Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC58                        --------->ANAC58               <-------TEIL               <---------TOE2(2)             <---------SPL7                                           <---------YAB1             --------->TOE2(2)                                      --------->MYB52(1)            --------->ANAC55(2)                           --------->AHL20(2)            <---------ANAC58                             --------->AHL20(1)            <---------ANAC58                    <---------YAB1--------->AHL20(2)            <---------ANAC55(2)               <---------AHL20(2)   --------->TOE1(2)           <---------------AtSPL8            --------->AHL20(2)<-----------GT1           --------------->AtSPL3     <---------MYB52(2) <---------AHL20(1)                    <----- -------AHL20(2)        ----------->GT1    --------->TOE2(3)  <---------AHL20(2)           <---------AHL20(2) ----->AHL20(2)--------->SPL7    --------->ANAC58        --------->ARR11(3)               <---------AHL20(2) ------AHL20(2)------->TEIL      --------->ANAC46        <---------ARR11(3)            <---------AHL20(2) >TOE2(3) <-----------GT1        --------->ANAC58   <---------ZAT6 --------->TOE2(2)   --------->AHL20(2)   taaatagtctttttacgtacgtagacaagaaaaacaagcaaataacatttattagtgaaaatatttaaacttacgatttgctaagacatttttttattta  6322800                                                  --------->YAB1                                       <---------AHL20(2)                                           -                                       --------->AHL20(1)                                          --                                      --------->YAB1          <---------ARR11(3)                  <--                                      --------->AHL20(2)      <-----------ARR10           <---------YAB1                                      <---------AHL20(2)      --------->ARR11(3)          -----------           <---------AHL20(2)        --------->ICU4          <---------CCA1(2)          --------->YAB1          --------->AHL20(2)    ----------->GT1   ------->GAMYB                       <---------ARR11(3)    <---------AHL20(2)     --------->ANAC55(2)    --------->TOE2(3)                   --------->ARR11(3)   --------->AHL20(2)   <---------AHL20(1)       --------->MYB46(3)              <---------YAB1 ----- ----AHL20(2)        --------->AHL20(2)<---------AHL20(1) ------->TEIL        <---------YAB1    <----   ttctattaaatataaaattcaaataatatatgtaatgtaattatattttcaaccaaaatgaacatatctcatctacagtttttataaatatcatgaaaaa  6322900                                               --------->AHL20(1)                                               <---------AHL20(1)                                     <---------STY1(2)                                     --------->STY1(2)    <----------DOF2              --------->STY1(2)                     <---------AHL20(2) ----->ZmHOX2a(1)                <---------STY1(2)                     --------->AHL20(2) ------->TOE2(3)             <---------STY1(2) --------->AHL20(2)     <---------AHL20(1) -------ICU4                 --------->At4g35610      ------->TEIL    --------->AHL20(2) >GT1                        <---------At4g35610<---------AHL20(2)    --------->YAB1 ---->ARR11(3)               --------->STY1(2) <---------AHL20(2)     <---------AHL20(2) -----ARR11(3)          <---------ZAT6        --------->YAB1    --------->YAB1                   ----   tccttacttttgtcaaaaatttgttagtgttagctagctagatagctaatataatgaactcgtccataacaataaaattagatgtctaaaattgtctgaa  6323000                                                                                            ---------                                                                               <---------MYB52(1)                                                                             --------->ANAC55(2)      --------->AHL20(2)                                      ----------->RAV1(1) <---------YAB1      --------->YAB1    --------->AHL20(2)         --------->YAB1            <---------ANAC55(2) ------->GT1        --------->ICU4      --------->YAB1  ---------->DOF2 <---------------AtSPL3   tgtaacaataaaactgtgagtaagaattaaaaaaaaactcaaaaatcactcactcataaaaaggccacagagtacgagtacgttatgctagatttaggcc  6323100                             --------->ATHB12                             -------->ATHB1                             <---------AHL20(2)                             <--------HAHB4                        ------------>CBF                    --------->PCF2                <---------ARR14(2)                --------->ARR14(2)           --------->LBD16   --------->ATHB51        <------ZmHOX2a(2)    <---------ICU4       --------->ARR11(3)    --------->AHL20(2)       --------->ARR14(2)   <---------ATHB51                                               >>>>>>>>>TBF1       --------->AGP1  ----------->RAV1(1)                             --------->YAB1  <---------ZAT14  --------->TOE2(3)<-----------TCP11(1)                             *TSS       <----------ID1    >>>> >MYB59<---------ARR14(2)   --------->ICU4      ---------->DOF2 <XXXXXXXXXXXXXXXXXXXXMIR780.2 >>>>>>>   catacattagatccagagaataggcccacaattatttgttaacatgaagagaaaggtcccctaactcagataatcacgaagacgacgagtgaagaagaag  6323200                                                        <----------DOF2                                                       <---------ANAC58                                                       <---------ANAC46                                                       <---------ANAC58                                                 <---------SPL7                                                 --------->LBD16                                               --------->RAP2.3(1)                                               <------NtERF2                                               --------->ATERF1(1)                                               <---------LBD16                                              <---------ERF1                                              <---------ATERF1(1)                                              <---------RRTF1(1)                                              ------>NtERF2                                              <---------RAP2.6(1)                                              <---------RAP2.3(1)                                             --------->DEAR3(1)                                <-----                                             <---------RAP2.3(2)                              <------                                             <---------DEAR3(1)                          <------NtERF2                                            --------->ATERF1(1)                         ------>NtERF2                                            <------NtERF2                              <---------DEAR3(1)                                            --------->RAP2.3(1)                        --------->ALFIN1                                           <---------DEAR3(2)                      <---------LBD16                                           <---------ORA47(2)             --------->AtLEC2   <-------                                           <---------DEAR4(2)        --------->GLK1(2)<---------MYB52(1)                                           <---------RAP2.3(1)      --------->GLK1(1)--------->LBD16                                          <---------DREB2C(2)   ----------->GT1    ------>ZmHOX2a(2)                                          <---------RAP2.3(2)  --------->HSFB2a(2)--------->ARR14(1)                                          <---------RAP2.3(3)  <---------HSFB2a(2)<------ZmHOX2a(2) --------->ANAC58              --------->GLK1(1)<---------ANAC46--------->LBD16  --------->GLK1(2) --------->ANAC58         <---------LBD16 <---------DEAR3(1)  <---------LBD16    --------->ARR14(2) >>>>>TBF1               --------->MYB52(1)<---------ATERF1(1)------>ZmHOX2a(2)  <---------ARR14(2) >>TBF1      ---------->DOF2--------->LBD16<---------ERF1 ----------->ARR10      --------->ARR11(3)   aagaagcaatggggagaaagaagggattaccggagttcgaagagtcggcgccggatggctttgatccggaaaatccatacaaggatccggtggcgatggt  6323300                                                          <---------ANAC58                                                          <---------ANAC58                                                          <---------ANAC55(1)                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                    <---------ARR11(3)                                                    --------->AGP1                                                    <---------ARR14(3)                                                    <---------ARR14(2)                                 ----------------->AGL1   --------->ANAC55(2)                                 ------>ZmHOX2a(2)  <---------AGP1                                 ----------------->AGL3   <---------ANAC46                                 ----------------->AGL2   <---------ANAC55(2)                    <---------HSFB2a(2) <---------HSFB2a(2)          <---------WRKY12         <---------ZAT14        <------ZmHOX2a(2)   --------->ARR14(2)          <---------At5g28300 -         <---------ZAT18       ------->TEIL         --------->ARR14(3)         <-----------GT1   ---- --GAMYB --------->ZAT18       <---------ARR14(2)   --------->ARR11(3)      <---------ZAT6  <------ZmHOX2a(1) ---MYB46(3)        --------->HSFB2a(2) --------->HSFB2a(2)       ----------->GT1     <------NtERF2<- --AtMYB61      <---------SPL7 --------->ARR14(2) ----------->ARR10<-----------HVH21 <-----------HVH21   