Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                            <------ZmHOX2a(1)                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                       <---------ANAC46                                                                                       <---------DEAR3(1)       --------->ARR14(2)                                                             <---------LBD16       <---------ARR14(2)                                                           --------->ANAC46     <---------MYB46(3)                    <-----------HVH21                       <---------LBD16 <---------DEAR3(1)            <---------GLK1(1)                                  --------->MYB52(1) ------>ZmHOX2a(2)             --------->GLK1(1)                                 <------ZmHOX2a(2) <---------MYB46(3)     --------->ICU4     --------->LBD16                       ==================HOX2a_HOX2a ------ZmHOX2a(2)     ---------->DOF2  --------->GLK1(2)                        --------->ARR11(3)--- ------->ARR14(2)<---------ANAC58      --------->ARR14(2)     <---------TOE2(3) <---------ARR11(3)<-- --------ARR14(2)<---------ANAC46      <---------ARR14(2)------->TEIL  <---------------AtSPL8   ----- --------MYB52(1)<---------ANAC58 <---------ANAC46       --------->GLK1(2)      <-----------HVH21 ---   cgatcggtggattcgagtggcttgcaaagatggatttcgagtatccgtcgaagggcatgaatctgaggtatttggagtacaagatcacggcggaggagag  6231700          <---------------AtSPL3                    <-------GAMYB         <------------------SPL14           --------->ATHB12     <---------REM1(1)                     <-------TEIL ---->At4g35610                           <------ZmHOX2a(2) ---->ZAT18             <------ZmHOX2a(2)--------->ARR11(3) -----At4g35610    --------->ANAC58      <---------ARR11(3)                                  <------MYB83 -----ZAT14        --------->ANAC58      --------->AGP1             <---------MYB46(3)       <------MYB46(1) -----ZAT18     <---------SPL7          --------->GLK1(1)          --------->ALFIN1 <---------DEAR3(2) ------>ZAT14 --------->ZAT14           <---------GLK1(1)        --------->ALFIN1   <------MYB83----- -------ZAT14 --------->SPL7       <---------MYB52(1)         <---------LBD16       <------MYB46(1)<- ---->ZAT14 <---------SPL7        <-------GAMYB     --------->At4g35610    <----------DOF2  --------- ------>ZAT18 --------->SPL1(2)  --------->MYB52(2)<---------MYB46(3)<------NtERF2  ----------->GT1--   cacactggtgaagcagtacggacgcgatcacgagttcgttagagatccattggccgttgcaaaacgcgggtggggaactttcaagtcggtttatttggta  6231800         <---------DOF5.7(2)       <---------MYB52(1)                                                                       <----      --------->TOE1(3)                      ---------->DOF2                        ----------->GT1      --------->TOE2(3)                   <-----------HVH21                         <---------ANAC55(2) ---->SPL7 <---------ANAC46            <---------ANAC58                             --------->ANAC55(2) --------At4g35610              <---------ZAT2   --------->ARR11(3)         ----------->GT1    ------ >MYB59--------->DOF5.7(2)      --------->ZAT2   <---------ARR11(3)   --------->WOX13(1)       ------ ------->At4g35610   <-----------GT1   <---------ANAC58 <---------At4g35610 <---------ZAT6<----------DOF2   cagcagaacgttagcgttgatataaaccggttcaagctggttcttgtcaaagctcttgagctattgcataatcagtcagtgtaaataagtaactttcaag  6231900                                     --------->ARR11(3)                                --------->MYB52(1)        <---------ZAT6         <-----------GT1    --------->ZAT18         --------->YAB1                                               --------->MYB46(3)    --------->ZAT14         <---------ICU4                                          --------->ANAC46    <---------ZAT14        <---------ATHB51 <------MYB46(1)                    <-----------HVH21 <---------ANAC58          --------->AHL20(2)                                 ------->GAMYB <---------ANAC58          --------->ICU4   <------MYB83                      --------->DEAR3(1) <---------ANAC46          <---------AHL20(2)                                --------->MYB46(3)------ -----ATHB12          --------->ANAC58 --------->ATHB12 --------->ARR11(3)   <------------AtMYB77 --->ANAC58           --------->ANAC58<------ZmHOX2a(2) <---------GLK1(2)   <---------At5g28300------ --->ANAC58           ----------->GT1<---------ARR11(3) <---------ARR11(3) <-----------GT1     ------   cattcgtgtactgtaatcttgggaacgaaataattaccagatcatttggtctagtttagatttttctcaaatttgtttaaccgtccccttaacaaacact  6232000                                                                                              <------                                                                                        <---------STY1(1)                            <----------DOF2                                       --------->ARR14(2)                           <---------DAG2                                         <---------ARR14(2)                           <----------DOF2                                     <---------ANAC58 --->ANAC58        <------------ATHB5                                          <---------ANAC58 --->ANAC58       <---------ATHB12                                             <---------ANAC46   <-- --->ANAC46   --------->MYB46(3)                                        ------------>CBF--------->STY1(1)   caagtctgaagtctgaaccaataactgggccttttgggctaactcataaaaactcaaaacaggcccatttatcaaacaatagcgtataccctagggcttt  6232100                                *TSS     <-----------GT1                               --------->ZAT14                                                    <--                               <---------ZAT14         <---------TOE1(3)                          ---                               <---------ZAT18         <---------TOE2(3)            <------ZmHOX2a(2)                            --------->LBD16<---------ALFIN1                        <---------ARR11(3)                           <---------HSFC1(1)    <---------------AGL15          <---------HSFB2a(2) -                           --------->HSFC1(1)    --------------->AGL15          --------->HSFB2a(2)<-   <---------GLK1(2)       <---------HSFB2a(2)  ----------------->AGL3       <---------MYB52(1)   <-- ----DOF2                  --------->HSFB2a(2)  <-----------------AGL2      <---------SPL7        --- ---------GT1     <----------DOF2      <-----------HVH21                <-----------GT1    <---------ANAC46   tttcaaattctctattctctctttcatttccagaacactcttgtcacacttccatttagggttttctgcaaatttctccgttcgagatcaattccgtcga  6232200                                             ------>NtERF2                                          <---------RAP2.3(1)                                        <---------At4g35610                                        --------->At4g35610                                     <-------GAMYB                                     --------->ATERF1(1)                                     <------NtERF2                                    <---------MYB46(3)                                    <---------DEAR3(2)                                   <---------DEAR3(1)                                  <---------ABI4(1)                                  <------NtERF2                                 <---------ATERF1(1)                                 ------>NtERF2<------NtERF2                                 <---------RAP2.3(1)                                 <---------ORA47(2)                                 <---------ERF1                                 <---------DEAR4(2)                                 <---------RAP2.6(1)                                 <---------RRTF1(1)                      ---------->DOF2                                <---------RRTF1(2)                     ------>ZmHOX2a(2)                                <---------RRTF1(3)                   <---------ARR14(2)                                <---------RAP2.3(2)                  --------->ARR14(2)                                <---------DREB2C(2)                 <---------CCA1(2)      <---------ARR11(3)        <---------RAP2.6(2)              <-------PIF5    --------->ANAC58            --------->ATERF1(2)              --------->LBD16    --------->ANAC58            <---------DEAR3(1)               ------->PIF5 -------ARR11(3)                <---------ANAC46                <---------O2<---------At4g35610 ------>ARR11(3)                <---------ATERF1(2)  <---------ANAC46--------->ARR11(3) ----->ZmHOX2a(2)               <---------RAP2.3(3)  <---------ANAC58<---------AGP1 -----ZmHOX2a(2)         --------->AHL20(2)  ----------->RAV1(1)<---------ANAC46                  --- -------ARR14(3)         <---------AHL20(2)<------NtERF2        --------->O2--------->At4g35610 ----- ------>ARR14(3)   ----------->GT1--------->ATERF1(1)<---------ANAC58<---------ARR11(3)         -----   gatctcaagctctctcactcgtagtaaaaaaatggcggcggtagcggcaccaatggcttcgaagccccgtggatctaaagctgaatcgttcgtagacaac  6232300                     --------->HSFB2a(2)                        <-----------------AGL2                     <---------HSFB2a(2)                     <---------SPL7                 <---------ARR14(2)                        --------->SPL7            --------->ARR14(2)                             --------------->AtSPL3            <---------ARR14(2)                           ------------------>SPL14           --------->CCA1(2)                             --------->ORA47(1)           --------->RVE1(1)                             ------>NtERF2           --------->GLK1(1)                             <---------SPL7          --------->ARR11(3)                            --------->DEAR3(1)          --------->ARR14(2)                           --------->ATERF1(1)          <---------ARR11(3)                           <------NtERF2          <---------ARR14(2)                          ------>NtERF2        ----------->ARR10                             <---------RAP2.3(1)                        ---- ------>MYB52(1) --------->ARR14(2) <---------ZAT2   --------->bZIP60(1)                         <--- ----->DOF2<---------GLK1(1)        --------->At4g35610--------->RAP2.3(1)                     ------ ---->MYB46(3)   <---------GLK1(2)  --------->ZAT2----------->HVH21           ---------->DOF2 <------   aagcggagagaagatatccgattcgcgaacatcaactctgctcgagcagtctctgacgccgtccgtactagtttgggaccgaaaggaatggacaagatga  6232400                                                                              <---------ANAC46                                                                           <---------DEAR3(1)                                                                          --------->At4g35610                                                                          <---------At4g35610                              <---------TOE2(3)                           <---------ZAT2                      <--------HAHB4                                      --------->ZAT2         --------->SPL7 <---------YAB1                                    <------NtERF2       <---------SPL7 <---------ICU4                                      --------->ATERF1(1)   <---------DEAR3(1) --------->ATHB12                                   --------->MYB52(1)   --------->ANAC46   --------->YAB1            ------>ZmHOX2a(1)        <---------ATERF1(1)  <---------LBD16    <---------ATHB12          --------->TOE1(3)       --------->ATERF1(1)      <---- ----->GLK1(1)       --------->ICU4          <------ZmHOX2a(2) <---------ARR14(2)       --------->MYB52(2) ------GLK1(1)       <---------YAB1   --------->At4g35610      --------->ARR14(2)  <---------ARR11(3) --->ATHB12     ----------->GT1       <---------At4g35610   <---------TOE2(3)<------NtERF2     ------ ---YAB1--------->MYB52(1)   --------->MYB52(1)--------->TOE2(3)      ------>NtERF2--------->ARR11(3)   tttccacggcgaacggagaggtaatcattactaacgatggagctacgatccttaacaagatggaggttttgcagccagcggcgaagatgttagtcgagct  6232500                           --------------->AtSPL3                           --------------->AtSPL8                           <---------------AtSPL3                       <------NtERF2                      --------->LBD16                     --------->DEAR3(1)                    --------->RAP2.3(1)                    <------NtERF2                    <---------LBD16                    --------->ATERF1(1)                   ------>NtERF2                  --------->RAP2.3(2)                  --------->RAP2.3(3)                  --------->ATERF1(2)                  <---------ATERF1(2)                   <---------MYB52(1)                  ------->GAMYB                         <-------PIF5                  --------->DEAR3(1)                    ------->PIF5                 --------->MYB46(3)                     --------->ATERF1(1)                         <                 --------->ATERF1(1)      <---------ANAC58--------->ZAT18                          --                 --------->ERF1--------->SPL7          <---------DEAR3(2)                          --                 --------->RAP2.3(1)      <---------ANAC58<---------ZAT14                         <--                 --------->DEAR3(2)       <---------ANAC46--------->ZAT14                        <---                <---------At4g35610    ------->GAMYB  <---------DEAR3(1)                         <---  <---------CCA1(2)<---------ATERF1(1) <-----------RAV1(1)<---------ZAT18                        ---- ------DOF2  <-------TEIL  <---------------AtSPL8    <---------LBD16     <---------ZAT6    --------->MYB52(1) --->HSFB2a(1)  --------->At4g35610   <------------AtMYB77--------->ABI4(2)  --------->WOX13(1)  ----   ttccaaatctcaagattcagccgccggagatggtaccacaactgtcgtagtaatcgccggtgcgcttctcaaggagtgtcaatcgcttctcacaaacggg  6232600  Previous    Next  AGI:  At3g18180.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68130.1); contains InterPro domain Protein of unknown function DUF563 (InterPro:IPR007657) Range:  from: 6230276    to: 6231884    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18190.1    Description:  chaperonin, putative. similar to T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G24510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68126.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65390.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70636.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain Chaperonin TCP-1, conserved site; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain T-complex protein 1, delta subunit; Range:  from: 6232132    to: 6234066    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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