Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>ZmHOX2a(2)                                                           <---------At4g35610                                                           --------->GLK1(1)                                                           <---------GLK1(1)                                                           <------ZmHOX2a(2)                                                          <---------ARR14(2)                                                          <---------AGP1                                                          <---------ARR11(3)                                                          --------->ARR14(2)                                                        xxxxxxxxxxxxxxxx>smallRNA(i)            <----                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxx                                                      <---------LBD16                          <-----                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              ------                                              --------->LBD16                                 xxxxxxx                                             <---------ANAC58                               <xxxxxxxx                                             <---------ANAC46       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <---------AHL20(2)<---------ARR14(1)            <----------ID1                                       --------->AHL20(2)<---------CCA1(2) <-----------GT1 ----------                                      --------->AHL20(2)--------->LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxx                --------->YAB1  <---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxx             --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ------>ZmHOX2a(1)     <---------ICU4   <-----------------------TaNAC69(2) --------->ZAT18xxxxxxx   aaacatcctcttctactataatgccttaagtatggcttcatttaattgcgtagaacgccggatctgctaataggttttaagcgctcaaaactacaaagat  6296500     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ZAT14 --ZmHOX2a(2)                            <---------ZAT18 xxxxxxxxxxx>smallRNA(i)                <xxxxxxxxxxxxxxxxsmallRNA(i)                   --------->ANAC55(2) ----ARR11(3)                           <---------MYB52(1)                          <---------ARR14(2) --->ARR11(3)            <---------ARR14(2)                                       <---------ICU4 xxxxxxxxx>smallRNA(i)   --------->ARR14(2)                                     <---------TOE2(3) xxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16                                 <xxxxxxxxxxxxxxxxxxxxx >DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <---------AHL20(2) xxxxx>smallRNA(si3)     <---------GLK1(2)                             --------->ZAT6  <---------ANAC55(2) xx>smallRNA(i2)   --------->ANAC46 <---------ZAT14                  ----------->RAV1(1) xxxxxxxxxxxxxx>smallRNA(fl3)<---------LBD16            --------->ETT(2)      --------->AHL20(2)   cagtccgaaggcataaactatacacaagattcccagagttcagttcgctaaaacttggtcgatagagaaaacaacactaattaatgaatacggactaatt  6296600                  <---------WOX13(1)                --------->ATHB12               <---------YAB1               --------->ICU4             <---------ICU4             --------->YAB1                                                                  <-------            <---------YAB1                                                               --------->ANAC58            --------->ICU4                                      <---------MYB46(3)       --------->ANAC58          --------->YAB1                                     <-----------RAV1(1)   xxxxxxxxxxxxxxxxxx          <---------ICU4                                     --------->ICU4       <---------At4g35610         --------->ICU4                                 --------->YAB1            ----------->RAV1(2) xxsmallRNA(si3)<---------ICU4   --------->AHL20(2)<----------DOF2              <---------ALFIN1  <--   tgaaacatggaatcatcatgattgataccaaaaaaaaaaatcaacttgatgtgttttatcgtaatgttgttggaagaaaatcacacctgataagcacagg  6296700                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                       <---------ZAT6                                           <----                                   --------->REM1(2)                                            <----                                  --------->ALFIN1                                              <----                                 ------->MYC3                                                   -----                                 <-------MYC2                                                   <----                                 <-------MYC3                                                  ------                                 ------->MYC2                                                 <------                                 ------->MYC4                                                --------                                 <-------MYC4                                                --------                                --------->TGA1a                                            ----------                                <---------TGA1a                                            <---------At4g35610                                --------->ANAC55(2)                                        --------->At4g35610                <---------YAB1  <---------O2                                               --------->ZAT2              <--------HAHB4    <---------ANAC55(2)                                 ---------->DOF2              <---------ICU4    <--------ABF1                                       =================             <---------YAB1     --------->O2                                       <---------WRKY12           --------->YAB1  --------->ANAC58               ----------->GT1        <-----------HVH21    <---------LBD16        --------->ANAC46      <---------AHL20(2)            --------->DEAR3(2) ----RAV1(2) --------->ICU4--------->ANAC58 <---------TOE2(3)                  --------->MYB46(3) --- xx>smallRNA(si3)<---------ICU4 <---------ANAC46--------->AHL20(2)            ------->TEIL ---------- -----TEIL<-------TEIL ------>ZmHOX2a(1)  --------->CCA1(2)          ------>ZmHOX2a(2)     <---------ZAT2   tacttatctggattcattattattcctacaagacacgtgtagagataagattaaatgagatggtcatttgatctaatctgaaccgtcaaagtctgctgac  6296800 -----TGA1a -----O2 -----bZIP60(2) ---->TGA1a ---->O2 -----ANAC46 -----ANAC55(2) -----ANAC58                                                             --------->ANAC46 -----ANAC55(1)                                                       --------->ARR14(2) ---->ANAC55(2)                                                       <---------ARR14(2) -----ANAC58                                                         --------->GLK1(1) ----->STF1                                                          <---------GLK1(1) ---TGA2(2)                                                     <---------At5g28300 --->TGA1        <---------ANAC58--------->TOE1(2)         <---------RVE1(1) --->HVH21<-------MYC3     --------->ANAC46               <---------ARR11(3) ->RAV1(2)------->MYC3   --------->MYB52(1)               --------->ARR11(3)                    <---- =====bZIP_DOF   <---------ANAC58--------->TOE2(2)        <---------GLK1(2)              ------>ZmHOX2a(1) -------->GT1  <---------At5g28300                       <---------RVE1(1)<-----------HVH21   <------ ->bZIP910(2) <-----------GT1   --------->MYB46(3)      *TSS   <-----------GT1        ------>ZmHOX2a(1)   gtgttaaaaacacgttttaccgtgtcttaacgaaaccagcgaagccgagaacgaatcagagatttttaccgatatccgtcgctctctcctcctccgtcgt  6296900                        <----------DOF2                 <---------YAB1                  <-----------HVH21                  <---------ARR14(2)               <---------ANAC58                      --------->GLK1(2)               <---------ANAC55(2)                   --------->ARR14(2)               <---------ANAC55(1)                  <---------ARR14(2)                      <------ZmHOX2a(1)               --------->ANAC55(2)                  <---------GLK1(2)                       ========= --NtERF2      <---------ANAC46               --------->ANAC58       <------ZmHOX2a(1) --------->HSFB2a(2) ---DEAR3(1)   <---------ANAC58               --------->ANAC58   ---------->DOF2       <---------HSFB2a(2)   cgtgcttcgcttctcttgcgtgtcatctttttcgacaaacccaaaatcaaggcagaatctgataatcgaaaggacccagtagaaaacttcgcgaggaatc  6297000                                                                                               <-----                                                                                             --------                                                                                             <-------                                                                                        <---------ANAC46                                                                                        <---------bZIP60(2)                              <---------HSFB2a(2)                                      <---------TOE2(3)                              --------->HSFB2a(2)                                --------->ZAT14                     ------>ZmHOX2a(2)                                           <---------ZAT14 ===========================HOX2a_HOX2a                                   ---------->DOF2 --------->ALFIN1   aagggttagaagccctaacttgatcgctaattcgagaatgaagcatttggattgagggcaaaaatcgacgtttttaaaaagtctgaactgaggtggattc  6297100       --------->At4g35610       <---------At4g35610    <------ZmHOX2a(2)                                                                 <---------At4g35610   <---------ARR11(3)                                                                 --------->At4g35610   --------->ARR11(3)                                                                 <---------ZAT2 --TEIL----------->RAV1(2)                                                        <-----------HVH21 ->ARR14(2)                                <---------At4g35610                 <----------DOF2 --ARR14(2)             <---------ANAC46  <---------TOE2(3)                    --------------------->WRI1   gttgagatcatctgatcaaatgctcttcgtggaagtaaacatttgaggtgatttggagttattgttttggaatgttttcgactttgtcagcttctacgat  6297200                                                                                   ---------->DOF2                     <---------WOX13(1)                                         --------->WOX13(1)                   --------->ATHB12                                       <---------WOX13(1)                <---------At4g35610                                       <--------P               <---------AtMYB61                                         <-------GAMYB            --------->ALFIN1                                            <---------MYB46(3)          <---------ANAC46                                           <-----------RAV1(1)         ----         <---------TOE2(3)                                        <----------DOF2 <---------ATHB12     --------->CCA1(2) --------->ATHB12                <---------LBD16 <---------TOE2(3)        <----   gctctagatttgaggtggaggtgattgattagtagtctctgtgttttgttcaaagttttcggattagacttttgtggttgatcaatgaagcagtagagat  6297300                                                                                       <---------MYB111(2)                                                                                       <---------MYB46(2)                                                                                       <------------MYB.PH3(2)                                                                                       <---------MYB111(1)                                                                                       <---------MYB55(2)                                                                                       --------->MYB46(3)                                                                                     ------>NtERF2                                                                                  ------>NtERF2                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                                <---------MYB55(2)                                                                                --------->MYB46(3)                                                                              ------>MYB83                                                                              --------->MYB52(1)                                                                              ------>MYB46(1)                                                                              -------->P------->GAMYB                                                                             --------->MYB55(1)                                                                            --------->AtMYB61<-------                                                  ======================HOX2a_HOX2a --------->DEAR3(1)                                                  <------ZmHOX2a(1)         <---------MYB59 <--------   --------->ANAC58                        --------->AHL20(2)               <---------MYB46(2)  -----   --------->ANAC58                   --------->AHL20(2)<---------MYB52(1)  <---------MYB111(1) <---- -->ZmHOX2a(2)                     ------->TEIL --------->MYB59      <-----------HVH21 <---------MYB52(2) --ZmHOX2a(2)                  ------->TEIL<---------AHL20(2)    ------>ZmHOX2a(2)--------->LBD16   cgcataggcaaacccctagtccatgtataaatgtatgcattttaaaaaattaggaatcgttttgtgatctgtgtcaaacctacccgccaactacctttag  6297400  Previous    Next  AGI:  At3g18350.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68070.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84081.1); contains InterPro domain Protein of unknown function DUF639 (InterPro:IPR006927) Range:  from: 6296856    to: 6300679    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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