YAB1----------->GT1   --------->ANAC58         <---------ZAT18 -AGL2            <---------ETT(2) <---------TOE2(3)--------->AHL20(2)            <---------YAB1-----   ttagattgacaaatggtatgtagacaagaagcttattaatgtgacgtaacgtaattaaagtaaagtaagcattcaattctacttaatattgtccacacaa  6328000                                                                    --------->MYB52(1)                                                                    ------>MYB46(1)                                                                  <---------MYB111(2)                                                                  <---------MYB46(2)       --------->AHL20(2)                                         <---------MYB59<---------ALFIN1  --------->AHL20(2)                                              <---------MYB111(1) --------->bZIP60(2) <---------YAB1                                                  --------->ANAC46--------->AtMYB61 ---->ANAC58                                             <---------DAG2      <-------TEIL ---->ANAC58            <---------AHL20(2)               <----------DOF2 <---------TOE2(3)  --------- >ANAC58               --------->AHL20(2)     <---------YAB1     <---------At4g35610--------->AtMYB61 >ANAC46       ---------->DOF2              --------->YAB1       --------->ANAC55(2)<---------ALFIN1 >ANAC58   --------->AHL20(2)   <-----------TGA1     <---------ZAT18------>MYB83 --------->DEAR3(1) < ---->ANAC46--------->AHL20(2)<XXXXXXXXXXXXXXXXXXXXMIR3933     <-----------GT1  --------->MYB46(3)  <   gtcattatataaaataaaaaaggaattaaaacgtcgtcattttgcttcataatagaccactttattcacctaactaaggtccaccaccacttcataacag  6328100                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                             --------                                                                                             --------                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                        <---------ERF1                                                                                        <---------ATERF1(1)                                                                                        <---------ORA47(2)                                                                                       <---------ATERF1(2)                                                                                       --------->ATERF1(2)                                                                                       <---------RAP2.3(2)                                                                                       <---------DEAR3(1)                                                                                       <---------RAP2.3(3)        <-----------TGA1  <---------ARR11(3)                                           <---------RRTF1(3)        <-----------HVH21 <-----------ARR10                                            <---------DREB2C(2)       --------->ANAC46   --------->ARR14(2)                                           <---------ANAC46     <---------ANAC58     --------->ARR11(3)                                           <---------RAP2.6(2)     <---------ANAC46    --------->CCA1(1)                                             <---------RRTF1(2)     <---------ANAC58*TSS--------->RVE1(1)                      <----------DOF2   <---------ICU4  <-- >MYB52(1) --------->WOX13(1)  <-----------GT1        --------->TOE1(3)--------->ARR14(2)--------->RAP2.3(1) ---------ANAC58   --------->AHL20(2)             ---------->DOF2      --------->GLK1(2)<---------RAP2.3(1) ---------ANAC58  --------->AHL20(2)   <----------DOF2--------->TOE2(3)<---------ARR14(2)--------->ATERF1(1)   tttcgtttcgcgtcagtcaaataaaaaatatcttcaccattcttttttcaaacaaagcttaattctctttgagaatccgtctagtaatggcggcgaagca  6328200                                                                                    <---------ARR11(1)                                                                                    <-----------ARR10                                                                                    --------->GLK1(2)                                                                                    ------->TEIL                                                 <---------ICU4             ----------->RAV1(1)                                                 --------->YAB1             <---------DDF1                                                 <--------ATHB1            --------->DEAR3(1)                                                --------->ICU4             --------->At1g77200                                                <---------ATHB12           ----------->HVH21      <--                                                <---------ATHB51           --------->DREB2C(2)    ---    <-----------HVH21                        <---------------AGL15         --------->DEAR4(1)<------ZmHOX2a(2) -------HSFC1(2)                             --------------->AGL15        --------->DEAR3(2)--------- ------>HSFC1(2)          --------->MYB52(1)----------------->AGL2       <---------At5g28300<-------- ------>HSFB2a(1)         --------->CCA1(2) ----------------->AGL3     <-------TEIL<---------ARR14(1) ->ANAC58   --------->ANAC58        <---------HSFC1(2)               <---------ARR14(2)    ------->GAMYB ->ANAC58   --------->ANAC58        --------->HSFC1(2)               <---------GLK1(2)   <---------TOE2(3) -------HSFB2a(1)     <---------HSFB2a(2)   <-----------------AGL3   --------->ARR14(2) --------->MYB52(1)   aggttccttcaggcatggaatactcgagaaacgggagaggcttctctccaataatggtttctccgatttcagattcaccgacatcgaatctaacgatcta  6328300                                                                                     <---------------                                                                                   --------->ANAC46                                              <---------ANAC58           <---------LBD16                                              <---------ANAC58         <---------ARR11(3)                                        <-------GAMYB                  --------->ARR11(3) -------HSFB2a(2)                      <-----------RAV1(1)             <---------ARR14(2) ------>HSFB2a(2)             <---------MYB52(1)   ----------->GT1     --------->ARR14(2)         <-- >ARR11(3)                   <-------GAMYB<---------MYB46(3)          --------->CCA1(1)          ---- -ARR11(3)     <---------ETT(2)  <-----------RAV1(1)                  --------->RVE1(1)      --------   ctcgaaaacgaaaactgtggacgaagaacacggttatgttgctgttgttcgtgtggtaatctatctgagaaaatatctggagtctacgacgatgctaaag  6328400                                            <---------ARR14(2)                                            <---------ARR11(3)                                            --------->ARR14(2)                                            --------->ARR11(3)                                        ---------->DOF2                                     <---------HSFB2a(2)                                     --------->LBD16         --------->ATHB12                                     --------->HSFB2a(2)    <---------YAB1            <---------ANAC58       ------>ZmHOX2a(2)        <---------TOE2(3)             <----------DOF2       <------ZmHOX2a(1)         --------->ARR14(2)     --------->LBD16                <---------ANAC46       ===================================HOX2a_HOX2a   <---------At4g35610       --------->MYB52(2)   <---------ANAC46              <---------ARR14(2)     --------->At4g35610       <---------MYB46(3) ------WRI1 <---------ANAC58<-----------ARR10          --------->ANAC46    ----------->HVH21 -------REM1(1)             --------->ARR14(2)        <---------LBD16      ----------->TGA1 ----->ARR11(3)             <---------ARR14(2)------>ZmHOX2a(2)  <------MYB83 <---------YAB1 <------- -->DOF2---------->DOF2     --------->GLK1(2)<------ZmHOX2a(2)   <------MYB46(1)  <-----------RAV1(1)   atgtagcgaggaaagcttgggagatgggagtatctgatccgagaaagatcgtcttctccgctaagattggtcttgctctgacgattgttgcgcttttgat  6328500                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->ARR14(2)                    <-----------ARR10                    <---------AGP1                    <---------ARR14(2)                    <---------ARR11(3)                    <---------ARR11(1)                    --------->ARR11(3)                   <---------ARR14(1)                  --------->LBD16                <---------LBD16             ------>MYB46(1)             ------>MYB83           <---------MYB59                                    <------NtERF2        --------->ARR14(2)                                  <---------DEAR3(1)     --------->At5g28300        <---------ARR14(2)    <---------ARR14(2)            xxxxxxxxxxxxxxxx>smallRNA(i)       =====================HOX2a_HOX2a                    xxxxxxxxxxxxxxxx>smallRNA(i)       ======================HOX2a_HOX2a                   <------NtERF2--------->ARR14(2)      -----    <---------LBD16<---------CCA1(2)  <---------MYB52(1) <---------ETT(2)         ----------->GT1   < --YAB1<------ZmHOX2a(1)      --------->ARR14(2)      <-----------RAV1(1)  <-----------GT1      <----   tttttatcaggaacctaatccggatcttagtcgatactctgtttgggctattcttactgtcgtcgtcgtcttcgaattcaccatcggtaaatttcatccc  6328600  Previous    Next  AGI:  At3g18430.1    Description:  calcium-binding EF hand family protein. similar to CAM9 (CALMODULIN 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G51920.1); similar to calcineurin-like protein [Eucalyptus grandis] (GB:AAL25647.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 6325921    to: 6327638    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18440.1    Description:  ATALMT9 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 9); anion channel/. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68043.1); contains InterPro domain Protein of unknown function UPF0005 (InterPro:IPR006214) Range:  from: 6328121    to: 6330800    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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