tgaaatgagagagcacatcgttcgagagaaatggatccaaatcgagaaggctaagatcttgcgtgagaaggtcaaatggtgttaccgcgtcgaaggagtc  6323400                                                              <---------ANAC46                                                             <------MYB46(1)                                                             <------MYB83                                                            <---------MYB46(3)                                                            --------->ALFIN1                                                           <---------MYB52(1)                                                           <--------P                                                          <-------GAMYB                                                         <---------MYB46(3)                                                         --------->MYB55(2)                                                         <---------DEAR3(2)                                                        <---------At1g77200                                                        <---------DEAR3(1)                                                       <------NtERF2                                                       --------->ATERF1(1)                                                      ------>NtERF2                                                      ------------>AtMYB77                                                      <-----------HVH21                                                     --------->O2                                                     <---------O2                             --------->At4g35610     <---------ANAC46                <-----------TGA1                     <---------DEAR3(1)               --------->ETT(2)                      --------->DEAR3(1)               <---------ETT(2)                    <---------ATERF1(1)               --------->bZIP60(1)                <---------DEAR3(1)            ------>ZmHOX2a(1)               --------->TGA2(1)  --------->ARR14(2)--------->ATERF1(1)<------ZmHOX2a(2)      -------      --------->YAB1         <---------At4g35610 <---------LBD16      <---------ARR11(3)  <---------ALFIN1 -------->YAB1<-----------STF1    <---------ARR11(3)------>NtERF2     --------->ARR11(3) <---------REM1(2) ----->WOX13(1)<---------TGA2(1)  <---------ARR14(2)<------NtERF2    <------ZmHOX2a(1) --------->ANAC46 --------ATHB12<---------bZIP60(1)--------->ARR11(3)--------->RAP2.3(1)================HOX2a_HOX2a   aatcactatcagaaatgtcgtcatcttgttcagcagtatctcgattccactcgcggcgtcggttggggaaaggatcatcgtcctatttcgctccacggtg  6323500                                                                                             --------                                                                                            ---------                        ----------->GT1                                                  <-----------                        <---------ANAC58                                  <---------ANAC58<---------ANAC58                        <---------ANAC58                         <---------MYB46(3)     --------->ZAT18            --------->ATHB12                                 --------->ATHB12       <---------ICU4        <---------MYB46(3)  <---------YAB1             <------MYB46(1)    <---------ANAC58-----------    xxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------MYB52(1) <---------YAB1<---------ANAC46<---------ANAC46 -->At5g28300    --------->At4g35610    <----------DOF2<------MYB83     --------->ARR11(3)<---------ANAC58   agtttaatggtggatgatttgctgaagcgtattattcgattcctttggttttgtatttggttctcattggttaatgtcttggttaattagtgccttgatt  6323600     -------->ATHB1     --------->ATHB12     <---------ICU4    <---------YAB1                                                        <---------WOX13(1)   <---------ARR11(3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->ATHB12                                                     --------->ZAT18 >ICU4                                                        <---------ZAT18        ------->TEIL ------------TaNAC69(2)       <---------YAB1            <---------At4g35610   <---------YAB1 ---->AGL15          <------ZmHOX2a(1)             <----------DOF2      --------->ATHB12   agcaaaatcattgaattcatataggactgatattgatagagattagtctgaggctttgagctagtgcatttgtttgattgatgaatgaaactctcatgtt  6323700  Previous    Next  AGI:  At3g18410.1    Description:  NADH-ubiquinone oxidoreductase-related. Identical to NADH dehydrogenase [ubiquinone] iron-sulfur protein 6 [Arabidopsis Thaliana] (GB:Q9M9B4); similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT1G49140.1); similar to unknown [Populus trichocarpa] (GB:ABK93904.1) Range:  from: 6323168    to: 6324585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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