Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->At4g35610                                                                --------->ABI4(1)                                                                ------>NtERF2                                                                <------NtERF2                                                               --------->DEAR3(1)                                                               --------->RAP2.3(2)                                                               --------->RRTF1(2)                                                              <------NtERF2                                                              --------->RAP2.6(1)                                                              --------->RRTF1(1)                                                              --------->RAP2.3(1)                                                              --------->ATERF1(1)                                                             <---------ATERF1(1)                                                            <---------DEAR3(1)                                                            --------->DEAR3(1)                                                            <---------ATERF1(2)                                                            --------->ANAC46                                                            --------->RRTF1(3)                                                            --------->RRTF1(2)                                                            --------->RAP2.3(3)                                                            --------->RAP2.6(2)                                                            --------->RAP2.3(2)                                                            --------->ATERF1(2)                                                           --------->ERF1                                                           --------->ORA47(2)                                                           --------->DEAR4(2)                               --------->LBD16             --------->RRTF1(1)                         ------>NtERF2                     --------->ATERF1(1)                         --------->LBD16                   --------->RAP2.6(1)                        --------->ANAC46                   --------->RAP2.3(1)                        --------->HSFB2a(2)               <---------ATERF1(1)                     <--                        <---------ATERF1(2)               ------>NtERF2                           <--                     --------->ARR14(2)                   --------->ABI4(1)                       <--                  <---------ANAC58                       --------->ANAC46                         <--                 ----------------->AGL1                  --------->DEAR3(1)                      <---                 ----------------->AG                  <---------At5g28300   <--------P          <---                 <-----------------AGL2               <-----------GT1        <---------MYB52(1) <----                 <-----------------AGL1              <---------YAB1        <---------MYB46(3)   <----        --------->ARR11(3)   <------NtERF2         <--------HAHB4         <---------ANAC58     <-----        <-----------GT1<---------LBD16             --------->YAB1         <---------RAP2.6(2) <------        <---------ARR14(2)   --------->At4g35610   --------->ATHB51       <---------ANAC58    <------        <---------ARR11(3)   <---------At4g35610   <---------ICU4         <---------ANAC46   <-------        --------->ARR14(2)  ------>NtERF2          -------->HAHB4        <---------LBD16    <--------       --------->RVE1(1)<---------ETT(1)           -------->ATHB1<------NtERF2            --------->ETT(2)       --------->CCA1(1)<---------HSFB2a(2)       <---------YAB1<---------At4g35610     <-----------HVH21 <---------AHL20(2)  <---------ARR14(2)           <---------ATHB51 <------NtERF2       <-----------RAV1(1) --------->AHL20(2) <---------MYB52(1)            --------->ICU4--------->LBD16     <-----------GT1 -------->AHL20(2)<---------ANAC58           ----------->GT1<---------ALFIN1<-------GAMYB <---------ETT(2) --------YAB1 <----------DOF2<---------LBD16<---------TOE2(3)--------->ABI4(1)<---------MYB46(3)<---- ---->GT1    <---------DAG2<---------ALFIN1 <---------TOE1(3)------>NtERF2<---------TOE2(3)----------   tattaaaaaatatcccctttccgtttccggcaccggagtagtttctaaggtaattattaccgccgccgcagcgattgcggttgttttttctgtcgacggt  6301300                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                                  <---------ARR11(3)         --------->HSFC1(2)                                       --------->ARR11(3)         <---------DEAR3(2)                                       <---------ARR14(3)         <---------HSFB2a(1)             ------>ZmHOX2a(2)       --------->GLK1(1) ----MYB83<---------SPL7               <---------ARR14(2)       ----------->ARR10 -------DEAR3(2)                    --------->LBD16         ------>NtERF2 ----MYB46(1)                      <---------LBD16         --------->DEAR3(1) -------MYB46(3)                ------>MYB46(1)            --------->DREB2C(2) ------AtMYB61                  ------>MYB83 --------->ATHB12 --------->DEAR3(1)           <---------MYB52(1) ------MYB46(3)     <---------WOX13(1) --------->ARR14(2)  ------->GAMYB                <---------LBD16 -----MYB52(1)  <---------MYB52(1) --------->LBD16        --------->MYB46(3)      <-----------HVH21 ----P------------>AtMYB77      -------->P  --------->WRKY18(1)------>NtERF2      <---------PCF2 --GAMYB <---------HSFC1(2)     --------->ANAC46        <---------ALFIN1         <------MYB83 ---DEAR3(2)   <-------GAMYB  --------->AtMYB61         --------->AtMYB61        <------MYB46(1) ---MYB46(3)  <------MYB83 <-----------GT1 <-----------HVH21--------->ABI4(1)  --------->ALFIN1 --DEAR3(1)  --------->MYB59<---------At5g28300        --------->MYB46(3)   <------NtERF2 --------->LBD16 -------------WRI1--------->ATHB12<---------LBD16 <---------ANAC58--------->ARR14(3) --------->KAN4(2) -----MYB55(1)<------MYB46(1) <---------ALFIN1    <---------ANAC55(2)     <---------DEAR3(1) -->AtMYB77<---------MYB52(1)--------->MYB46(3)   <---------ANAC58--------->AGP1<---------MYB46(3)   tggttcagagacggttcggttgattgattttaccaccccgggatcggtcattgcgttaccaccgccgagatcttcgtcggagtgggtcattccggtgagt  6301400                                                                                       <---------LBD16                                                                           <---------bZIP60(2)                                                                           <---------O2--------->LBD16                                                                           --------->O2------>NtERF2                                                              <---------ICU4    <---------ANAC58                                                   <---------ANAC58        <---------TGA1a   <------ZmHOX2a(1)                                                   <---------ANAC58        ==========================                                                 --------->ALFIN1       ----------->HVH21 <------NtERF2                               <---------ANAC46<---------ANAC58         ----------->TGA1 --------->LBD16                         <------ZmHOX2a(1)     <---------ANAC46        <-----------HVH21<------NtERF2                    <----------DOF2            <---------ANAC58      --------->LBD16   --------->At4g35610                 <---------ARR11(3)     <---------YAB1        --------->YAB1    <---------ANAC58-----                 --------->ARR11(3)  <---------YAB1--------->ALFIN1<---------LBD16    --------->DEAR3(1)   ttttgaacaagagccatgaaatctttaggattagtgtgtatgattcttggagtgtgtgtgtaaatgatcaccgggtgacgaggcttagccgcggaggaga  6301500                                                                <---------ANAC46                                                                <---------DEAR3(1)                                                             ----------->HVH21                                                             ----------->TGA1                                                            --------->ATERF1(1)                                                            <------NtERF2                           --------->ANAC55(2)              --------->At5g28300                           <---------ANAC58                <---------MYB46(3)                           <---------ANAC58                <XXXXXXXXXXXXXXXXXXXXMIR414                           <---------ANAC46               <---------DEAR3(1)                           <---------ANAC55(2)            <---------ANAC46                      --------->YAB1                      <---------DREB2C(2)                     <---------AHL20(2)                  <------NtERF2                    --------->AHL20(2)             <---------TOE2(3)                          -------              <---------MYB46(3)                   <---------TOE1(3)                        <--------          <---------DEAR3(1)--------->TOE1(2)     ---------->DOF2 --------->At5g28300     --------->GLK1(2) ======bZIP_DOF     <---------AHL20(2)        <----------DOF2--------->ALFIN1  <---------ANAC46 ----->DOF2  <---------AtMYB61       <----------DOF2   <---------DEAR3(1)--------->ALFIN1<---------GLK1(2)   aagaagacggagacggtggttttttaataacgtgagagtctttgttgacttttaaagttggcggtgacggtgaaggtgagggagtgtataagattccgga  6301600                                                         --------->ANAC58                                                         --------->ANAC58                                                        --------->SPL7                                                     <---------MYB46(3)                                                    <---------AtMYB61                                                    <---------------AtSPL3                                                  <---------MYB46(3)                                                 <---------DEAR3(1)                                                 <---------AtMYB61                                               <---------MYB46(3)                                               <------MYB46(1)<------MYB83                                               <------MYB83   <------MYB46(1)                                              <---------AtMYB61<-------GAMYB                                <XXXXXXXXXXXXXXXXXXXXMIR414  <---------AtMYB61                               <---------AtMYB61 --------->ALFIN1                --------->At4g35610     --------->ATHB12  <---------AtLEC2       --------->MYB111(2)         ------->TEIL    <---------YAB1 <----------DOF2   <---------AtMYB61<---------SPL7  ------>ZmHOX2a(1)            -- -->LBD16 <---------ANAC58<------MYB46(1)     --------->ALFIN1<---------MYB46(3) <---------At4g35610 -LBD16   <---------ANAC58<------MYB83        <---------DEAR3(1)     --------------------->WRI1    --   gttgttttcattgggttctctctttggatggtgatggtgatggtgagggtggtggtggtacggatggttgtccttgtacgttgagctcatttcatgtgta  6301700                 <---------ANAC46                 <---------ANAC58                 <---------bZIP60(2)              ----------->HVH21              --------->YAB1          <------------CBF   <---------AHL20(2)                             <------------CBF     --------->DAG2         --------->AHL20(2)                             --------->ATHB12    ---------->DOF2         <---------AHL20(2)                  --------->DAG2    ----------->GT1 ------->AHL20(2)<---------ANAC58          ------->TEIL        ---------->DOF2  ---------->DOF2 ------->YAB1 ----------->TGA1      --------->AHL20(2) --------->YAB1     <---------YAB1   ataaaaaaaagggattgtgacgtttttgaattaaatgaataaatgaatcatacataagtataaccaaaagtaagttttcattgaaagtaaaacagaatga  6301800                                                                            ------->PIF5                                                                            <-------PIF5                                                                            <-------MYC4                                                                            ------->MYC4                                                                            ------->MYC3                                                                            <-------MYC2                                                                            <-------MYC3                                                                            ------->MYC2                                            <-----------TBP                <---------TGA1a                                    --------->ALFIN1                       <---------ANAC46                                    <-----------RAV1(1)                    <---------O2                    <---------ARR14(2)     ==========================================bZIP_DOF         <-------TEIL               <---------ZAT6                         --------->O2        ===========================HOX2a_HOX2a                             <--------ABF1        ================================HOX2a_HOX2a                        <---------ANAC55(2)    ---        <------ZmHOX2a(2)         <---------ANAC46                       <---------ALFIN1<---------ANAC58       <---------ARR11(3)        <------ZmHOX2a(1)                     ----------------->PIF3(1)  ---       --------->ARR11(3)   <------ZmHOX2a(1) --------->YAB1    <---------At5g28300      <---------ANAC58       --------->AGP1--------->CCA1(2)     <----------DOF2   <-------GAMYB --------->TGA1a <---------ZAT6 <------------CBF   --------->ARR14(2)    <---------DAG2     ========================MYC_MYB      ---   caaaattgagatccattttgaagatagggaggagaggagtgttgccttttataagcttcagtctgttacagtgagccacgtgtaatctggtgagtgttcc  6301900                   <---------O2 <---------ANAC55(2)                   --------->ANAC55(2)                   <---------TGA1a                   --------->TGA1a                   --------->ANAC55(1)                   <---------ANAC55(2)          <---------YAB1    --------->ARR11(3)       --------->ICU4>>>>>>>>>NAP  --------->ANAC58 --------->O2 ----------->GT1  --------->ANAC58 --------->bZIP60(2) ------>ANAC58     --------->ANAC58                                                <------ZmHOX2a(1) ------>ANAC58     --------->ANAC58                                               <---------YAB1 ---- ------>ANAC46     --------->ANAC46                                  <---------GLK1(2)----------->GT1   aagtaagcacttattagtgccacgtaagtatatcatgtgaattagtttatgaggctgataagcagttaagagattatcgccactaggattgctaaaatcc  6302000                           <---------ANAC58                     <---------ICU4                    <---------ATHB12    <---------TOE2(3)                 >>>>>>>>>GT-1        -------->HAHB4              ----------->GT1         <---------ICU4          <---------HSFB2a(2)        <---------YAB1          --------->HSFC1(1)         --------->ICU4                  <-----------GT1          <---------HSFC1(1)         <---------ATHB51      <-----------GT1             <---------CCA1(2)          --------->HSFB2a(2)     --------->ICU4        <---------ICU4            ----------->GT1 ----->LBD16 <---------ZAT6<---------ANAC58<---------GLK1(2)  --------------->AGL15 <---------MYB52(1)   aggtttaaacttctagaggtaaatcatttccttgagataattatggattatcacatactaatttccattttttgctgtttagttctgttatatctgtaac  6302100                                                                                     --------->AtMYB61                                                                                 --------->MYB46(3)                                                                                --------->SPL7                                                                              <---------SPL7                                                                            --------------->AtSPL8                                                                            --------------->AtSPL3                                                                        --------->AHL20(2)                                                                        XXXXXXXXXXXXXXXXXXXX>MIR170                                                                       <---------ATHB12                  *TSS                                               --------->WOX13(1) <---------ICU4          <---------ICU4                               --------->HSFB2a(2)<-----------GT1    <---------HSFB2a(2)                                <---------HSFB2a(2)XXXXXXXXXXXXXXXXXXXX>MIR171B/C   tgtaatcgcgaagaattacatggattttgccgattgaaacatttgaatcgcagtaatctagaagtctgaaccaattaaaccgtaccaccatcaatacatt  6302200  Previous    Next  AGI:  At3g18360.1    Description:  VQ motif-containing protein. similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT1G68450.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73469.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 6300833    to: 6301690    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18362.1    Description:  other RNA Range:  from: 6302118    to: 6303930    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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