Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->TOE1(3)                                                                           --------->TOE2(3)                                                                         --------->GLK1(2)                                                                         --------->ARR11(3)                                                                 --------->ANAC58                                                               ---------->DOF2---------->DOF2                                                     --------->ANAC46    <---------ARR11(3)   ---------->DOF2                                 --------->ZAT6--------->ANAC58  <---------------AGL15                            --------->ANAC46     --------->RVE1(1)  --------------->AGL15              <---------TOE2(3) --------->ZAT14  --------->CCA1(1)         <-- --->HVH21   <------NtERF2----------->GT1    <<<<<<<<<TBF1   <---------HSFB2a(2)                  <--   attactaaagaaggcagagaattcaagtgagaaaaaactagggtttcttcttcacactacattccaaaagcaaaaaatcttaaaggggaattgaaatcga  6240500                     --------->GLK1(2)                    <---------GLK1(2)                                        <---------AHL20(2)                    --------->ARR14(2)                                     <---------CCA1(1)            <---------AGP1                                    --------->KAN4(2)        <---------AHL20(2)            <---------ARR14(2)                               --------->HSFB2a(1)     <----------DOF2      --------->ARR11(3)                                     <---------KAN4(1)   <-----------GT1     <---------At4g35610<---------YAB1            <---------TOE2(3)        <---------RVE1(1)   <-----------GT1  <---------ARR14(2)            <---------TOE1(3)       <---------ARR11(3)--------- --------DOF2 ------>ZmHOX2a(2)         <-------GAMYB    <---------YAB1   --------->ARR11(3)<-------- -------DAG2--------->ARR14(2)    <---------GLK1(1)  <---------GLK1(1)    <---------GLK1(2)<---------AHL20(2)   ctttttaagctctcgatctggagattctgatttttgagttcccgttgaagttagggtttctgaatgttccctcgaagatttttttatcttttatttattt  6240600                                                                                     <---------AHL20(2)                                                                                     <---------ATHB51                                                                                     --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                           ------>NtERF2                                                                           --------->ATERF1(1)                                                                           <------NtERF2                      <-----------HVH21                                   ------>NtERF2                  --------->MYB52(1)                                      <---------ATERF1(1)           --------->ANAC58 --------->ANAC58                              <---------ORA47(2)           --------->ANAC46 --------->ANAC58                              --------->RAP2.6(2)       <---------ANAC55(2)  --------->ANAC46                              <---------RAP2.3(1)       --------->ANAC58 --------->YAB1                                    <---------DEAR4(2)       --------->ANAC58<---------ATHB12                                  <---------RAP2.3(2)        - <---------YAB1  --------->AtMYB61        ----------->GT1                <---------DEAR3(1)       <-- >AHL20(2) *TSS --------->MYB46(3)  --------->YAB1    <-----------GT1    <---------RAP2.3(3)     <--- -AHL20(2) --------->ANAC58--------->SPL7 <---------ZAT6                 <---------RAP2.6(2)    -----   gttaatattacgcacgaaaccaccagtcatacgccttataagaagagttaaatgattttctagcccatctattaggcggcccattaaataattcgaaccg  6240700                                                                                                -----                                                                                        <-------MYC2                                                                                        ------->MYC3                                                                                       ==============                                                                                       <---------ANAC55(2)                                                                                       --------->TGA1a                                                                            <------------CBF   <-----                                                                           --------->ATHB12    ------                                                                         <-------GAMYB --------->O2                                                                         ========================bZIP_DOF                                                                         ========================MYC_MYB                                                                         <----------DOF2<-----------HVH21                                                                        <---------ANAC58<-------MYC3                                                                        <---------ANAC58------->MYC2    <------MYB83                                                       <---------ZAT18 --------->ANAC46    <------MYB46(1)             <---------LBD16                   <---------MYB52(1)   <---------O2    ----------->GT1       <---------KAN4(2)          <----------DOF2   --------->ZAT18 --------->ANAC55(2) -------->MYB52(2)   <---------LBD16                 ============================================bZIP_DOF -------MYB52(1)    --------->MYB52(1)       --------->ATHB12    <-------GAMYB <---------MYB46(3) ------MYB52(1)     <---------At5g28300     --------->ICU4       ================================MYC_MYB ------>GT1        <-----------GT1          <---------ATHB12    <---------MYB46(3)     <---------TGA1a   gttatttggtttaaactgaaattaccggtataatcgtggaattgaaatcattcgactttgagttgtctgttagtgcgttattggttaacacgtgagagat  6240800                                 <-------MYC3                                 ------->MYC3                                 ------->MYC4                                 <-------MYC4                                 <-------MYC2                                 ------->MYC2                                ====================================bZIP_DOF                                ====================================bZIP_DOF                                =====================bZIP_DOF                                =====================bZIP_DOF                                --------->O2                                <---------ANAC55(2)                                <---------O2                                --------->TGA1a                                <---------TGA1a                                         ------>NtERF2           <---------LBD16 --------->ZAT14                                     <---------ANAC58          ----------->RAV1(2)   --------->ANAC55(2)                       <---------ANAC58    -------          ------>ZmHOX2a(1)--------->ZAT18                           <----------DOF2 --------->At4g35610 ---->GLK1(1)              <---------ZAT18                           <---------DAG2  <---------At4g35610 ============================MYC_MYB           <----------DOF2  <------MYB46(1)<---------ANAC58 ----ARR11(3)   ------------>MYB.PH3(2)   ---------->DOF2---------->DOF2  <---------ANAC58    <------ --->ARR11(3)   ==========================MYC_MYB       *TSS    <------MYB83<---------CCA1(2) -------   atcgatagtctcctctggagtttgttaagttcacacgtgtgaatgaaagctttcgctctcaaagcttggtgctttttcgtctcttgcctctgccaaaatc  6240900               <----------DOF2              --------->HSFB2a(1)     --------->ANAC58        --------------------->WRI1   --------->SPL7       --------->DEAR3(1)           --------->SPL1(1)      <------NtERF2                <---------SPL7     <------NtERF2----------------->AGL1     ------>NtERF2<-----------------AGL1                   ------>NtERF2     <---------RAP2.6(3)           --------->TOE1(2)       <------NtERF2     <---------ATERF1(1) --------->ANAC55(1)              ------>NtERF2    --------->DEAR3(1)   --------->ANAC55(2)              --------->LBD16    --------->ANAC46     --------->ANAC58                 <---------RAP2.3(1)    --------->ATERF1(2)  --------->ANAC58                <---------DEAR3(1)    <---------ATERF1(2)  <---------ANAC55(2)            <---------At4g35610    --------->ANAC58     --------->ANAC46               <---------LBD16    --------->ANAC58 <-----------HVH21--------->ANAC58  --------->At4g35610    --------->RAP2.6(2) <---------LBD16           <-----------ARR10                   --------->ATHB12   <---------RAP2.6(2)<------ZmHOX2a(2)      ---------->DOF2                         <---------HSFB2a(1) -->ARR11(3)  ------>ZmHOX2a(2)   ------->GAMYB   --------->ARR11(3)                --------->GLK1(2) ---ARR11(3)<---------ARR11(3)   --------------->AtSPL3<-----------RAV1(1)        <------ZmHOX2a(1) < -->GLK1(2) --------->ARR11(3)--------->MYB46(3)  <---------ARR11(3)     --------->ALFIN1           <   ttttggccgccatcgatctttccgatcacggaacaaccgtacgaattgaaagtatctctgcggcgaagtagaaatgtggacggaggaatctttggattta  6241000             <---------ARR14(2)             --------->ARR14(2)             <-----------HVH21          <---------O2                                                      --------->ZAT18          ===========================MYC_MYB                              <---------At4g35610          =========================MYC_MYB                                --------->ZAT2          --------->O2                                                    <---------ZAT2          --------->TGA1a          <-----------------AGL1          --------->ABI4(1)          <---------TGA1a          <-----------------AGL2          ------>NtERF2         <------NtERF2             ----------------->AG           --------->DEAR3(1)         <XXXXXXXXXXXXXXXXXXXXMIR842                              <---------ALFIN1        <---------RAP2.6(3)    <---------ANAC58                   --------->ANAC46        ------>NtERF2          <---------ANAC58                  --------->MYB46(3)       ----------->HVH21    <--------P               --------->ANAC46     --------->At4g35610       --------->DEAR3(1)  <-------GAMYB             --------->ANAC58  <---------ALFIN1      --------->DEAR3(2)  <---------MYB46(3)         --------->ANAC58--------->RAP2.3(3) ---------ANAC58         <---------YAB1      <---------ANAC58   <---------At5g28300 ---------ANAC58         <---------AtMYB61   <---------ANAC58  <-----------GT1                   <---   gtgcttgtgccgacgggtctggtcgtgatggttgcttaccatgtctggctcgtctacgctattcttcaccgccccaagctcactgttatcgctctcaacg  6241100                                                                                     --------->HSFB2a(2)                                                                                     <---------HSFB2a(2)                                                                                  --------->GLK1(2)                                                                       <----------DOF2                                                                     ------>ZmHOX2a(1)                                                                    --------------->AGL15                                                                    <---------------AGL15                                                                   <-----------------AGL3                                     ------->TEIL                  ----------------->AGL1         ------>NtERF2        <---------YAB1                       <-----------------AGL1     <------        --------->ANAC46    --------->YAB1                 <---------YAB1    ----------->HVH21<------ -------CDC5               <---------YAB1    <-----------GT1       ==================================   ctgagtctcgacgacaatgggtcttctctatgatgactgtatgtttttttctcttctcatttctattgttcctcttttggtgacattctgggattttctt  6241200                 --------->GLK1(2)                <---------ARR11(3)                --------->ARR11(3)            --------->LBD16           --------->HSFB2a(2)       <---------GLK1(2)                                                       <---------ANAC58     <---------YAB1                                           <---------ANAC58 <---------ANAC46     <---------------AGL15                                    <---------ANAC58 <---------ANAC58    <-----------------AGL2                              <----------DOF2       --------->MYB59      -- ---ANAC58 <---------HSFB2a(2)                  ---------->DOF2    <----------DOF2            ------- ---ANAC58<---------LBD16         <---------TOE1(3)<---------At4g35610   <------ZmHOX2a(1)  <-------- ====================MADS_MADS    <---------TOE2(3)--------->At4g35610 <---------TOE2(3)  <----------   ggtatttctgattctggagattttggggtctagattagggtttatggcaatagagctgctttgttcgtgattttaggaattgggtattgagagtcttacg  6241300                                                                          ------>ZmHOX2a(2)         ------>ZmHOX2a(1)                                              --------->ARR11(3)     <---------ARR14(2)                                                 --------->ARR14(2)     --------->ARR14(2)                                                 <---------ARR14(2)    ------>ZmHOX2a(1)<---------GLK1(2)                                  <---------ARR11(3)          < ------->GLK1(1)   <---------YAB1                                      <---------CCA1(2) ----------->GT1 -->RAP2.6(3)      --------->ICU4         --------->At4g35610    <---------AHL20(2)     <--------P  - -SPL7  --------->TOE2(3)               <---------WRKY12   --------->TOE2(3)        <-----------RAV1(2) -----AtSPL3     --------->YAB1  <---------HSFB2a(2)       --------->TOE1(3)     --------->YAB1     <   gctctcctatcctcaattttcatgattctgaagttttcgaagtcaactaaaaactagtaaaccataaatatttggatcttcaaacatcaggtagcaaaat  6241400  Previous    Next  AGI:  At3g18210.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G22950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42214.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 6237936    to: 6240611    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18215.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68116.1); contains InterPro domain Protein of unknown function DUF599 (InterPro:IPR006747) Range:  from: 6240856    to: 6242579    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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