Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                -----                                                                                               ------                                                                                    --------->At4g35610           --------->YAB1                                                           <---------ZAT2  -          <---------ATHB12                                                     --------->HSFB2a(2)  - ----->ZmHOX2a(2)                                                              <---------HSFB2a(2)--- -----ZmHOX2a(2)                                                              <---------LBD16 <------ ------>ARR14(2)                                                           <---------ZAT2     <------ -------AGP1                               <----------ID1                  --------->ZAT2  --------->ARR14(2) -------ARR14(2)                           <------ZmHOX2a(1)               --------->At4g35610<------ -------ARR11(3)               <---------MYB59       ----------->RAV1(1)   <---------At4g35610<------ ------>ARR11(3)             <---------ARR11(3)    --------->DEAR3(2)  <-----------GT1     --------->GLK1(2) ---------ARR10       ---------->DOF2  ------>ZmHOX2a(1)           --------->ARR11(3)      <---------ARR14(2) ---ZmHOX2a(1)  ------->TEIL --------->ARR11(3)  --------->MYB52(1)<---------GLK1(2)<---------At4g35610   gatctaaaccctatcatgaacccaaaaagaagacctaaatcctaaggaacaaaaccgacacaaaaatcagatttttcagctctgggagctcaaaatccgt  6313100                                                           --------->ANAC58                                                           --------->RAP2.6(2)                                                           --------->ANAC58     <---------ALFIN1                                      --------->DREB2C(2)   ----------->RAV1(1)                                    --------->DEAR3(2) -------->ANAC58                                          --------->MYB46(3) ------>HVH21                                            --------->SPL7 --->LBD16                                             <---------SPL7                  --------->ARR11(3) -------->ANAC46                                       ----------->HVH21               <---------ARR11(3) -------->ANAC58                                       --------->LBD16                 <---------ARR14(2) ------->DOF2                                         --------->DEAR3(1)    --------->ETT(2) ---ANAC58                             <------ZmHOX2a(1)<---------PCF5      <---------ETT(2) ---ANAC46                      <-----------RAV1(2)--------->ANAC58      <------MYB83  --------->ARR14(2) ---ANAC58                    --------->TOE2(3)    --------->ANAC58      <------MYB46(1) ---ANAC55(2)     --------->GLK1(2)   ----------->GT1<---------LBD16    <---------AtMYB61          --   gaaagcaacacattacaaagaatcgagataaacctcaggcaggataaatcgaaacgccggaccgccattactgggaggtcgacccatggtatcttcttcg  6313200                               --------->DAG2                              ---------->DOF2                          <---------At4g35610                          --------->At4g35610                                                       -                          <------NtERF2                                                             -                         ----------->RAV1(1)                                                        -                         <---------RAP2.3(1)                                                       <-                         ------>NtERF2   --------->WOX13(1)                                       <--                        <---------RAP2.6(2)                                                       <--                        <---------RAP2.3(2)     <---------HSFC1(2)                                ---                        <---------ATERF1(2)     <---------At4g35610                    <-------------                        --------->ATERF1(2)     <---------ZAT2                   ------->TEIL     <--                        <---------DEAR3(1)      --------->HSFC1(2)        <---------At5g28300    <---                        <---------RAP2.3(3)     --------->HSFB2a(1)       <---------LBD16    <-------                       <---------LBD16 <---------ATHB12   --------->ANAC55(2)--------->At5g28300 <---   --------->DEAR3(1)  --------->RAP2.6(3)      <---------HSFB2a(1)      --------->MYB52(1) --------- --------->HVH21  --------->DAG2----------->GT1<-----------ARR10      --------->ARR14(2)    ---------   tctcaccgaagaaaaaacaaaaattggcggcagaaagtgaaatcaatcggagcttctctcacttaatattcgaattcacggtgaatctctctagtacggc  6313300         ------->GAMYB        --------->MYB46(3)      --------->MYB52(1)      ------>MYB46(1)    --------->MYB46(3)    <---------MYB55(2) -------->WRKY12 -------->WRKY38(1) ---------->HVH21 ----------HVH21 -------At4g35610 -------ATERF1(1)                                                         <---------AHL20(2) ------>At4g35610                                                         --------->AHL20(2) -----SPL14   --------->ANAC46                           <---------DAG2  --------->AHL20(2) -------DEAR3(2) --------->ARR14(2)              <-----------TBP         <---------AHL20(1) ------DEAR3(1)  <---------ARR14(2)            <---------ANAC46<---------At4g35610 --RAP2.6(2)  --------->ANAC58              <---------MYB52(1) ----------->RAV1(2)--------->TOE2(3) ------MYB46(3)------->GAMYB               <-----------HVH21 <-----------GT1      --------->TOE1(3) >SPL7------>MYB83       *TSS        <---------ATERF1(1) <----------DOF2 <---------AHL20(2) >RAP2.6(3)   --------->ANAC58      ----------->HVH21 <-----------GT1   --------->ICU4        -------   cggtgacccaacgacaacgaaaccggttttactcagacccgactccgtcgcttatataacttttcacctgtgtaatttttttaaacttaacatgtagtaa  6313400                                                                                      ----------->HVH21                                                                                    ----------->RAV1(2)                                                                                   ------>NtERF2                                                                                   --------->LBD16                                                           <---------AtMYB61   --------->ARR14(2)                                               <-----------ARR10               <---------ARR14(2)                                               --------->ARR11(3)     <---------ARR14(2)                                               <---------ARR11(3)<XXXXXXXXXXXXXXXXXXXXMIR862-3P                                 ---------->DOF2          --------->SPL7   <---------At4g35610  <----------DOF2             --------->TOE2(3)--------->GLK1(2) ----------->GT1  --------->ANAC46 -->ICU4        ---------->DOF2------>ZmHOX2a(1)         <---------MYB52(1)<---------ZAT2  *TSS   tgggcttttaaaacccattaaaggcccattttcctaaaaccgatacaaaaatcttatccgtatggtcgagtaaatccagcttatccgcctgaaacttatt  6313500                                                                                    <xxxxxxxxxxxxxxxx                                                                               <----------DOF2      -                                 <---------At4g35610                    <<<<<<<<<WRKY18            --                               --------->ZAT14                       <---------ANAC46  <---------ALFIN1                               <---------ZAT14                       --------->bZIP60(1)           --                  <---------ANAC46                     --------->AHL20(2)     <---------ANAC58     <-               <---------DEAR3(1)--------->At4g35610   <---------AHL20(2)     <---------ANAC58    <--    --------->ARR14(2)       --------->O2<----------DOF2             <---------bZIP60(1)         <---    <---------ARR14(2)      <---------HSFC1(2)        --------->AHL20(2)<---------WRKY12 --------->ANAC46   tctcagtatccaaaacgatggcgaagaagacacttcgctgaagcttttttttccaaaaaaatttcttagtgtcgtcaatggctttggctccacttaattt  6313600   <---------GLK1(1)   --------->GLK1(1)   ---------->DOF2                                                                         <------MYB46(1)  <---------ARR14(2)         ----------->HVH21                                             <---------ANAC58  --------->ARR14(2)         --------->WRKY12                        --------->ANAC55(2)   <---------ANAC58 xxxxsmallRNA(si3)         <---------At4g35610                       --------->ANAC46      <------MYB83 -------->LBD16            ------>ZmHOX2a(1)                         --------->ANAC58      <---------ANAC46 ------->ANAC46            ----------->RAV1(2)                       --------->ANAC58     --------->MYB55(2) ------->ANAC55(2)         --------->At4g35610                    <---------REM1(2)       <---------MYB46(3) --------ANAC55(2)--------->ARR11(3)                             <-----------HVH21       <---------MYB55(1) -------LBD16     <---------ARR11(3)                        ------>ZmHOX2a(1)           <---------MYB52(1) --------GT1     --------->At4g35610                   ------>ZmHOX2a(1)              <---------MYB46(3)   tacggaaatgccactgagaagctctcttcctctgacctctagctctcgctattgttcctctccttcgcttcacgcattgctcttctattcgttgggtgtg  6313700                                                   <---------ANAC58                                             --------->ANAC46                                             --------->ANAC58                                             --------->ANAC58             --------->MYB46(3)       --                                           ---------->DOF2       <------ZmHOX2a(1)                ---                                       <---------ANAC58          ===============================HOX2a_HOX2a                                       <---------ANAC58       <-----------RAV1(2)                 <--                                       <---------ANAC46     ----------->RAV1(1)                   <--                                   <---------At4g35610   ----------->RAV1(1)                 --------                                   --------->At4g35610   =================RAV            ============                                 <---------------------WRI1--------->MYB46(3)   <--------------------                       ------>NtERF2  ------>NtERF2<---------ANAC58     --------->YAB1   <------ZmHOX2a(2)   aaaccctcgcgtcaacaaattgttcggccattctcttcgctgcgtacaagcgagcgtagcaacaacaggagcaataacaatcgtcgattagatcaacgta  6313800                                                         <------NtERF2                                                       <---------DEAR3(1)                                                       <---------DREB2C(2)                                                    ----------->HVH21                                                  --------->ZAT2                                                  <---------At4g35610                                                  <---------ZAT2                                               --------->LBD16      ------>NtERF2                                            ------>ZmHOX2a(1) <---------ICU4                                      <---------MYB52(1) --------->At5g28300    <---------MYB46(3)        ------>MYB83                 <-----------HVH21 <---------ANAC46         ----------->GT1        ------>MYB46(1)              <-----------TGA1 <------NtERF2<---------ANAC46        -------->P                  --------->ANAC46--------->ALFIN1--------->LBD16 ------->YAB1                     <---------ATERF1(1) <---------ABI4(1)     --------->DAG2      <---- ------>ICU4                    --------->ATERF1(1)--------->ATERF1(1)    ---------->DOF2     <------ -------ATHB12                  <---------ANAC58 <---------ARR14(2)<---------LBD16            <------ -------YAB1                    <---------ANAC58 --------->ARR14(2)--------->LBD16           <------- ->ANAC46    ------>ZmHOX2a(1)--------->ZAT18 --------->HSFB2a(2) <---------LBD16           ------->GAMYB ===================HOX2a_HOX2a<---------ATERF1(1)--------->At4g35610<------NtERF2       --------->MYB52(1) -WRI1<---------MYB59         <---------ZAT18<---------LBD16--------->ARR11(3) --------->ALFIN1------   atcataaacctactcctccttggatagataagtggcctccgtcatcctccggagctggcggtgatcatgccgggaagaaaggtggtgaaaacaacggcgg  6313900                         <---------At4g35610                   <------ZmHOX2a(1)                                                             ----                 --------->ALFIN1   --------->HSFC1(2)                                           ----       --------->MYB59   --------->At4g35610                         --------->ANAC46            ----    <---------ARR14(2)<------ZmHOX2a(1)   <---------MYB52(1)       ---------->DOF2               <--- --NtERF2      --------->LBD16      <---------HSFB2a(1)       <------ZmHOX2a(1)                  ---- ---ANAC46   <---------LBD16        --------->HSFB2a(1)      <----------ID1                     <---- ---DEAR3(1) <---------At4g35610    <---------HSFC1(2)     --------->DAG2           --------->KAN4(1) --LBD16     --------->At4g35610   <---------ARR14(2)     ---------->DOF2           <---------KAN4(1) --->LBD16 <---------DEAR3(1)      --------->ARR14(2)  <------ZmHOX2a(1)         <------ZmHOX2a(1)   agatagaattcggtctgcggaggaggaagcggaagcgaaacttcggtatttggagaaggataaaggacaaaacgcgattgagaggattgttcttcggcta  6314000  Previous    Next  AGI:  At3g18380.1    Description:  sequence-specific DNA binding / transcription factor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15215.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37623.1); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 6310742    to: 6313325    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18390.1    Description:  EMB1865 (EMBRYO DEFECTIVE 1865). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to hypothetical protein OsI_020171 [Oryza sativa (indica cultivar-group)] (GB:EAY98938.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72582.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68068.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 6313491    to: 6317977    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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