Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             =============================HOX2a_HOX2a                                                           ------>ZmHOX2a(2)                                                         <---------ARR11(3)                                                    ==============HOX2a_HOX2a    <------ZmHOX2a(1)                                                    <------ZmHOX2a(1)         <-----------RAV1(2)                                                 <-----------RAV1(2)     ------>NtERF2                                             <---------At4g35610       --------->RAP2.6(3)                                             --------->At4g35610    <---------HSFB2a(2)                                            <-----------RAV1(1)<---------At4g35610             <---------ARR11(3)             =================RAV    --------->HSFB2a(2)             --------->ARR11(3)         <---------GLK1(2)--------->ARR11(3)  <------NtERF2   --------   tctctaatagcttaagagcttcttcatcttctcccttctctagcttctgctgcaggagtgatctcagcgtctcgacggcctcaggagtggaatccaaaag  6325400                                                    <----------DOF2                                                 --------->ARR11(3)                                                 <---------ARR11(3)               ===================================HOX2a_HOX2a               ------>ZmHOX2a(2)                <------MYB46(1)             <---------ARR11(3)                <---------TOE2(2)                 <----------DOF2         <---------ANAC46                      <---------TOE1(2)      --------->LBD16         --------->ANAC55(2)                 --------------------->WRI1 --------->ARR14(2)         <---------ANAC58                   --------->TOE1(1)       <---------LBD16         ---------         <---------ANAC58                   --------->TOE2(1)     <---------ARR14(2)       ----------    <---------ICU4      <---------GLK1(2)  ------>ZmHOX2a(1)      --------->ARR14(2)    ----------->GT1 -->DOF2 <---------ANAC55(2)     <----------DOF2<------MYB83    ----------------------->TaNAC69(2)   ctcagataatggcgtgatctcagacagtttctcttctttcacttcctcgtaggtcttttcgatagtcgtaaccggagactcggctttaaccggtaaagtt  6325500                                                                     --------->LBD16                                                                    <---------HSFB2a(2)                                    --------->GLK1(2)               --------->HSFB2a(2)                                   <---------GLK1(2)                <---------HSFC1(1)                         <---------ALFIN1                           --------->HSFC1(1)                        --------->At4g35610                        <---------LBD16                        --------->ZAT2                         <----------DOF2          --------->WRKY18(1)    ----------->ARR10          <-----------GT1         <---------MYB52(1)     --------->YAB1             <-----------GT1         <-----------HVH21  --------->DEAR3(1)            <---------AHL20(2)   <----------DOF2   <---------At4g35610                --------->CCA1(2) >DAG2  --------->LBD16 <---------ABI4(2)              <---------ARR11(3)                    <------- >DOF2<---------LBD16--------->At4g35610               --------->ARR11(3)            --------->AGP1   gaaaactttccggtcattgaaacagcagcaccgatgagaatcgctgatttggcaaaagatttaaacttttctggaaaacaataaccagaactattctgat  6325600                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                           --------->LBD16                                                         <---------LBD16        ---------->DOF2                                                      ----------->HVH21       --------->ANAC58                                                      --------->WRKY12        --------->ANAC58                                   <---------ANAC46   --------->WRKY38(1)    <------NtERF2                                   <---------O2      <-----------HVH21      ------>NtERF2                                ----------->HVH21    <---------MYB52(1)    --------->DEAR3(1)      <---------AGP1          ------>ZmHOX2a(2)     <---------At4g35610    <---------DEAR3(1)     <---------ZAT2          <------ZmHOX2a(2)      --------->At4g35610  ------->GAMYB --------->ZAT2             --------->ARR11(3)      --------->LBD16    <---------At5g28300 <---------ZAT2             --------->ARR14(2)    <---------LBD16     <---------DOF5.7(2) <---------STY1(2)          <---------ARR11(3)    <-------TEIL        --------->MYB52(1)           >> --------->STY1(2)   ---------->DOF2            <---------SPL7     <---------DAG2             <------ --YAB1  ----------->HVH21  <---------ARR14(2)  <-----------HVH21  <----------DOF2        --------->MYB46(3)   tcgagctagctctgatacgaatagaaagaagatcgcgacggggaatcagaggtccggtgaccggagtcgctttaacggcgacgaaagaagaaaccaatga  6325700                     <---------ICU4               --------->ANAC58               --------->ANAC58    --------->ZAT2   --------->YAB1                                            --------->YAB1    --------->At4g35610                                                  --------->YAB1             -    <---------At4g35610                                                 <---------ATHB12       ------   --------->GLK1(2)<---------ATHB12                         --------->HSFB2a(2)        --------->ICU4 >>>>>>>TBF1 --------->CCA1(2) ------>ZmHOX2a(1)             <---------HSFB2a(2) ---------->DOF2   *TSS ---ATHB12  <----------ID1    --------->TOE2(3)        <---------TOE2(3)<<<<<<<<<ARR2 --------->CCA1(2)   agaagaagctgagagagacgaaatcatgtcttcctcagagcttcagagagagtatcaaaggttgcagaagcacaatcaaaatcaaaagagatgatgaaca  6325800                                             <---------ZAT14                             <-----------                                          <---------ANAC58                              <--------ATHB1                                          <---------ANAC58                              --------->ATHB51                                          <---------ANAC46                              --------->ATHB12                                      <---------ANAC46                                  -------->HAHB4                                      <---------ANAC58                                  <---------ICU4                                      <---------ANAC58                  <---------AHL20(2)  ---------         --------->ANAC46          <---------CCA1(2)          <------MYB46(1)          --------->AHL20(2)         --------->ANAC58        --------->ANAC46          <---------ANAC58            <---------AHL20(2)         --------->ANAC58      --------->ANAC58            <---------ANAC58            <---------ATHB51 --------->DOF2                --------->ANAC58----------->GT1<------MYB83         --------->AHL20(2) --->MYB46(3)               --------->ARR14(2) <---------ANAC46   <-----------TBP<----------DOF2 <---   aacaaagcactaagccatggcgatatatcagacacgcgtagcttgtgtgaagtatatttgggcttggtttttatattatgggcctttaaataattgggtc  6325900                              ------>NtERF2                              --------->LBD16                             <---------DEAR3(1)                            <---------LBD16                          ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                         --------->GLK1(1)                      --------->AGP1                         <------ZmHOX2a(2)                 --------->GLK1(2)                        <-----------ARR10           --------->ANAC55(1)                        <---------ARR14(3)          --------->ANAC46                        --------->ARR11(3)          <---------ANAC55(2)                        <---------ARR11(3)          --------->ANAC55(2)                        --------->ARR14(2)          --------->ANAC58                        <---------AGP1              --------->ANAC58                        <---------ARR14(2)         <-------TEIL--------->At4g35610                        --------->ARR14(3)         <---------LBD16<---------WRKY12 --------->AHL20(2)                       <---------CCA1(2)          --------->CCA1(2)              --------->ANAC58    <----------DOF2    <---------At4g35610        --------->ARR14(1)             ----------->GT1 ---------->ID1        --------->At4g35610       --------->ARR11(1)        ----------->HVH21--------- -CBF                *TSS<---------GLK1(1)       <---------ARR14(2)  --------->ANAC58   --------->YAB1 >MYB59           <---------TOE2(3)              --------->ARR14(2)  --------->ANAC58--------->WOX13(1) -------DOF2     ---------->DOF2               ----------->ARR10<-----------ARR10--------->ANAC58 <--   tttggccttttagttttcttaaggcagatctccggcgaaactttagactgagatacggaagaatcagatcaacgcatgcgaccaagtaaatcaaaatcgg  6326000                    <-----------HVH21       ---------->DOF2  --------->ANAC46    >>>>>>>>>TBF1  <----------DOF2         <-------TEIL                                         ----- >GLK1(2)     --------->CCA1(2)        --------->AHL20(2)   <---------GLK1(1)                  ------ ------P    --------->CCA1(2)      ----------->GT1 <---------AtMYB61 --------->YAB1         <--------   gttgaagaagaaagagataagctttcacatcagtaagttgataaattcatgttttggttttgaaatcagtatcatcttctctgaatcaactgtttatccg  6326100        --------->AHL20(2)        <---------AHL20(2)        <---------AHL20(1)     --------->TOE2(3)    --------->YAB1    <--------HAHB4    <---------ICU4    --------->ATHB12   <---------ATHB12                                                           --------->ANAC58   <---------YAB1                        <---------AHL20(2)                   <------NtERF2   --------->ICU4                       <---------AHL20(2)   <---------At4g35610 --------->WOX13(1)        --------->GLK1(1)   <---------ANAC58  <---------GLK1(2) --------->YAB1 --------->LBD16         --------->AHL20(2)<-------TEIL        --------->ANAC58 ---->LBD16     ------>ZmHOX2a(1)    <--------HAHB4   <---------YAB1         ------>NtERF2 --->ANAC55(2)----------->RAV1(2)    <---------ICU4   --------->ICU4        <---------ANAC46 ---GT1--------->AHL20(2)  <---------GLK1(1)   <---------ANAC58  --------->ARR11(3)              <---   tattaatcattaaatttcctgagttagggatttcatcgataattaaatgggttgtgatgattcatcagatttttgaaggcgcgaaatggggaatacttca  6326200              --------->ANAC58                           <---------GLK1(2)              --------->ANAC46                           --------->ARR11(3)              --------->ANAC58                  ------>ZmHOX2a(2)             --------->SPL7                   <---------ARR11(3)         <---------------AtSPL3               --------->ARR11(3)  <---------At4g35610                       --------->ICU4  --------->At4g35610                       <---------YAB1     <---------ETT(1)       <-----------GT1 ------------------WRI1                   --------->YAB1 <---------ARR11(3)      <----------DOF2   tcgatgctgactcagtacgacatcgaagaagttcagagtcattgtcatgatctatgtgagattttccgacaacttgtctctgtctttttttctatctgtt  6326300  Previous    Next  AGI:  At3g18420.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15432.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 6324639    to: 6325799    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18430.1    Description:  calcium-binding EF hand family protein. similar to CAM9 (CALMODULIN 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G51920.1); similar to calcineurin-like protein [Eucalyptus grandis] (GB:AAL25647.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 6325921    to: 6327638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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