Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                   <---------ARR11(3)                                         -------                                   --------->GLK1(2)                                          -------                                   --------->ARR11(3)                                         -------                          --------->ARR11(3)                                          <---------ANAC46 -------->DOF2            <---------ARR11(3)                                          <---------ANAC58 ---ANAC58               <---------GLK1(1)                                            <---------ANAC58 ---ANAC46               --------->GLK1(1)  <---------ZAT18                   <---------YAB1<-------- ---AtLEC2            --------->ANAC58      <---------ZAT14                --------->ICU4  <---------REM1(2) ---ANAC58            --------->ANAC58      --------->ZAT14   <------ZmHOX2a(1) <---------AHL20(2) <-   gaaaagagacatataagtgaagacaagaaatcttgaaaatctctagttcagtccaaaggtttgaggagagtttgaacattatgaaattgcttctacacgt  6220200 <---------MYB59 ---->ALFIN1 ->PIF5 ->MYC4 ->MYC3 --MYC3 --MYC2                                  <-------GAMYB ->MYC2                                 <-----------RAV1(1) --MYC4                                 --------->MYB111(2) --PIF5                                 --------->MYB55(2)                                   <------- ---O2                      --------->ARR14(2)                                              <-------- ---TGA1a           <-----------HVH21   <---------MYB46(3)                              --------->AHL20(1) -->ANAC46       --------->GLK1(1)      --------->MYB52(2)                              --------->AHL20(2) -->TGA1a       <---------ARR14(2)  --------->MYB52(2)                                  <---------AHL20(2) -->O2          --------->ARR14(2)<---------MYB52(1)  --------->AHL20(2)                <---------AHL20(1) -ALFIN1    <---------LBD16 <---------ARR14(2)    <-------TEIL               --------->TOE2(3)  <---- --------PCF2 --------->LBD16    <---------MYB52(1)--------->YAB1           <---------ZAT6  ---------   gggcctacttataaaccggaaatgtcaatggaaccggtttgtttgttggacattcattatatacaaaattgactggtaatgttagtccattttattaaat  6220300                --------->TOE2(3)                <---------------AGL15     <-------TEIL                <---------MYB59      <---------AHL20(2)          <---------------AtSPL8   <---------AHL20(2)     --------->AHL20(2)            --------->AHL20(2)                                 <---------ARR11(3)     <---------AHL20(2)        <---------AHL20(2)                                     <-----------ARR10    --------->AHL20(2)         --------->AHL20(2)                               --------->CCA1(2)   < --AHL20(2)   ------->TEIL   --------->AHL20(2)--------->AHL20(2)      <---------At4g35610 --------->ANAC46 -AHL20(2)--------------->AtSPL8 --------->AHL20(2)               <---------ANAC58    --------->GLK1(2) -------RAV1(1) --------------->AGL15--------->AHL20(2)           <---------ANAC58    --------->ARR11(3) >AHL20(2)<---------------AtSPL3 <---------AHL20(2)      ---------->DOF2  --------->MYB52(1) --------   gttggatttaattttgtacctaaataagcatatatatatatatatacatatatataactgaaagtatttcttgagctaatggatacaaaatctacacaat  6220400                                                            <---------ZAT14                                                --------->YAB1                                              ------>MYB46(1)                                              ------>MYB83  --------->ZAT14    <------MYB83                             --------->MYB52(1)    <------MYB46(1)                         --------->TOE1(2)                                    <---   --------->MYB59                  <-----------GT1--------->AHL20(2)                         ------- <---------MYB52(1)           <---------AHL20(2)--------->TOE2(3)                             <------ ---------SPL7         --------->ZAT6       --------->TOE2(2)         <-----------GT1  --------->At4g35610 ->ANAC46            ----------->RAV1(1)   --------->MYB46(3) --------->At4g35610  <-----------GT1   acggttcggtttgattcaatagccaacactatttgatttttctaaaccaacgataaaatcggtctactgaaattactaccgagtttatcagttcaacatc  6220500                                      --------->DAG2                                  ------>MYB46(1)                                  ------>MYB83                                =====================================================================                                <---------MYB59                             <---------WRKY18(1)                            --------->WRKY12                            --------->WRKY38(1)                           <---------WOX13(1)                          <-------GAMYB                          <---------ANAC58                          <---------ANAC58                           <-------GAMYB                         <---------MYB46(3)                         <------MYB46(1)                         <------MYB83---------->DOF2                <------MYB83                         --------->MYB52(2)                         ----------->GT1       --------->GLK1(2)                  ------->TEIL  <---------------AGL15       <---------MYB52(1)           <---------ARR14(2)     <---------DEAR3(2)  --------->MYB55(2)                <-------GAMYB                 --------->ARR14(2)    --------->ETT(1)     <------MYB46(1)                  <------MYB46(1)                <---------GLK1(2)  <-----------HVH21  <-----------RAV1(1)                  <------MYB83                 ----------->ARR10 -------DOF2<---------ARR14(2)  --------------->AGL15    --------->MYB59           --------->DAG2 -->ARR11(3)--------->ARR14(2) ----------------->AGL1<---------MYB46(3)     ---------->DOF2 ---ARR11(3)------->TEIL<---------AtMYB61         <----------DOF2  --------->MYB59---------->DOF2 <--   tttcggtcggaacgtatatgtatatgttggttgacctaataaagcaaatagactttggttcggttaagttcggttaaataaagaaaaagcagattctgag  6220600                                               <---------ZAT14                                        <-----------HVH21                                *TSS   =================RAV                                <-----------ARR10                                --------->GLK1(2)                        --------->MYB46(3)                    <---------------AGL15   ----------->RAV1(2)         --------->ANAC58                    --------------->AGL15   <------NtERF2               --------->ANAC58          ---                   ----------------->AGL3   <---------ANAC46            --------->ANAC46          ---                   ------------>CBF    <-----------RAV1(1)            <-----------GT1           -----            <-------TEIL        <---------ARR14(2)                <---------ICU4           --------->At4g35610           --------->GLK1(2)   <---------GLK1(2)   <---------ZAT6--------->ICU4            <---------At4g35610 ===================================MADS_MADS ----------->HVH21  <---------YAB1        ------>ZmHOX2a(2) --------DOF2      ----------------->AGL1  ------>NtERF2      <---------YAB1          <------ZmHOX2a(2)   ctttgtttgtgagattcagtttccaatatcagagaatctctgtgtcgcctgaagtgataacattctcattattcacccaaggagagagatcggagctaaa  6220700             <------NtERF2            --------->LBD16                                                --------->YAB1 ------>ZmHOX2a(1)          <---------LBD16                   ----------->RAV1(1)     --------->GLK1(2)<----------DOF2   <---------CCA1(2)                  --------->TOE2(3)           <------ZmHOX2a(1) <---------DAG2 ------>ANAC58                        --------->TOE1(3)    ----------->RAV1(1)   <---------ZAT18 ------>ANAC58                     <-----------GT1        --------->ANAC46 --------->TOE1(3) ----->DOF2--------->LBD16     <---------YAB1             <----------ID1   --------->TOE2(3)   aagccatctctcgccggaaaatttctcagttttcttattaccttagccacagacaacaagacgacagaggaatctaatcttagccccctttcctctctgt  6220800                                             --------->HSFC1(2)                                             <---------HSFC1(2)                                            ------->TEIL                                         --------->ANAC46                                         --------->ANAC58                               --------->ARR11(3)                              <---------GLK1(1)                              --------->RVE1(1)                              --------->GLK1(1)                              <---------RVE1(1)                                           <---------MYB46(3)                              --------->CCA1(1)                     XXXXXXXXXXXXXXXXXXXX>MIR2938                              <---------CCA1(1)      <---------ANAC58       --------->AHL20(2)   <---                <----------DOF2<---------ARR11(3)    <---------ANAC58 <----------DOF2    <---------ATHB12       --------->ARR11(3)    --------->ARR11(3)<----------DOF2   <-----------GT1     --------->MYB46(3)       <---------ARR11(3)    <---------ARR11(3)<---------DAG2   <-----------GT1    --------->ANAC46--      <---------CCA1(2)<----------DOF2   --------->ANAC58<----------DOF2    <---------AHL20(2)   ----   ctctctctatatctctgtctttaggctttgagatatcttcaacacgaagctttttgcttcttttttttatctctttaaaaaattccagccaatggttcga  6220900                                 <---------At4g35610                                 --------->At4g35610                                 --------->TGA1a                                 --------->O2                                 <---------TGA1a                    <----------DOF2             -----             ==============================bZIP_DOF         --------->ANAC55(2)                 <----             ---------->DOF2     ==============================================bZIP_DOF        ------        --------->At4g35610      <---------O2        ------>ZmHOX2a(2)                         <-----    --------->YAB1             <-----------RAV1(2)  --------->GLK1(1)                         <------ ------ARR14(2)  <-----------HVH21                  <---------GLK1(1)                         <------ --------------->AGL3     xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1)                    <------ ----->ARR14(2)  --------->ARR11(3)--------->ALFIN1--------->ARR11(3)                         <------   atccaatagtagcttcaaaggtcatggatttagtcaggtgtgttctaaattctgatctccttatgtattcctttctctcgctattggtttctagttccgt  6221000        --------->CCA1(2)        --------->ARR14(1)       --------->ARR11(1)       <---------ARR14(2)       --------->ARR14(2) ---->STY1(1) -----MYB52(1)                  <------MYB46(1) --->LBD16                      <------MYB83                   ---------->DOF2 ----SPL7<-------TEIL          <---------TOE2(3)        <---------WOX13(1) ---ANAC55(2)                  --------->MYB59        --------->ATHB12 ---ANAC58              <------ZmHOX2a(1)       --------->bZIP60(2)                              <--- ---ANAC58        --------->At4g35610           --------->ANAC46                               <----- ---ANAC46        <---------At4g35610 <----------DOF2<---------YAB1 <-------TEIL         <---------AtMYB61   agggttttagatacgtttgcaactgaggacaattaggtttcttttaatccacatcacgattgattcaaagttcattgtgtttctgtaggggtttgtggag  6221100  Previous    Next  AGI:  At3g18160.1    Description:  PEX3-1 (PEROXIN 3-1). similar to PEX3/PEX3-2 (PEROXIN 3-2) [Arabidopsis thaliana] (TAIR:AT1G48635.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68158.1); contains InterPro domain Peroxin-3; (InterPro:IPR006966) Range:  from: 6220632    to: 6223079    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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